Spo19765.1 (mRNA) | SpinachBase

Overview


Name	Spo19765.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Thylakoid lumenal 17.9 kDa protein
Location	chr5 : 16893059 .. 16896570 (-)
Sequence length	1106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGACACTTTGACAGTCATATTTTGCTGAATTCATTCGCCATTTACTTTACATTTTGACAGTGTTATGAATTTGGCGCTTAATAATAATGCATTAATGCCCAAAACAAAAGCGTAGGGAAAAGATTAGGACCAAGAAGATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGTAATTTTTAATTTATTCTCTCTATCCCATTTTTTTAATTTGATAAGTATTAAAGTAATTTTTGTTGCTAAAGTTTGATTTGTTATTGCAGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGGTAATTAAGAATTTTATTCAGTGTTCTTCTGATTTAATTTTTGTTCTTTTCCAGGAAACAAGTTTTATTAGGGTTTGCACCTTTTTTTTTTTTTTTTTTATTTGGATTGATTAAAAATTAGTTATATGTAGTTAGTTTATATTGTTGTTGTTTCCTTGGTCAATTCATGCTAGTTTATTTTGTGTTATCCATATGTTGAAAATGAGGTCAATTTGACAAGCCATTTTGGGGGTTTGAAATTAAAATTTGTTTTGTAGAAATGAAGTTGGAATGATATACTTCCTCCATTTTTTTTTTAATTGCACCATCTTTGATTTCACGCTTGCCAATGCACTATTTTAACCACTAATATCTCTCATTATACATTTTAAAAAATTATAAAAATTTGATGATTTGAAAGTATATATTTCGAGACGAATCTAACAAGATCCCACATGAATATATTTTTCTTTTAATATAAATCACAAAAAATAACTATATAAGAATATGTGAATAGTGCTAAAACCAAGATGGTGCAATTATTAAAAAATGGAGGAAGTAAGTTTTAACTCGATTAGAAGTTCGGAACTCTTAAAGTTAATTGAAAAGATGTTGTGGAATATAGACTTAGACCTGCCTAGTAGCAAGATATTGTGATTGAAAAAACCAGAAACAGCAGCTTTGAGGACAAAAAGGCTAGCAAGTTTTAGGGTGTGAATGTACAACGCCATTGAGGATTTGAGGTAGACGTATTGATAAAGAAGAATATGTGAATCTGCGAAATGTATTAAGGTTTGTTGAGCGGCTAGTAGGCTATGTAATGATATGTCTTGCAGTTATGGTTGATACTTGATAGGTAGAAAGATACAATAATGGTTTCATGGATTCATAGAGGGGCGTTGAGGTTAACTTCTATGTCAAGTGCATCTAGGAGCCCATGTCTAGTTGAGTGAAATTACAGATTATATAGCACTTTCACTGACTCTAAAATCATTCAAATGGTGAAATACTGAAATCTGAATCTTTATGTTAATCAACTCCTTAGTAATCAGAACATGAGGCTAATATGGTCAAACGAATTTAGCTAAGGGTGAATATGTTTGAAGAAAATGATAGCTTAGAGAAGTTCAGATAATAAGGGCGAACAGGTTTAGAAAAGAGTCATGAAGACAAGAAGTTCGTAGAAGTGGATTAGGGTCTTGAAGTTTTGGACTTTTGAACCCTTTTTATTCTAAGCCTAATAGATTTATTATTACTAACCATCAGAGATGAAGAAGCAAGCTTCTACATTCACACCTCTTCCTCCCTCCCAAAGCAACCAATTGCTGTCGCTAATGCTAGCAATAGTATGATTTGGCCAAAGTTCCATTCTGTGGCATATTGCACGAGTTACTATCATCTTAAACTTTTCAATTTTACATCTGAATTGGAAATATTGTAGAAGTGGCAAAAACTAAGATAGAAACAAAAAAATGTATCTTACATTGGCAGCCCAAAGCAGTTGACCAATCATGGGAAGCTGCAGTGCTGACGACTGCCAAGAGCAACATGTACTTAGGAGTTGGGGATGAATACATTGTGATAGTTATACTTGCTGAAGGATACCTTTAGTGAGGATGAGGGCCGATGAGGCAGAGGAGGCAGTTATGTTCCATTCTACTCGCCTTGTCATCTTATGTGTGTAATTATTGTGTGTTTCCTTTGTTATCCTTCCTATTCTTGTATGCAAAATTGTACTCCACTTTGTATTGTGCAACATAAATAACCTATTTTTCTCTGAAGCTTCTATGTCCACTGTTTTCCTCCTTTTGTTTGAAAATTAACCTATGTTTGCCCCCCCCCCCCCNCCCCCCTAATTTTTTTTTATTACGAACATTCTAAATAGTGTTCTGCTCATTTATTTTATTTTATTTTACTTTTTTGTTTGTTTGCTTCATTTGTCAAGAAGAAACCAATTTGTTTCCCGTCTTTTCTTTTTAATTCTCTACTTCCAGTATAAATACAGTAGAGAGCTCATGATTTTATTGTTGGGGTTGCTGCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGTAATCGTAGCATAAATGCTCTTTAACTTGTGTTTGCAAGTAAATATTTTGGAATTCTGTGTTATATGTATGATGTATGAAATGTGTCTATTTGGGTAAGCATACTTGAATTATGATTGACAAAAATGCAAAACATAATAAGCACCTTTTATAGGCTTTGTTTTATATAGGGTGATATACGCAGAACTCATTCTACATTGTGCTAATTCTAATGATGAGAACTTGCTGATGAAGTTTTACACCTGAATTTCCTTAGTTGAGAAAGTGTAAGCTAATAATGAAAATGACCCCCAGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGAATTCACTAATCTATTGGATCCGTCAAAAAAAACATGCTGATTGAATTCGACACTGATTGAGCTTCAGCATTTGTGGATTCTGAACTCACTCATTGTTTACATAGTTTTTCATTTTTATCAGGAACAATTGTGAATAGTGTGATATACTTGAAACACAGAGTTGATTTTGTGCATTGTTTCTTAGCCAACTCCTTTGTATGTAATCAAAATTATTATATATAATTTGTTGGATAATTTTGGGTAATCAGATTGCTTTCCATTCTAACT

mRNA sequence

AGTTGACACTTTGACAGTCATATTTTGCTGAATTCATTCGCCATTTACTTTACATTTTGACAGTGTTATGAATTTGGCGCTTAATAATAATGCATTAATGCCCAAAACAAAAGCGTAGGGAAAAGATTAGGACCAAGAAGATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGAATTCACTAATCTATTGGATCCGTCAAAAAAAACATGCTGATTGAATTCGACACTGATTGAGCTTCAGCATTTGTGGATTCTGAACTCACTCATTGTTTACATAGTTTTTCATTTTTATCAGGAACAATTGTGAATAGTGTGATATACTTGAAACACAGAGTTGATTTTGTGCATTGTTTCTTAGCCAACTCCTTTGTATGTAATCAAAATTATTATATATAATTTGTTGGATAATTTTGGGTAATCAGATTGCTTTCCATTCTAACT

Coding sequence (CDS)

ATGAGCTTGTACTCGATAACTCATCTTCTTCCTCCTCCGCAACTCTCAATCTCCACCACCCCCACTTCTCCCCACCTTATTCCCACCACCACCACCACCACCACCACCACAACCACCAAACGCTCTATTCTCACCAGCTTACTCAGCCTCTCTCTTTCTCTCACCTTCACTCTTTCATCTCCATTATCCTCTTTTGCACTGCCTTCACTAAATTCACAATCACGACCCCCTTCTGTCTCTCCTACCACTCCCTTCTCTCAGTCCAAAAACTTGGCAATTGGGTTGGAAAATGGGAAAATTAGAGGTTGCCCACCAGTTAATCCTGGGTGTGTTACTACCAACCCAAAATCTTCCAATTTCGAATTCCCATGGCAGATTCCTTCTGATTCTACAGAAAATGCTGTTCAGAAATTGCAAGAAGCAATTTTGAGTACACAGAAAAATGCCGAAATACAAGTTGTGGAAGACACACCTAATGGACAATACCTTCGAGCTGTGGTTGATGGAGGATTTGGAAAAGACGTGATGGAATTCATGGTAAGAGGGGACGTTGTAACCTATCGCTGTATGGCCTCCAAGGTAACCTACATCTACCCCTTTACAACAGCTTTTGGGGATTCAAAAGGCCAGATAGAGAGAATGACCAAGATCGTAGAACACTTAGGTTGGTATGTTCCCAATTTGGACTTGATGGATTGA

Protein sequence

MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19765	Spo19765	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19765.1	Spo19765.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19765.1.utr5p.1	Spo19765.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19765.1.CDS.4	Spo19765.1.CDS.4	CDS
Spo19765.1.CDS.3	Spo19765.1.CDS.3	CDS
Spo19765.1.CDS.2	Spo19765.1.CDS.2	CDS
Spo19765.1.CDS.1	Spo19765.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19765.1.utr3p.1	Spo19765.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19765.1.exon.4	Spo19765.1.exon.4	exon
Spo19765.1.exon.3	Spo19765.1.exon.3	exon
Spo19765.1.exon.2	Spo19765.1.exon.2	exon
Spo19765.1.exon.1	Spo19765.1.exon.1	exon

Homology

[Close]

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|902151338|gb|KNA05513.1| (hypothetical protein SOVF_189680 [Spinacia oleracea])

HSP 1 Score: 445.3 bits (1144), Expect = 6.600e-122
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


		  
Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60
           MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS
Sbjct: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60

Query: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120
           PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF
Sbjct: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120

Query: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180
           EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV
Sbjct: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180

Query: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD
Sbjct: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 232

[Close]

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|731366997|ref|XP_010695373.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 315.1 bits (806), Expect = 1.000e-82
Identity = 172/244 (70.49%), Postives = 199/244 (81.56%), Query Frame = 1


		  
Query: 1   MSLYSITH---LLPPPQLSISTTPT------SPHLIPTTTTTTTTTTTKRSILTSLLSLS 60
           MSL+SI H   LL PPQLS S T T      SP L  +T +  + + +K SILT+ +SLS
Sbjct: 1   MSLFSIAHAHLLLLPPQLSFSNTNTTTTTIASPKLNISTKSHNSNSNSKPSILTNFISLS 60

Query: 61  LSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCV 120
           LSL+ T SS L S ALPSL S S+PP +SPTTPFSQSKNL +GLENGK+R CP VNPGCV
Sbjct: 61  LSLSLTFSSSLPSLALPSLKSPSQPPLLSPTTPFSQSKNLPLGLENGKVRACPSVNPGCV 120

Query: 121 TTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD--- 180
           TTNPKSSNFEFPW+IPS+S ENAV+KLQEAIL+TQKNA+IQVVED PNGQYLRA +D   
Sbjct: 121 TTNPKSSNFEFPWEIPSNSLENAVEKLQEAILNTQKNAKIQVVEDAPNGQYLRAEIDGGI 180

Query: 181 GGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 233
           GGFG+DV+EF+V+GDVVTYRCMA+KVT++YPFTTAFGDSKGQ ERM KIVE LGWY P+L
Sbjct: 181 GGFGRDVLEFLVKGDVVTYRCMATKVTFVYPFTTAFGDSKGQQERMKKIVEELGWYAPSL 240

[Close]

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|566206990|ref|XP_002322266.2| (hypothetical protein POPTR_0015s10960g [Populus trichocarpa])

HSP 1 Score: 271.2 bits (692), Expect = 1.700e-69
Identity = 149/231 (64.50%), Postives = 176/231 (76.19%), Query Frame = 1


		  
Query: 2   SLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSP 61
           S+  I H+LPP  LS S           T  T+   T K  + T+L SL+L  T TL+SP
Sbjct: 14  SMSLIGHVLPP-HLSTSKI---------TNFTSQNVTPKPILFTNLFSLAL--TVTLNSP 73

Query: 62  LSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFE 121
           L S A+PSLNSQ  PP +SPTTPFSQSKNL IGLENGKIR CP  NPGCV+TNP+SS+F 
Sbjct: 74  LPSLAIPSLNSQ--PPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFS 133

Query: 122 FPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVR 181
           FPW+IP + TENA+QKL+EAIL TQ+NA+IQV+EDTPNG+YL+A VDGGF  DV+EF+VR
Sbjct: 134 FPWRIPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVR 193

Query: 182 GDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI+  LGWY P+ D MD
Sbjct: 194 GDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSMD 230

[Close]

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|743831219|ref|XP_011023991.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Populus euphratica])

HSP 1 Score: 270.8 bits (691), Expect = 2.200e-69
Identity = 149/231 (64.50%), Postives = 175/231 (75.76%), Query Frame = 1


		  
Query: 2   SLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSP 61
           S+  I H+LPP  LS S           T  T+   T K  + T+L SL+L  T TL+SP
Sbjct: 12  SMSLIGHVLPP-HLSTSKI---------TNFTSQNVTPKPILFTNLFSLAL--TVTLNSP 71

Query: 62  LSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFE 121
           L S A+PSLNSQ  PP +SPTTPFSQSKNL IGLENGKIR CP  NPGCV+TNP+SS+F 
Sbjct: 72  LPSLAIPSLNSQ--PPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFS 131

Query: 122 FPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVR 181
           FPW+IP +  ENA+QKL+EAIL TQ+NA+IQV+EDTPNG+YL+A VDGGF  DV+EF+VR
Sbjct: 132 FPWRIPENDKENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVR 191

Query: 182 GDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI+  LGWY PN D MD
Sbjct: 192 GDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPNFDSMD 228

[Close]

BLAST of Spo19765.1 vs. NCBI nr
Match: gi|255540209|ref|XP_002511169.1| (PREDICTED: thylakoid lumenal 17.9 kDa protein, chloroplastic [Ricinus communis])

HSP 1 Score: 261.9 bits (668), Expect = 1.000e-66
Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 1


		  
Query: 50  LSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPG 109
           LSL+LT TLSSPL S A+PS NS S  P + PTTPFSQSKNLA GLE+GKIR CP  NP 
Sbjct: 48  LSLALTVTLSSPLPSLAIPSPNSLSASPLLPPTTPFSQSKNLATGLEDGKIRPCPSTNPS 107

Query: 110 CVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDG 169
           C++TNPK+S F FP  IP DSTENA+QKLQEAIL TQ NA+IQV+E+TPNGQYL+A VDG
Sbjct: 108 CISTNPKTSQFAFPLTIPGDSTENAIQKLQEAILKTQGNAKIQVIENTPNGQYLQAEVDG 167

Query: 170 GFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 229
           GFG+DV+EF+V+GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI++ LGWY  +L
Sbjct: 168 GFGRDVLEFLVKGDVVAYRSMATKVTYVYPFTTAFGDSKGQEERMKKIIDQLGWYTFSL 226

[Close]

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFQ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_189680 PE=4 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 4.600e-122
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


		  
Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60
           MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS
Sbjct: 1   MSLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSS 60

Query: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120
           PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF
Sbjct: 61  PLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNF 120

Query: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180
           EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV
Sbjct: 121 EFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMV 180

Query: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD
Sbjct: 181 RGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 232

[Close]

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B9S3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124510 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 7.200e-83
Identity = 172/244 (70.49%), Postives = 199/244 (81.56%), Query Frame = 1


		  
Query: 1   MSLYSITH---LLPPPQLSISTTPT------SPHLIPTTTTTTTTTTTKRSILTSLLSLS 60
           MSL+SI H   LL PPQLS S T T      SP L  +T +  + + +K SILT+ +SLS
Sbjct: 1   MSLFSIAHAHLLLLPPQLSFSNTNTTTTTIASPKLNISTKSHNSNSNSKPSILTNFISLS 60

Query: 61  LSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCV 120
           LSL+ T SS L S ALPSL S S+PP +SPTTPFSQSKNL +GLENGK+R CP VNPGCV
Sbjct: 61  LSLSLTFSSSLPSLALPSLKSPSQPPLLSPTTPFSQSKNLPLGLENGKVRACPSVNPGCV 120

Query: 121 TTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD--- 180
           TTNPKSSNFEFPW+IPS+S ENAV+KLQEAIL+TQKNA+IQVVED PNGQYLRA +D   
Sbjct: 121 TTNPKSSNFEFPWEIPSNSLENAVEKLQEAILNTQKNAKIQVVEDAPNGQYLRAEIDGGI 180

Query: 181 GGFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 233
           GGFG+DV+EF+V+GDVVTYRCMA+KVT++YPFTTAFGDSKGQ ERM KIVE LGWY P+L
Sbjct: 181 GGFGRDVLEFLVKGDVVTYRCMATKVTFVYPFTTAFGDSKGQQERMKKIVEELGWYAPSL 240

[Close]

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: B9IFC9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10960g PE=4 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 1.200e-69
Identity = 149/231 (64.50%), Postives = 176/231 (76.19%), Query Frame = 1


		  
Query: 2   SLYSITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSP 61
           S+  I H+LPP  LS S           T  T+   T K  + T+L SL+L  T TL+SP
Sbjct: 14  SMSLIGHVLPP-HLSTSKI---------TNFTSQNVTPKPILFTNLFSLAL--TVTLNSP 73

Query: 62  LSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFE 121
           L S A+PSLNSQ  PP +SPTTPFSQSKNL IGLENGKIR CP  NPGCV+TNP+SS+F 
Sbjct: 74  LPSLAIPSLNSQ--PPLLSPTTPFSQSKNLQIGLENGKIRPCPSTNPGCVSTNPQSSSFS 133

Query: 122 FPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVR 181
           FPW+IP + TENA+QKL+EAIL TQ+NA+IQV+EDTPNG+YL+A VDGGF  DV+EF+VR
Sbjct: 134 FPWRIPENDTENAIQKLEEAILKTQRNAKIQVIEDTPNGKYLQAEVDGGFDPDVLEFLVR 193

Query: 182 GDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI+  LGWY P+ D MD
Sbjct: 194 GDVVAYRTMATKVTYVYPFTTAFGDSKGQEERMKKILNELGWYAPSFDSMD 230

[Close]

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: B9RAE4_RICCO (Thylakoid lumenal 17.9 kDa protein, chloroplast, putative OS=Ricinus communis GN=RCOM_1505830 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 7.300e-67
Identity = 129/179 (72.07%), Postives = 150/179 (83.80%), Query Frame = 1


		  
Query: 50  LSLSLTFTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPG 109
           LSL+LT TLSSPL S A+PS NS S  P + PTTPFSQSKNLA GLE+GKIR CP  NP 
Sbjct: 48  LSLALTVTLSSPLPSLAIPSPNSLSASPLLPPTTPFSQSKNLATGLEDGKIRPCPSTNPS 107

Query: 110 CVTTNPKSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDG 169
           C++TNPK+S F FP  IP DSTENA+QKLQEAIL TQ NA+IQV+E+TPNGQYL+A VDG
Sbjct: 108 CISTNPKTSQFAFPLTIPGDSTENAIQKLQEAILKTQGNAKIQVIENTPNGQYLQAEVDG 167

Query: 170 GFGKDVMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNL 229
           GFG+DV+EF+V+GDVV YR MA+KVTY+YPFTTAFGDSKGQ ERM KI++ LGWY  +L
Sbjct: 168 GFGRDVLEFLVKGDVVAYRSMATKVTYVYPFTTAFGDSKGQEERMKKIIDQLGWYTFSL 226

[Close]

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Match: I1KC20_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G169300 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.000e-65
Identity = 139/228 (60.96%), Postives = 176/228 (77.19%), Query Frame = 1


		  
Query: 5   SITHLLPPPQLSISTTPTSPHLIPTTTTTTTTTTTKRSILTSLLSLSLSLTFTLSSPLSS 64
           S+   L PP  S S   T+P L    TT T      + +L +LLSL+L++T  L+SPL S
Sbjct: 2   SLMSSLLPPLASSSYINTAPKL---KTTHTPNLVLGQRVLPNLLSLALAVT--LASPLPS 61

Query: 65  FALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNPKSSNFEFPW 124
            A+PSLNSQ  PP +S TTPFSQSKNL +GLENGKIR CP +NPGC++TNPKSS+F FPW
Sbjct: 62  HAIPSLNSQ--PPPISLTTPFSQSKNLELGLENGKIRPCPSINPGCISTNPKSSSFSFPW 121

Query: 125 QIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVDGGFGKDVMEFMVRGDV 184
            IPS+S+++A+QKL+EAIL TQKN + Q VEDTP+GQYL+A VDGGFG+D++EF+V+GDV
Sbjct: 122 LIPSNSSDDAIQKLREAILKTQKNVKFQPVEDTPDGQYLQAEVDGGFGRDILEFLVKGDV 181

Query: 185 VTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           V YRC+A KVTY+YPFTTAFGDSKGQ  R+ +I + LGWY P+ D M+
Sbjct: 182 VAYRCVAMKVTYVYPFTTAFGDSKGQEARLKQINDQLGWYAPSFDSME 222

[Close]

BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
Match: TL1Y_ARATH (Thylakoid lumenal 17.9 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=At4g24930 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 4.700e-51
Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1


		  
Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLI-----PTTTTTTTTTTTKRSILTSLLSLSLSLT 60
           MSL +   L+ PP+      P S  L+     P      ++T+   S+L  L+S +L+++
Sbjct: 1   MSLVASLQLILPPR------PRSTKLLCSLQSPKQEQELSSTSPPISLLPKLISFALAIS 60

Query: 61  FTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNP 120
            T  SP  + A+PSL+S S+P     TTPF+QSK +  GL NGKIR CP  NPGCV+TNP
Sbjct: 61  LTSFSP--ALAIPSLSS-SQPL----TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNP 120

Query: 121 KSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD-GGFGKD 180
            SS+F FP  IP   T++ ++KL+EAI+STQKN +  V+EDTP G+Y+ A V+ GGF +D
Sbjct: 121 TSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRD 180

Query: 181 VMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           VMEF+V+ DVV YRCMA+KVT++YPFTTAFGDSKGQ ER+ K+++ LGWY P  + M+
Sbjct: 181 VMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225

[Close]

BLAST of Spo19765.1 vs. TAIR (Arabidopsis)
Match: AT4G24930.1 (thylakoid lumenal 17.9 kDa protein, chloroplast)

HSP 1 Score: 202.6 bits (514), Expect = 2.600e-52
Identity = 119/238 (50.00%), Postives = 163/238 (68.49%), Query Frame = 1


		  
Query: 1   MSLYSITHLLPPPQLSISTTPTSPHLI-----PTTTTTTTTTTTKRSILTSLLSLSLSLT 60
           MSL +   L+ PP+      P S  L+     P      ++T+   S+L  L+S +L+++
Sbjct: 1   MSLVASLQLILPPR------PRSTKLLCSLQSPKQEQELSSTSPPISLLPKLISFALAIS 60

Query: 61  FTLSSPLSSFALPSLNSQSRPPSVSPTTPFSQSKNLAIGLENGKIRGCPPVNPGCVTTNP 120
            T  SP  + A+PSL+S S+P     TTPF+QSK +  GL NGKIR CP  NPGCV+TNP
Sbjct: 61  LTSFSP--ALAIPSLSS-SQPL----TTPFTQSKFVQTGLLNGKIRPCPSTNPGCVSTNP 120

Query: 121 KSSNFEFPWQIPSDSTENAVQKLQEAILSTQKNAEIQVVEDTPNGQYLRAVVD-GGFGKD 180
            SS+F FP  IP   T++ ++KL+EAI+STQKN +  V+EDTP G+Y+ A V+ GGF +D
Sbjct: 121 TSSSFSFPLTIPETDTQDPIEKLKEAIMSTQKNPKFVVLEDTPYGRYVEAEVEGGGFSRD 180

Query: 181 VMEFMVRGDVVTYRCMASKVTYIYPFTTAFGDSKGQIERMTKIVEHLGWYVPNLDLMD 233
           VMEF+V+ DVV YRCMA+KVT++YPFTTAFGDSKGQ ER+ K+++ LGWY P  + M+
Sbjct: 181 VMEFLVKQDVVAYRCMATKVTFVYPFTTAFGDSKGQEERLKKLIDQLGWYAPTFESME 225

The following BLAST results are available for this feature:

BLAST of Spo19765.1 vs. NCBI nr
BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
BLAST of Spo19765.1 vs. TAIR (Arabidopsis)

BLAST of Spo19765.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902151338\|gb\|KNA05513.1\|	6.6e-122	100.	hypothetical protein SOVF_1896...	[more]
gi\|731366997\|ref\|XP_010695373.1\|	1.0e-82	70.4	PREDICTED: thylakoid lumenal 1...	[more]
gi\|566206990\|ref\|XP_002322266.2\|	1.7e-69	64.5	hypothetical protein POPTR_001...	[more]
gi\|743831219\|ref\|XP_011023991.1\|	2.2e-69	64.5	PREDICTED: thylakoid lumenal 1...	[more]
gi\|255540209\|ref\|XP_002511169.1\|	1.0e-66	72.0	PREDICTED: thylakoid lumenal 1...	[more]

BLAST of Spo19765.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QFQ5_SPIOL	4.6e-122	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B9S3_BETVU	7.2e-83	70.4	Uncharacterized protein OS=Bet...	[more]
B9IFC9_POPTR	1.2e-69	64.5	Uncharacterized protein OS=Pop...	[more]
B9RAE4_RICCO	7.3e-67	72.0	Thylakoid lumenal 17.9 kDa pro...	[more]
I1KC20_SOYBN	1.0e-65	60.9	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo19765.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
TL1Y_ARATH	4.7e-51	50.0	Thylakoid lumenal 17.9 kDa pro...	[more]

BLAST of Spo19765.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G24930.1	2.6e-52	50.0	thylakoid lumenal 17.9 kDa pro...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36783	FAMILY NOT NAMED	coord: 50..232 score: 8.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0010103	stomatal complex morphogenesis
cellular_component	GO:0009543	chloroplast thylakoid lumen