Spo19969.1 (mRNA)

Overview
NameSpo19969.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_217 : 831023 .. 834127 (-)
Sequence length579
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAATTTGAAGAAAATGAAGCTGAATAATGAAGATGTGAAAAAATTCAATAGTATGGAGGATGAAATTGATGTCTGTAAGTATTCTTCTTGTGAGTTTGATTGATAATTTATTTGAGAGAAATTATGTTAATTTGGAGTTGAATTCTATTAGACTATTTTAGTCAATGCTGAGATCGTTCTTGCGATTTGCATTTGTACAGATTTCTCTTATACGCTTTGAGTGTGATGCTGATTTCTATATAAAAAAATAGAATTATCAAAATAAAATTAAATAATGGTTGTATTTTGTTTGGCGGTTTTGATTTTCTTTAGTGGTTGGGGATGTCGAAATTGAAATGTATAGTTGAAGTTGAAGTTGTATGAAAGAGGAGAAAACTGGATAGGAATCATACTCATTTACTAAAATTGATTGGTTCTGCCTCCCCTGGGATTAATCTCTATTCTCTAAAGGTTTTAGAAGATGTGTAGAGAATTGTGATATCGTTTTCTTAGCTTTGGATTTCTAGGTTTTCTTTGCAGACTCAGATTTCTACGTTCGTGTTTTTTTTTTTCTTTTTTTTTTTCTGGGTTCTTTGTTTTTATTATTTGTTTTTGGTTGACATATACACATTGGTAATCGTTATTTGATTTCATATGATAATGTGTATCATATTAACAGACAAAGATCCCTCGGTGAAAGGTCTCTTAATGACTTTCTTATGTCGCCTCGGGTGCAAATCTAGAAATGCTGATAATATAAGTCGCTTACTAGACCATCTAGAAAATATTGTTTGCTCCTGTCGTCGATCTTTGATTACTTCCTGTTTTCAGTTTGCTTTAAAGTTTCTCTCCTAAAATCTTTCCGTGATTTCAAGCAAACTGAAAACAGGAAGTTTACTTATTGAAAACAGGAAGTAATAGGGTTGATCTAGAAAATATTGTTTGCTCTGGTAGTTGTTCTTCGATTACTTCCTGTTTTTAGTTGCTTTAAAGTTTCTCTCCTGAATCTTTCAATGATAAAATTGTTGTTCTATGTTGATCAACCCTATTCAATTATGTTGCATGTGTGACTAATGATTTGTTTCTCATGTCAGGTTTGTAAGTTCTTTACAGATAATCAGTGATACGGATACCCTCCAGAAATTATGGTTTATGCTTTTCTGACATCTGAAATGATTGTTCCCTGCTGATACTTTCCAGGTTCGTTCTTTTTCTTTATATTGTTTTCAAGTTATGGTTTTTTTAATGATCTGAACTACAACTCTTGAATGGCTTTAGAAACAAATGCAAACAACTGATTTCTTTGAACCCCAATTTCAATTTTTAACGGGAGATTAATAGTTGTGAATATATGTGGTTAAGTAAATAATAATAACACAATTGGTTTAATTTATTTACATGAATGATTGAATATTTACATAGATAAGTGTATTGCCCTAACTTCCTAAATCGCTCTCTAATTCAGGTCGTCTACAAACCTCTGCAAGTAATTTAAGAGCAGTGTGTTAGAGAGAGATAGAGAGTAGAGAGGAGCAGCAATGGATTTCGTCAGCCCAGATGGCCTCCGCCCAGCCGGTCATCGTCCCTTGGAGGAGATGAGGCAGCTTCGCGCTGAATTGGCGCCGTCTCTAAAGCTGACAGGTAATTTCCTAGCTTTTTTTCCAATTTTATTTTAACTGTGTTTGCGAATAATAGAAATTATAAGTTTGAATCTGGCAATTGGGTGTAGCTCAGCTGTTATCGAGATGGGTAACAGCTGGACATCTACTAATTGAGAATGCAAAGCTGTTTTAATTGTTGGTCATAATGTTGGCAAATCCACTCTNGACATCTACTAATTGAGAATGCAAAGCTGTTTTAATTGTTGGTCATAATGTTGGCAAATCCACTCTTTTTAATGTTGTTGTAAGCCAGTTTTTCTCCTTCATTGACTCTCAAATATGTTGTTTGGTTCTGTCTGTAAGGTGTTTAATCAATCAAATGACAACATTGAGAAATGCCTCAAAATTTGTTTGTTTTTTGAATTTCTAAGATTAATTTTTTGTTCATTACCTTAATGATTGTGGGTAGAGGTTGATTGTTATTATTTGGGGTTTGTCTTTATTGGCTATGGTAGCTTCAGGCTGTTTTGCTTCCTTGAGTTTAGACTTGGACTGTGTTGGTCCATTTGAGATCTTGCTATTTTGTAAGTGAAGTGTACTATTTAAGTGGAATGACTTGAAATAGAAAGCAAGGTAGTAAGTTGTGAATAAGATAGCAATGACTCTATTCCCCTGTATTAATCCCGTACCTCAGATTGGGCTCCTCTAGGTGTAATATATAATAAAGATACCATGAAAATTAACTTCAGAATGCCAAGTCTAACTGACATATTTTGTACAGTCGTACATTTTCTTTCTTAATGTCCATTTTTGGTTGCGAAACTGTGAACCATCTGCTTTGTAGAGATTTTGCTGACCTATTCTCTGATTTCTAGCATGGCATTGACAAGGACAATGCAATCTAGGAGTAATAGCAAAGTAAAGAGAGGTGACATAAGTACGCGGCTCACTATATATGAGTTTGCTCTGTTGTAGACCATCTCTTTGACATCGTTGCTCTGTTGGTGCTGTTTTTTTTTGTTATTGTTGTTGCTATTATTGTTGTTGTTTCTGCTGCTACTACTACTGCTTATGTTTAGACCTGATATTGCTGTCAAGCCGTTTTTTCCCCAAGGAATAATTATCTCTCTGTTATCTAAATGAATAATGCAAGACTATATGTTTTAATGCCTGTTTAAGTGGATATTTAAAAGATTAGGTAATCCAAAGACTAATATATAGACCCTAACTAATCCGAACTTGAGATGGGTTGGTTGCCAGATGGGAGGAATGCCGGTGCATTTGCATTTTAGGTGGTGTTGTGTTTATGTATGGCTTGAATTCATGAATTTATCCTAATTGTTATTTTGAATTTTTATGTAACAGTTGATGGATTGAAGGCTTTCGAGGTGTACACAGATGGATCGCAGATGATGTGGCTCTAAGGAGGGCAAATACAGTTTGGTAGCACAGTTAGTTTTGTAGTTTGTACCCCCAACCCAATTCTTTGACGCAAAAAATATATGGAAAAGATAAGATTTCTCAG

mRNA sequence

GAATTTGAAGAAAATGAAGCTGAATAATGAAGATGTGAAAAAATTCAATAGTATGGAGGATGAAATTGATGTCTGTTTGTAAGTTCTTTACAGATAATCAGTGATACGGATACCCTCCAGAAATTATGGTTTATGCTTTTCTGACATCTGAAATGATTGTTCCCTGCTGATACTTTCCAGGTCGTCTACAAACCTCTGCAAGTAATTTAAGAGCAGTGTGTTAGAGAGAGATAGAGAGTAGAGAGGAGCAGCAATGGATTTCGTCAGCCCAGATGGCCTCCGCCCAGCCGGTCATCGTCCCTTGGAGGAGATGAGGCAGCTTCGCGCTGAATTGGCGCCGTCTCTAAAGCTGACAGGCTGTTTTGCTTCCTTGAGTTTAGACTTGGACTGTGTTGGTCCATTTGAGATCTTGCTATTTTTTGATGGATTGAAGGCTTTCGAGGTGTACACAGATGGATCGCAGATGATGTGGCTCTAAGGAGGGCAAATACAGTTTGGTAGCACAGTTAGTTTTGTAGTTTGTACCCCCAACCCAATTCTTTGACGCAAAAAATATATGGAAAAGATAAGATTTCTCAG

Coding sequence (CDS)

ATGGATTTCGTCAGCCCAGATGGCCTCCGCCCAGCCGGTCATCGTCCCTTGGAGGAGATGAGGCAGCTTCGCGCTGAATTGGCGCCGTCTCTAAAGCTGACAGGCTGTTTTGCTTCCTTGAGTTTAGACTTGGACTGTGTTGGTCCATTTGAGATCTTGCTATTTTTTGATGGATTGAAGGCTTTCGAGGTGTACACAGATGGATCGCAGATGATGTGGCTCTAA

Protein sequence

MDFVSPDGLRPAGHRPLEEMRQLRAELAPSLKLTGCFASLSLDLDCVGPFEILLFFDGLKAFEVYTDGSQMMWL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo19969Spo19969gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo19969.1Spo19969.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19969.1.utr5p.3Spo19969.1.utr5p.3five_prime_UTR
Spo19969.1.utr5p.2Spo19969.1.utr5p.2five_prime_UTR
Spo19969.1.utr5p.1Spo19969.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19969.1.CDS.3Spo19969.1.CDS.3CDS
Spo19969.1.CDS.2Spo19969.1.CDS.2CDS
Spo19969.1.CDS.1Spo19969.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19969.1.utr3p.1Spo19969.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19969.1.exon.5Spo19969.1.exon.5exon
Spo19969.1.exon.4Spo19969.1.exon.4exon
Spo19969.1.exon.3Spo19969.1.exon.3exon
Spo19969.1.exon.2Spo19969.1.exon.2exon
Spo19969.1.exon.1Spo19969.1.exon.1exon


Homology
The following BLAST results are available for this feature:
BLAST of Spo19969.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19969.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19969.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19969.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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