Spo20027.1 (mRNA) | SpinachBase

Overview


Name	Spo20027.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Oxidoreductase/ transition metal ion binding protein
Location	SpoScf_01803 : 17153 .. 22844 (+)
Sequence length	727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTGTCAAAATGGCATTATGGAAAAGAAACAACATTGTTGCTCCCTTCATCACTGAAAACTGAAAATTATGCAAACATTAGGCCGTTCCTGTTCCTGCTCCTGCTTCCGAACCCCATCTCTTTCTCCCAAATTTCCATGGAAGAACTCCTCTCTCCTCTTCTGCAACTCAACCAACAATTTTACCGCCATTAGAGCTTCTTCTTCTTCAATTGACAGTTTAGACGAAGATGGTAAAAATGGAGTTACCGCGAAAGCGTCAGGAACAAGCGCCAGAGGTAGAAGACTCCTGAAATTGCGTGAAGAGAAGCACCGTAGAGAACACGAACGCCTCCATAATTACCCTTCTTGGGCGAAGTATTTCTCTTTCTCTATCTCTTAATTTCATTACGAAGTATTTGAAAATGCTAAAAGCGAAACTGTTAGTAAGTAGAGAGTATTAACTAAACATTAATAATGAATCGACCTGTTTTTTGTCATAAACTAATGAGGAGTACCCTTGGTAAGGGCAGTTTCTATATCCAATTCTACGGTACAATTAAGGCTATTTCTTTTGCTTATTTGCTCATTTGCGCATTTGGTGGTACAACCGGTTGAACCACCAATTCTTATTTACTCATTTGGGGTTATTTGATGATGAACAGAGTTTTAGAAGATGCGTGTAAGAATGATTTGGAACTTAGAACACTTCTTGGAGATAGTATTGGTAATCCTGAACTCATGCGCAAAAGGGTACTCTTCTTTTTCTTCCCCTTTTATGTTATTTGCTATTTTACAATTATGTTGTTTCATTGTTGCTAATTTGATAGGCTGCCTATACTGTATACTAAAAAAAAAAACAAAAAATAGTTTGTGAATTGTTGCCCATGGTGGGGTGTCACTAAATAGTTCATGTTCATGTTTGGGTTGTAAGCCGTTTTAGATATTTGAATTGCTAATTCCAATTTAATGGTCATTTTATACTAGTAATAGATAGCCCTAAGTTAAGAGCTAGGTATTACATGAGAAAATAGCGAGGAGATGATTAATTCTCTAATTTGCATTTGGTTGGGCGTGATGATATAAAACTCATGAATGAGAGTTCTCTTCACTTGAATTTGAGAATTTCCTTTAGCCGAACTTATTAGAACTTATTGTAGTGATGAACTATTGAACTTGGATAACCCTTATTGGCCCTCAACTTTACTTATCGAACATATTTTAACTTATTGGCCATAACTTAACCTGTGTTTACTTTTCTTGAAACAAGTGAAAATAAAATTAGAAGCTCAGAACCTAATTAAAATCCAGTGTTCACATTATTCATTTTTTGGGTAAAGCATGCTTCTATAACATACCATTATCCACGTCTCTCTCACATGTCTGGAGATTGATGTATGGGGTAGAGGAGAATTAATTGCATGGGCTTTAAAATGGTGTTTCTAATGGACTTCTGATTGTGTACTTTCTCTGTTTTAACCAATTAGCCACATTTTAGGATCTTTGGAAAAAGTTGTTTCTTTTTCTGAAATTGTAACAGTTTATGATTAGTTTTCCTACGTTGTCCATAAATTAAGTGGATTTGGAAGGCCAGAAATAAAGCTACGGTCATAACAGTAATTTTGAATTTCATGTCATATCCTTTATTGTGAGAGGTTTGGACAACATGACAAGCGACAACTGTTTTCGTTGGATGAGTTCATATTAGTGGTTAGACTGGGTACTTGGCAGATGTTAGCAGTCTGGTATTCTGTCTGTCTTTGGTTCTGGATGGCCTAACCTGATAGCCATTGGCCCATTGCTTTTCTCTTGTATGAGTGATTGTTATTTTAGAGTTGGATTGGACTAATTAAACAATGGATAATAAAATTTATGGTCCTTTGATTGACCTTTGTAAAAGAGTCAAAAGTGTAAACCAAAAAAAAAAACAGTTCTTATGATTTCCCCCATAAATTTCCAGCAGAATTTGATCTTATCGGAAACTCAGCATGTGACAGCTGAGTCTGAAACTCTAGGTATCATTTGGTTGATCATAGGAAGTAAAAGTTCTTAGGAATTTTTTTTTCCCATGTATTGACATTTCCTAGGAAGTAGGAAATGTTGTTTGGTTGAACATATGAAGTAACTTCCCATGGGAAAGTCCACTTACCTAGGGGGACCTAGGTTGTAACTTCCTCCATTTTGTGGGAAGTGGAACTTCCTATGAAGTTTGACTTCCCATGTTTTTGCAAACCAAACAACACTTGAAATAGTGTGTTTCATCTTTTTGTCATCTTATGATGCTTCCATGCCTTTGAAGCTATATCTGTGAAAAACAAGCAGTTAATGACTTTATGTTATTGAAGCTTATGTTCTTAAGTTTGTAGCCATTTTTTTTGGTAATGTTGCATAAGCTGCAGAACGGGTTGTACCTCGTCAGTTCTCTTCAATAAAAATTTTAACTAGGTTGTACGGTTGTACCACAATTTTCAGAAACTCAATGTCTCAACTCTTAGTTATAAAGAAGTGAAATGGCCTACTTGGCACTTGGCATATAGTAAAAATTTCTAACTGCTGGTTGCTTACAGCAGAAAATCATTACTTTATACAAAGAAATAGTCTTTTGGTTAACCTGCTTCTATCTTATCTTCAAAAAGGATTAGTCAAGGAAAATTACATCATAAGGACATTTGGAAACAAAAAGAACATGGTTGCCTAGGAAGTTTTGAAACGAAATCTTGATACTAATGATGTGTTGGACATTATATTATTACTCATGACCTTTTATGTTTTTCTTTTCATTGTTATTTCTTGTGTCTTTTTTACAGATTATTCTTTGCTTATATCTTGCTAAGGAAAACCTTTAATTCGATGTGAATTGTTTATAAGGTTGAGGAAAGAGTTAGGAAGAAGGGGCGAGACTTCCAAAAATCTAAGACTGGCTCTGTCCTTGCATTCAAAGTCAGCTTTAGAGAGTAAGTTAAGAATTTTGTTTCAGAATTACCTCCTTGCTAATCTCTTGATATAGTTGATGTCAAAGTTGAATAATAATTTAGTTTTGCCCCTCTTTTTTCTTTTGAGGTTTACCAATCTACTCTGAAAAGTGTCTAACAAACCCGATGGAATTTGGGGTATAGCTTCTCCTCATCAAGGTTTGAAGTTCCTTTTTTCGGCTTTGAACACGGAAGTCAAGTTTTAGCTTGATAGCGTCACTTCACCTTTCATTTATTATGTGGATAAATGGCTTCACAATAGCTCGAGGCCATGAGCTTCTTTTTTTCCTCAGCTTCCTTTTGTATCTGGGTAGGGGTGACCACAAAACAAAGTGTCTCCTGATTAATTTGGATTCTGATTGACTGAATGTTCCTCTTGGATTTTCTATCAGGGAATAACTTTTAGGACAGTGGGAGAACTTTAAAAAGATTTTCTTTGACCTTAGACTGATTTTATGGGGGCAAGCGTAGATGAGTCATGACTCATGAGTGTTTCAGGAAGAAAATTAATGCCTAAATACCTCCGTAGTCCATGCGGCTTTGCTTGTTATAGGTAAACTTCATGGGGCTAACAATAGTTCATCGTGTATCAAGTAATTTCATTTCCATATTGTTATGAAGAGTAAAAGGTACACCCTATATGCATTTGCCTAGTGAAAAGCTTTTTTGAACTAGGGAGTCATGCTTATGTATGAATTCTGTTCAAGAGGAACCAACTAACATCTGTAAGTCTGTAACTTCCTTAAATTGGCAATTTTATAAGGCTTTTAGCTGTGTTGATATAGCTATTTTGTTATCTATTCCCTTGTTGAAGACACTCTGTAGTTGATAGGGAACTTTGTAGCTTAATCCTTATGTGAAGTATGATATACATGCATGCACAAACTTTTGAACTGTAGACGTGTATGCCTGATATCCATGTAGCAACCATTACTTTTATTACCTAGTGTAGTTGATGGGTTTACATGTTAATACTTAATAGTGTTAGCTCACCTCATGTTTATGTATTTGGTGAAACTTCTGGTTTTGTATTTCTGTGGCTGTTTTCCTTTATCCCATTTTTTGACTGGTTCTTGAATCTTGGCAGCTTTAATCCTCTAGATTCATACATCTGGGTGGAACTGTTTGGGTCACCATCTGATCGGGATGTCGATCTGTTTGGAAGTGTAAGTAAAATGTATCCTGTCATTTTTTTTGAGGGAAAAGATGTATGTCATTTGTTGACCATTGGACCATAATATTACATTCTGTGAAGCAATCTTCTCCTAGACGCTTCTCACATGCACTATATGCTTCCTCTTTTAGCTATAACTCATTACTGTTGTCAATATCGTAGGTTATCCAATCTTGGTATGTGATGGGACGCTTAGGGGCTTTCAATTCTTCAAATTTGCAGGTAATTTCCTTTTCATTTTCCCTTCATTTGGAGAACTGTGAGCATGTTGCATCTTGAAAGCTTATGTTTATGTAGCTTGTATGGTGTTGATAATTATAGTCAAATTTATCATTTTCTGAAACCTCATCACTTACACACTACAAGGCAATTAACTTGTGATCTATATAAATCAACTATGACTTGAAAAATAAAGCAGATAACAGGGTGAAACTGACCTTTGAAAATGGATGTGTTTTTGTATTATTCAGGAAAGTTTCAGAAATTTAATGGAGCAATAAATATGATGTTTTTCACAATACTTAGTTGGTTGTTGTGGTTGGTGATTACCGTTGCAGTAGTTATTTTAAGAATCTTTTCTCCCATTTGAGCATTCTAAATGAAATTGAAAGATAAATGAATTACTGACTGTTGAAGGTTTCTTCACGAGAATATAGTTCCTGAACTGATTAAATATGCTTTGAAGGATGTCTGAAATAGTCGGGTAGATTACATACTTGATAATTAGTCTGTCTCAATCTTTTTCTCTCCCCCCCCCCCCCCCCCCCANGAAAAGCTTTTTTGAACTAGGGAGTCATGCTTATGTATGAATTCTGTTCAAGAGGAACCAACTAACATCTGTAAGTCTGTAACTTCCTTAAATTGGCAATTTTATAAGGCTTTTAGCTGTGTTGATATAGCTATTTTGTTATCTATTCCCTTGTTGAAGACACTCTGTAGTTGATAGGGAACTTTGTAGCTTAATCCTTATGTGAAGTATGATATACATGCATGCACAAACTTTTGAACTGTAGACGTGTATGCCTGATATCCATGTAGCAACCATTGCTTTTATTACCTAGTGTAGTTGATGGGTTTACATGTTAATACTTAATAGTGTTAGCTCACCTCATGTTTATGTATTTGGTGAAACTTCTGGTTTTGTATTTCTGTGGCTGTTTTCCTTTATCCCATTTTTTGACTGGTTCTTGAATCTTGTCAGCTTTAATCCTCTAGATTCATACATCTGGGTGGAACTGTTTGGGTCACCATCTGATCGGGATGTCGATCTGTTTGGAAGTGTAAGTAAAATGTATCCTGTCATTTTTTTTGAGGGAAAAGATGTATGTCATTTGTTGACCATTGGACCATAATATTACATTCTGTGAAGCAATCTTCTCCTAGACGCTTCTCACATGCACTATATGCTTCCTCTTTTAGCTATAACTCATTACTGTTGTCAATATCGTAGGTTATCCAATCTTGGTATGTGATGGGACGCTTAGGGGCTTTCAATTCTTCAAATTTGCAGGTAATTTCCTTTTCATTTTCCCTTCATTTGGAGAACTGTGAGCATGTTGCATCTTGA

mRNA sequence

CTCTTGTCAAAATGGCATTATGGAAAAGAAACAACATTGTTGCTCCCTTCATCACTGAAAACTGAAAATTATGCAAACATTAGGCCGTTCCTGTTCCTGCTCCTGCTTCCGAACCCCATCTCTTTCTCCCAAATTTCCATGGAAGAACTCCTCTCTCCTCTTCTGCAACTCAACCAACAATTTTACCGCCATTAGAGCTTCTTCTTCTTCAATTGACAGTTTAGACGAAGATGGTAAAAATGGAGTTACCGCGAAAGCGTCAGGAACAAGCGCCAGAGGTAGAAGACTCCTGAAATTGCGTGAAGAGAAGCACCGTAGAGAACACGAACGCCTCCATAATTACCCTTCTTGGGCGAAAGTTTTAGAAGATGCGTGTAAGAATGATTTGGAACTTAGAACACTTCTTGGAGATAGTATTGGTAATCCTGAACTCATGCGCAAAAGGGTTGAGGAAAGAGTTAGGAAGAAGGGGCGAGACTTCCAAAAATCTAAGACTGGCTCTGTCCTTGCATTCAAAGTCAGCTTTAGAGACTTTAATCCTCTAGATTCATACATCTGGGTGGAACTGTTTGGGTCACCATCTGATCGGGATGTCGATCTGTTTGGAAGTGTTATCCAATCTTGGTATGTGATGGGACGCTTAGGGGCTTTCAATTCTTCAAATTTGCAGGTAATTTCCTTTTCATTTTCCCTTCATTTGGAGAACTGTGAGCATGTTGCATCTTGA

Coding sequence (CDS)

ATGCAAACATTAGGCCGTTCCTGTTCCTGCTCCTGCTTCCGAACCCCATCTCTTTCTCCCAAATTTCCATGGAAGAACTCCTCTCTCCTCTTCTGCAACTCAACCAACAATTTTACCGCCATTAGAGCTTCTTCTTCTTCAATTGACAGTTTAGACGAAGATGGTAAAAATGGAGTTACCGCGAAAGCGTCAGGAACAAGCGCCAGAGGTAGAAGACTCCTGAAATTGCGTGAAGAGAAGCACCGTAGAGAACACGAACGCCTCCATAATTACCCTTCTTGGGCGAAAGTTTTAGAAGATGCGTGTAAGAATGATTTGGAACTTAGAACACTTCTTGGAGATAGTATTGGTAATCCTGAACTCATGCGCAAAAGGGTTGAGGAAAGAGTTAGGAAGAAGGGGCGAGACTTCCAAAAATCTAAGACTGGCTCTGTCCTTGCATTCAAAGTCAGCTTTAGAGACTTTAATCCTCTAGATTCATACATCTGGGTGGAACTGTTTGGGTCACCATCTGATCGGGATGTCGATCTGTTTGGAAGTGTTATCCAATCTTGGTATGTGATGGGACGCTTAGGGGCTTTCAATTCTTCAAATTTGCAGGTAATTTCCTTTTCATTTTCCCTTCATTTGGAGAACTGTGAGCATGTTGCATCTTGA

Protein sequence

MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVTAKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGSVIQSWYVMGRLGAFNSSNLQVISFSFSLHLENCEHVAS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20027	Spo20027	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20027.1	Spo20027.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20027.1.exon.1	Spo20027.1.exon.1	exon
Spo20027.1.exon.2	Spo20027.1.exon.2	exon
Spo20027.1.exon.3	Spo20027.1.exon.3	exon
Spo20027.1.exon.4	Spo20027.1.exon.4	exon
Spo20027.1.exon.5	Spo20027.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20027.1.utr5p.1	Spo20027.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20027.1.CDS.1	Spo20027.1.CDS.1	CDS
Spo20027.1.CDS.2	Spo20027.1.CDS.2	CDS
Spo20027.1.CDS.3	Spo20027.1.CDS.3	CDS
Spo20027.1.CDS.4	Spo20027.1.CDS.4	CDS
Spo20027.1.CDS.5	Spo20027.1.CDS.5	CDS

Homology

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BLAST of Spo20027.1 vs. NCBI nr
Match: gi|902214021|gb|KNA17395.1| (hypothetical protein SOVF_079650 [Spinacia oleracea])

HSP 1 Score: 401.7 bits (1031), Expect = 7.900e-109
Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = 1

		  
Query: 1   MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVT 60
           MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVT
Sbjct: 1   MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVT 60

Query: 61  AKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPE 120
           AKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPE
Sbjct: 61  AKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPE 120

Query: 121 LMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGS 180
           LMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGS
Sbjct: 121 LMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGS 180

Query: 181 VIQSWYVMGRLGAFNSSNLQVISFS 206
           VIQSWYVMGRLGAFNSSNLQ+ + S
Sbjct: 181 VIQSWYVMGRLGAFNSSNLQLTNSS 205

[Close]

BLAST of Spo20027.1 vs. NCBI nr
Match: gi|731367577|ref|XP_010695685.1| (PREDICTED: uncharacterized protein LOC104908290 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 287.3 bits (734), Expect = 2.200e-74
Identity = 166/225 (73.78%), Postives = 177/225 (78.67%), Query Frame = 1

		  
Query: 1   MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFC------------NSTNNFTAIRASSS-S 60
           MQTL     CS F  P +   FP  + SL  C            NS NN TAIRASSS S
Sbjct: 1   MQTL---LGCSYFH-PQI---FPLPSFSLNHCSNHGKTYLQWKTNSYNNLTAIRASSSTS 60

Query: 61  IDSLDED--GKNG-----VTAKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLED 120
           IDSL+E+  G  G     V AK SGTSARGRRLLKLREEKHRRE +RLH+YPSWAKVLED
Sbjct: 61  IDSLEEEDHGNRGERVTDVAAKGSGTSARGRRLLKLREEKHRREQQRLHDYPSWAKVLED 120

Query: 121 ACKNDLELRTLLGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDS 180
           ACKNDLELR +LGDSIGNPELMRK+VEERVRKKGRD QKSKTGSVLAFKVSFRDFNPLDS
Sbjct: 121 ACKNDLELRAVLGDSIGNPELMRKKVEERVRKKGRDLQKSKTGSVLAFKVSFRDFNPLDS 180

Query: 181 YIWVELFGSPSDRDVDLFGSVIQSWYVMGRLGAFNSSNLQVISFS 206
           YIWVELFGSPSDRDVDLFGSVIQ+WYVMGRLGAFNSSNLQ+ + S
Sbjct: 181 YIWVELFGSPSDRDVDLFGSVIQAWYVMGRLGAFNSSNLQLANSS 218

[Close]

BLAST of Spo20027.1 vs. NCBI nr
Match: gi|567912383|ref|XP_006448505.1| (hypothetical protein CICLE_v10015943mg [Citrus clementina])

HSP 1 Score: 259.6 bits (662), Expect = 4.900e-66
Identity = 134/169 (79.29%), Postives = 145/169 (85.80%), Query Frame = 1

		  
Query: 41  IRASSSSIDSLDEDGKNG----VTAKASGTSARGRRLLKLREEKHRREHERLHNYPSWAK 100
           I A++S        G+N     V AK SGTSARGRRLLK+REEK RREH+RLHNYPSWAK
Sbjct: 61  IHAAASEDGGRSSSGRNERNEVVGAKGSGTSARGRRLLKVREEKRRREHDRLHNYPSWAK 120

Query: 101 VLEDACKNDLELRTLLGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFN 160
           VLEDACK+D ELR +LGDSIGNPELMRKRVEERVRKKGR+F KSKTGSVLAFKVSFRDFN
Sbjct: 121 VLEDACKDDEELRAVLGDSIGNPELMRKRVEERVRKKGRNFNKSKTGSVLAFKVSFRDFN 180

Query: 161 PLDSYIWVELFGSPSDRDVDLFGSVIQSWYVMGRLGAFNSSNLQVISFS 206
           PLDSYIW EL+GSPSDRDVDL GSVIQSWYVMGRLGAFNSSNLQ+ + S
Sbjct: 181 PLDSYIWFELYGSPSDRDVDLIGSVIQSWYVMGRLGAFNSSNLQLANSS 229

[Close]

BLAST of Spo20027.1 vs. NCBI nr
Match: gi|225463813|ref|XP_002271050.1| (PREDICTED: uncharacterized protein LOC100262808 [Vitis vinifera])

HSP 1 Score: 257.7 bits (657), Expect = 1.800e-65
Identity = 136/193 (70.47%), Postives = 157/193 (81.35%), Query Frame = 1

		  
Query: 16  PSLSPKFPWKNSSLLFCNSTNNFTAI--RASSSSIDSLDEDGKNGVT-AKASGTSARGRR 75
           P   P FP  N ++   N  N    +   +SSS   SL ++ + GV   K SGT+ARGRR
Sbjct: 15  PLSPPLFPNLNDTI---NGKNKHPMVLTMSSSSIAGSLSDENEAGVPKGKGSGTTARGRR 74

Query: 76  LLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPELMRKRVEERVRK 135
           LLKLREEK +RE++RLHNYP+WAKV+EDACK+D ELR +LGDSIGNPELMRKRVEERVRK
Sbjct: 75  LLKLREEKRKREYDRLHNYPAWAKVMEDACKDDSELRAVLGDSIGNPELMRKRVEERVRK 134

Query: 136 KGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGSVIQSWYVMGRLG 195
           KGRDF+KSKTGSVLA+KVSFRDFNP+DSYIW EL+GSPSDRDVDL GSVIQSWYVMGRLG
Sbjct: 135 KGRDFRKSKTGSVLAYKVSFRDFNPVDSYIWFELYGSPSDRDVDLIGSVIQSWYVMGRLG 194

Query: 196 AFNSSNLQVISFS 206
           AFNSSNLQ+ + S
Sbjct: 195 AFNSSNLQLANSS 204

[Close]

BLAST of Spo20027.1 vs. NCBI nr
Match: gi|297742705|emb|CBI35339.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 257.7 bits (657), Expect = 1.800e-65
Identity = 136/193 (70.47%), Postives = 157/193 (81.35%), Query Frame = 1

		  
Query: 16  PSLSPKFPWKNSSLLFCNSTNNFTAI--RASSSSIDSLDEDGKNGVT-AKASGTSARGRR 75
           P   P FP  N ++   N  N    +   +SSS   SL ++ + GV   K SGT+ARGRR
Sbjct: 46  PLSPPLFPNLNDTI---NGKNKHPMVLTMSSSSIAGSLSDENEAGVPKGKGSGTTARGRR 105

Query: 76  LLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPELMRKRVEERVRK 135
           LLKLREEK +RE++RLHNYP+WAKV+EDACK+D ELR +LGDSIGNPELMRKRVEERVRK
Sbjct: 106 LLKLREEKRKREYDRLHNYPAWAKVMEDACKDDSELRAVLGDSIGNPELMRKRVEERVRK 165

Query: 136 KGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGSVIQSWYVMGRLG 195
           KGRDF+KSKTGSVLA+KVSFRDFNP+DSYIW EL+GSPSDRDVDL GSVIQSWYVMGRLG
Sbjct: 166 KGRDFRKSKTGSVLAYKVSFRDFNPVDSYIWFELYGSPSDRDVDLIGSVIQSWYVMGRLG 225

Query: 196 AFNSSNLQVISFS 206
           AFNSSNLQ+ + S
Sbjct: 226 AFNSSNLQLANSS 235

[Close]

BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RD48_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079650 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 5.500e-109
Identity = 201/205 (98.05%), Postives = 203/205 (99.02%), Query Frame = 1

		  
Query: 1   MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVT 60
           MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVT
Sbjct: 1   MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFCNSTNNFTAIRASSSSIDSLDEDGKNGVT 60

Query: 61  AKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPE 120
           AKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPE
Sbjct: 61  AKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPE 120

Query: 121 LMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGS 180
           LMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGS
Sbjct: 121 LMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGS 180

Query: 181 VIQSWYVMGRLGAFNSSNLQVISFS 206
           VIQSWYVMGRLGAFNSSNLQ+ + S
Sbjct: 181 VIQSWYVMGRLGAFNSSNLQLTNSS 205

[Close]

BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E320_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g126560 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 1.500e-74
Identity = 166/225 (73.78%), Postives = 177/225 (78.67%), Query Frame = 1

		  
Query: 1   MQTLGRSCSCSCFRTPSLSPKFPWKNSSLLFC------------NSTNNFTAIRASSS-S 60
           MQTL     CS F  P +   FP  + SL  C            NS NN TAIRASSS S
Sbjct: 1   MQTL---LGCSYFH-PQI---FPLPSFSLNHCSNHGKTYLQWKTNSYNNLTAIRASSSTS 60

Query: 61  IDSLDED--GKNG-----VTAKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLED 120
           IDSL+E+  G  G     V AK SGTSARGRRLLKLREEKHRRE +RLH+YPSWAKVLED
Sbjct: 61  IDSLEEEDHGNRGERVTDVAAKGSGTSARGRRLLKLREEKHRREQQRLHDYPSWAKVLED 120

Query: 121 ACKNDLELRTLLGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDS 180
           ACKNDLELR +LGDSIGNPELMRK+VEERVRKKGRD QKSKTGSVLAFKVSFRDFNPLDS
Sbjct: 121 ACKNDLELRAVLGDSIGNPELMRKKVEERVRKKGRDLQKSKTGSVLAFKVSFRDFNPLDS 180

Query: 181 YIWVELFGSPSDRDVDLFGSVIQSWYVMGRLGAFNSSNLQVISFS 206
           YIWVELFGSPSDRDVDLFGSVIQ+WYVMGRLGAFNSSNLQ+ + S
Sbjct: 181 YIWVELFGSPSDRDVDLFGSVIQAWYVMGRLGAFNSSNLQLANSS 218

[Close]

BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
Match: V4UC78_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10015943mg PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.400e-66
Identity = 134/169 (79.29%), Postives = 145/169 (85.80%), Query Frame = 1

		  
Query: 41  IRASSSSIDSLDEDGKNG----VTAKASGTSARGRRLLKLREEKHRREHERLHNYPSWAK 100
           I A++S        G+N     V AK SGTSARGRRLLK+REEK RREH+RLHNYPSWAK
Sbjct: 61  IHAAASEDGGRSSSGRNERNEVVGAKGSGTSARGRRLLKVREEKRRREHDRLHNYPSWAK 120

Query: 101 VLEDACKNDLELRTLLGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFN 160
           VLEDACK+D ELR +LGDSIGNPELMRKRVEERVRKKGR+F KSKTGSVLAFKVSFRDFN
Sbjct: 121 VLEDACKDDEELRAVLGDSIGNPELMRKRVEERVRKKGRNFNKSKTGSVLAFKVSFRDFN 180

Query: 161 PLDSYIWVELFGSPSDRDVDLFGSVIQSWYVMGRLGAFNSSNLQVISFS 206
           PLDSYIW EL+GSPSDRDVDL GSVIQSWYVMGRLGAFNSSNLQ+ + S
Sbjct: 181 PLDSYIWFELYGSPSDRDVDLIGSVIQSWYVMGRLGAFNSSNLQLANSS 229

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BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
Match: F6HVX8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0071g01140 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.300e-65
Identity = 136/193 (70.47%), Postives = 157/193 (81.35%), Query Frame = 1

		  
Query: 16  PSLSPKFPWKNSSLLFCNSTNNFTAI--RASSSSIDSLDEDGKNGVT-AKASGTSARGRR 75
           P   P FP  N ++   N  N    +   +SSS   SL ++ + GV   K SGT+ARGRR
Sbjct: 15  PLSPPLFPNLNDTI---NGKNKHPMVLTMSSSSIAGSLSDENEAGVPKGKGSGTTARGRR 74

Query: 76  LLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTLLGDSIGNPELMRKRVEERVRK 135
           LLKLREEK +RE++RLHNYP+WAKV+EDACK+D ELR +LGDSIGNPELMRKRVEERVRK
Sbjct: 75  LLKLREEKRKREYDRLHNYPAWAKVMEDACKDDSELRAVLGDSIGNPELMRKRVEERVRK 134

Query: 136 KGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDVDLFGSVIQSWYVMGRLG 195
           KGRDF+KSKTGSVLA+KVSFRDFNP+DSYIW EL+GSPSDRDVDL GSVIQSWYVMGRLG
Sbjct: 135 KGRDFRKSKTGSVLAYKVSFRDFNPVDSYIWFELYGSPSDRDVDLIGSVIQSWYVMGRLG 194

Query: 196 AFNSSNLQVISFS 206
           AFNSSNLQ+ + S
Sbjct: 195 AFNSSNLQLANSS 204

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BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
Match: W9SFB2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011024 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.700e-65
Identity = 124/154 (80.52%), Postives = 142/154 (92.21%), Query Frame = 1

		  
Query: 52  DEDGKNGVTAKASGTSARGRRLLKLREEKHRREHERLHNYPSWAKVLEDACKNDLELRTL 111
           D+DG+    AK SGT+ARGRRLLKLREEK +RE++RLHNYP+WAKVLEDACK+D ELR +
Sbjct: 56  DDDGERSAMAKGSGTTARGRRLLKLREEKRKREYDRLHNYPTWAKVLEDACKDDDELRAV 115

Query: 112 LGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPS 171
           LGDSIGNPELMRK+VEERVRKKGRDF+KSKTGSVL+FKVSFRDFNP+DSYIW EL+GSPS
Sbjct: 116 LGDSIGNPELMRKKVEERVRKKGRDFRKSKTGSVLSFKVSFRDFNPVDSYIWFELYGSPS 175

Query: 172 DRDVDLFGSVIQSWYVMGRLGAFNSSNLQVISFS 206
           DRDVDL GSVIQSWYVMGRLG+FNS+NLQ+ + S
Sbjct: 176 DRDVDLIGSVIQSWYVMGRLGSFNSTNLQLANSS 209

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BLAST of Spo20027.1 vs. TAIR (Arabidopsis)
Match: AT5G08400.1 (Protein of unknown function (DUF3531))

HSP 1 Score: 227.3 bits (578), Expect = 9.400e-60
Identity = 121/210 (57.62%), Postives = 150/210 (71.43%), Query Frame = 1

		  
Query: 31  FCNSTNNFTAIRASSSSIDSLDEDGKNGVTA--KASGTSARGRRLLKLREEKHRREHERL 90
           F +   N   + A S++ D+L  +   G++A  K SGT+ARGRRLLK+REEK +R+++RL
Sbjct: 31  FSSHKRNLHTLVAVSANSDNLAGEDNGGISAANKGSGTTARGRRLLKVREEKRKRDYDRL 90

Query: 91  HNYPSWAK---------------------------------VLEDACKNDLELRTLLGDS 150
           H+YPSWAK                                 VLE ACK+D ELR +LGDS
Sbjct: 91  HDYPSWAKYLFLSFSFALQVFVFLPKSRESVNLFLVNDKCRVLESACKDDEELRAVLGDS 150

Query: 151 IGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWVELFGSPSDRDV 206
           IGNPELMRK+VEERVRKKG+DFQK KTGSVL+FKV+FRDFNP+DS+IW EL+G+PSDRDV
Sbjct: 151 IGNPELMRKKVEERVRKKGKDFQKQKTGSVLSFKVNFRDFNPVDSFIWFELYGTPSDRDV 210

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BLAST of Spo20027.1 vs. TAIR (Arabidopsis)
Match: AT4G29400.1 (Protein of unknown function (DUF3531))

HSP 1 Score: 94.4 bits (233), Expect = 9.500e-20
Identity = 40/97 (41.24%), Postives = 64/97 (65.98%), Query Frame = 1

		  
Query: 105 DLELRTLLGDSIGNPELMRKRVEERVRKKGRDFQKSKTGSVLAFKVSFRDFNPLDSYIWV 164
           D E   +LGD + NP+  +K++EER+RKK      +KTGS  +  V+F  F   +SY+W+
Sbjct: 109 DPEFADILGDCLDNPDKAQKKMEERLRKKRNKILHTKTGSATSMPVTFNKFEYSNSYMWL 168

Query: 165 ELFGSPSDRDVDLFGSVIQSWYVMGRLGAFNSSNLQV 202
           E + +P D+D+ L    I+SW+++GRLG +NS N+Q+
Sbjct: 169 EFYNTPLDKDIALISDTIRSWHILGRLGGYNSMNMQL 205

The following BLAST results are available for this feature:

BLAST of Spo20027.1 vs. NCBI nr
BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
BLAST of Spo20027.1 vs. ExPASy Swiss-Prot
BLAST of Spo20027.1 vs. TAIR (Arabidopsis)

BLAST of Spo20027.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902214021\|gb\|KNA17395.1\|	7.9e-109	98.0	hypothetical protein SOVF_0796...	[more]
gi\|731367577\|ref\|XP_010695685.1\|	2.2e-74	73.7	PREDICTED: uncharacterized pro...	[more]
gi\|567912383\|ref\|XP_006448505.1\|	4.9e-66	79.2	hypothetical protein CICLE_v10...	[more]
gi\|225463813\|ref\|XP_002271050.1\|	1.8e-65	70.4	PREDICTED: uncharacterized pro...	[more]
gi\|297742705\|emb\|CBI35339.3\|	1.8e-65	70.4	unnamed protein product [Vitis...	[more]

BLAST of Spo20027.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RD48_SPIOL	5.5e-109	98.0	Uncharacterized protein OS=Spi...	[more]
A0A0J8E320_BETVU	1.5e-74	73.7	Uncharacterized protein OS=Bet...	[more]
V4UC78_9ROSI	3.4e-66	79.2	Uncharacterized protein OS=Cit...	[more]
F6HVX8_VITVI	1.3e-65	70.4	Putative uncharacterized prote...	[more]
W9SFB2_9ROSA	1.7e-65	80.5	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo20027.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

BLAST of Spo20027.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
AT5G08400.1	9.4e-60	57.6	Protein of unknown function (D...	[more]
AT4G29400.1	9.5e-20	41.2	Protein of unknown function (D...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021920	Protein of unknown function DUF3531	PFAM	PF12049	DUF3531	coord: 149..207 score: 6.1
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 18..203 score: 7.6
None	No IPR available	PANTHER	PTHR33102:SF13	DVL17	coord: 18..203 score: 7.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly