Spo19560.1 (mRNA) | SpinachBase

Overview


Name	Spo19560.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S2, chloroplastic
Location	Super_scaffold_229 : 407398 .. 408069 (+)
Sequence length	627

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGGGAGTTCATTTTGGTCACGGTACTCGGAAATGGAATCCTCGAATGTCGCCTTATATCTCTGCAAAATGTAAAGGTATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGTTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGTATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGTGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

mRNA sequence

ATGGAAGCGGGAGTTCATTTTGGTCACGGTACTCGGAAATGGAATCCTCGAATGTCGCCTTATATCTCTGCAAAATGTAAAGAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGTTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGTATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGTGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

Coding sequence (CDS)

ATGGAAGCGGGAGTTCATTTTGGTCACGGTACTCGGAAATGGAATCCTCGAATGTCGCCTTATATCTCTGCAAAATGTAAAGAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGTTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGTATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGTGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

Protein sequence

MEAGVHFGHGTRKWNPRMSPYISAKCKEACDLVFDASSRGKQFLIVGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19560	Spo19560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19560.1	Spo19560.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19560.1.exon.1	Spo19560.1.exon.1	exon
Spo19560.1.exon.2	Spo19560.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19560.1.CDS.1	Spo19560.1.CDS.1	CDS
Spo19560.1.CDS.2	Spo19560.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo19560.1 vs. NCBI nr
Match: gi|11497513|ref|NP_054921.1| (ribosomal protein S2 [Spinacia oleracea])

HSP 1 Score: 415.6 bits (1067), Expect = 5.000e-113
Identity = 207/223 (92.83%), Postives = 207/223 (92.83%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Sbjct: 194 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. NCBI nr
Match: gi|188036203|pdb|3BBN|B (Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome)

HSP 1 Score: 412.5 bits (1059), Expect = 4.300e-112
Identity = 206/222 (92.79%), Postives = 206/222 (92.79%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 10  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLI 69

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL
Sbjct: 70  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 129

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 130 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRN 208
           NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRN
Sbjct: 190 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRN 231

[Close]

BLAST of Spo19560.1 vs. NCBI nr
Match: gi|628819097|gb|AHY80530.1| (ribosomal protein S2 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 410.2 bits (1053), Expect = 2.100e-111
Identity = 204/223 (91.48%), Postives = 206/223 (92.38%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. NCBI nr
Match: gi|1020267073|gb|AMZ03424.1| (ribosomal Protein S2 (chloroplast) [Bienertia sinuspersici])

HSP 1 Score: 408.7 bits (1049), Expect = 6.200e-111
Identity = 203/223 (91.03%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRL RL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLTRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. NCBI nr
Match: gi|836642792|ref|YP_009143796.1| (30S ribosomal protein S2 (chloroplast) [Salicornia bigelovii])

HSP 1 Score: 408.3 bits (1048), Expect = 8.100e-111
Identity = 203/223 (91.03%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLLEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEG SSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGHSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQR1_BETVU (Ribosomal protein S2 OS=Beta vulgaris subsp. vulgaris GN=rps2 PE=3 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 1.500e-111
Identity = 204/223 (91.48%), Postives = 206/223 (92.38%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
Match: A0A165XMG5_9CARY (Ribosomal Protein S2 OS=Bienertia sinuspersici GN=rps2 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 4.300e-111
Identity = 203/223 (91.03%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRL RL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLTRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QY55_SALBI (30S ribosomal protein S2, chloroplastic OS=Salicornia bigelovii GN=rps2 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 5.600e-111
Identity = 203/223 (91.03%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLLEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEG SSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGHSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QXA8_SALEU (30S ribosomal protein S2, chloroplastic OS=Salicornia europaea GN=rps2 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 5.600e-111
Identity = 203/223 (91.03%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEG SSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGHSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
Match: A0A0G2QX62_9CARY (30S ribosomal protein S2, chloroplastic OS=Salicornia brachiata GN=rps2 PE=3 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 5.600e-111
Identity = 203/223 (91.03%), Postives = 205/223 (91.93%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHILNLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ AGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLILTKLVFAICEG SSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILTKLVFAICEGHSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
Match: RR2_SPIOL (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea GN=rps2 PE=1 SV=1)

HSP 1 Score: 415.6 bits (1067), Expect = 3.200e-115
Identity = 207/223 (92.83%), Postives = 207/223 (92.83%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRMSPYISAKCK               EACDLVFDASSRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Sbjct: 194 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
Match: RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps2 PE=3 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 3.400e-109
Identity = 197/223 (88.34%), Postives = 202/223 (90.58%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRM+PYISAK K               EACDLVFDA+SRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTKTARFLSEACDLVFDAASRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR EQ AGRL RL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKAGRLNRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
Match: RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 1.100e-107
Identity = 194/223 (87.00%), Postives = 200/223 (89.69%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRM+PYISAK K               EACDLVFDA+SRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAI+ARCHYVNKKWLGGM TNWSTTETRLHKFRDLR EQ  GRL RL
Sbjct: 74  VGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETRLHKFRDLRTEQKTGRLNRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
Match: RR2_COFAR (30S ribosomal protein S2, chloroplastic OS=Coffea arabica GN=rps2 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 6.000e-106
Identity = 191/223 (85.65%), Postives = 197/223 (88.34%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNP+M PYISAK K               EACDLVFDA SRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPKMEPYISAKRKGIHITNLTRTARFLSEACDLVFDAGSRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVA AAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQ  GRL RL
Sbjct: 74  VGTKNKAADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQKTGRLNRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAA++KRQLS LQTYLGGIKYMTGLPDIVII+DQ EEYTALRECITLGIPTICLIDT
Sbjct: 134 PKRDAAMLKRQLSRLQTYLGGIKYMTGLPDIVIIIDQHEEYTALRECITLGIPTICLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP 209
           NC+PDLADISIPANDDAI+SIRLIL KLVFAICEGRSSYIRNP
Sbjct: 194 NCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSSYIRNP 236

[Close]

BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
Match: RR2_CARPA (30S ribosomal protein S2, chloroplastic OS=Carica papaya GN=rps2 PE=3 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 7.800e-106
Identity = 192/222 (86.49%), Postives = 198/222 (89.19%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           MEAGVHFGHGTRKWNPRM+PYISAK K               EACDLVFDA+SRGKQFLI
Sbjct: 14  MEAGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA DSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR EQ  GRL RL
Sbjct: 74  VGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRTEQKTGRLNRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVII+DQQEEYTALRECITLGIPTI LIDT
Sbjct: 134 PKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIIDQQEEYTALRECITLGIPTISLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRN 208
           NC+PDLADISIPANDDAIASIRLIL KLVFAICEG SSYI+N
Sbjct: 194 NCDPDLADISIPANDDAIASIRLILNKLVFAICEGHSSYIQN 235

[Close]

BLAST of Spo19560.1 vs. TAIR (Arabidopsis)
Match: ATCG00160.1 (ribosomal protein S2)

HSP 1 Score: 366.7 bits (940), Expect = 9.500e-102
Identity = 184/222 (82.88%), Postives = 191/222 (86.04%), Query Frame = 1


		  
Query: 1   MEAGVHFGHGTRKWNPRMSPYISAKCK---------------EACDLVFDASSRGKQFLI 60
           M AGVHFGHGTRKWNPRM+PYISAK K               EACDLVFDA+SRGKQFLI
Sbjct: 14  MRAGVHFGHGTRKWNPRMAPYISAKRKGIHIINLTRTARFLSEACDLVFDAASRGKQFLI 73

Query: 61  VGTKNKAVDSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARL 120
           VGTKNKA D V+RAAIRARCHYVNKKWLGGMLTNWSTTE RLHKFRDLR EQ      RL
Sbjct: 74  VGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKRLHKFRDLRTEQKTEGFNRL 133

Query: 121 PKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDT 180
           PKRDAAV+KRQLS L+TYLGGIKYMTGLPDIVII+DQQEEYTALRECITLGIPTI LIDT
Sbjct: 134 PKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEYTALRECITLGIPTISLIDT 193

Query: 181 NCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRN 208
           NCNPDLADISIPANDDAIASIR IL KLVFAICEGRSSYI+N
Sbjct: 194 NCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQN 235

The following BLAST results are available for this feature:

BLAST of Spo19560.1 vs. NCBI nr
BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
BLAST of Spo19560.1 vs. TAIR (Arabidopsis)

BLAST of Spo19560.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|11497513\|ref\|NP_054921.1\|	5.0e-113	92.8	ribosomal protein S2 [Spinacia...	[more]
gi\|188036203\|pdb\|3BBN\|B	4.3e-112	92.7	Chain B, Homology Model For Th...	[more]
gi\|628819097\|gb\|AHY80530.1\|	2.1e-111	91.4	ribosomal protein S2 (plastid)...	[more]
gi\|1020267073\|gb\|AMZ03424.1\|	6.2e-111	91.0	ribosomal Protein S2 (chloropl...	[more]
gi\|836642792\|ref\|YP_009143796.1\|	8.1e-111	91.0	30S ribosomal protein S2 (chlo...	[more]

BLAST of Spo19560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A023ZQR1_BETVU	1.5e-111	91.4	Ribosomal protein S2 OS=Beta v...	[more]
A0A165XMG5_9CARY	4.3e-111	91.0	Ribosomal Protein S2 OS=Biener...	[more]
A0A0G2QY55_SALBI	5.6e-111	91.0	30S ribosomal protein S2, chlo...	[more]
A0A0G2QXA8_SALEU	5.6e-111	91.0	30S ribosomal protein S2, chlo...	[more]
A0A0G2QX62_9CARY	5.6e-111	91.0	30S ribosomal protein S2, chlo...	[more]

BLAST of Spo19560.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RR2_SPIOL	3.2e-115	92.8	30S ribosomal protein S2, chlo...	[more]
RR2_EUCGG	3.4e-109	88.3	30S ribosomal protein S2, chlo...	[more]
RR2_VITVI	1.1e-107	87.0	30S ribosomal protein S2, chlo...	[more]
RR2_COFAR	6.0e-106	85.6	30S ribosomal protein S2, chlo...	[more]
RR2_CARPA	7.8e-106	86.4	30S ribosomal protein S2, chlo...	[more]

BLAST of Spo19560.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
ATCG00160.1	9.5e-102	82.8	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 63..80 score: 2.2E-24coord: 134..151 score: 2.2E-24coord: 172..186 score: 2.2E-24coord: 151..162 score: 2.2
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 1..200 score: 7.7
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 1..201 score: 29
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 1..206 score: 1.6E
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAMs	TIGR01011	TIGR01011	coord: 1..202 score: 2.7
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 134..158 scor
IPR023591	Ribosomal protein S2, flavodoxin-like domain	unknown	SSF52313	Ribosomal protein S2	coord: 1..204 score: 5.49
None	No IPR available	GENE3D	1.10.287.610		coord: 76..128 score: 9.5
None	No IPR available	GENE3D	3.40.50.10490		coord: 134..203 score: 2.2E-50coord: 25..75 score: 2.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003735	structural constituent of ribosome