Spo20156.1 (mRNA) | SpinachBase

Overview


Name	Spo20156.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	G-strand specific single-stranded telomere-binding protein 2
Location	SpoScf_07063 : 3041 .. 3971 (-)
Sequence length	661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTACAAAGCGATCTCGAGGATTTGGTTTCGTTGTGTTTGACAATGAAAAAGTTGTAGATGATATTCTGGCTGATGGAAACATGATCGAATTGGATGGTTCAAGGGTGAGTTTAGCTATCTGGCTCTTTCTTAGGACTGTGTATCCTATGTCACCTCTGTTTAGATCAATTAAACAATGGTGTAATATACCTTATTCTTATAAAATTTCTGTGTCTTTTGTCATCTGTTGTCGGGTTTCCAATTTGGTAGTACTTAAGTCGATCTTTTGGCTGTATCTCAGTATGACCTTTGAAATTATTGATGGGGTTATTTTCTTTTCTAGCCAGGATCTCAGGTATTAACGACTGTAGGTTTTACTCAATTGTTTGTTGTAGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCTTCCTCAGGTTCTGCATTTGGTAGTAACTCTAGGGTACGCACACATGGAGGTAATATGAGGGGGTACCCTGATACTTATAGTGGATTTGGAAGTGGTTATAGTCCTGCCTCCTCCTATAGGGCATTTGGAGCCTACCCTTCTAGGATGGGTGATTATGGAGGCTATGTAGGTGGTGATTATGGAGAAGGTTATGGTGGATTTGGTGGGGCTTCCAGTATGGCTGGGTATCGAGGAGAATCTTCTTATGGCTATTCTGGCCGTTATGGCTCATATGGTGGGGCTTTAGGTGGAGGATATGGTAGTGGCCTAGGGATGTTTGGCAGAGGTGATAGCTATGGTGGCGGTTCTGGTTCAGGGGCAGGTTCAGGGTCAGGGTCAGGGTCAGGTTCAGGTGCTGGCTATGACTCAGCTCCTGGCTATGGCTCAGGTCCTAGTGGATATGGAGCCGGAGCGATGTATGGAGGTAGGGAAGGCTATAGCAGCAGTAGTCGTTACCACCCCTATGCACGATAG

mRNA sequence

TGCTACAAAGCGATCTCGAGGATTTGGTTTCGTTGTGTTTGACAATGAAAAAGTTGTAGATGATATTCTGGCTGATGGAAACATGATCGAATTGGATGGTTCAAGGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCTTCCTCAGGTTCTGCATTTGGTAGTAACTCTAGGGTACGCACACATGGAGGTAATATGAGGGGGTACCCTGATACTTATAGTGGATTTGGAAGTGGTTATAGTCCTGCCTCCTCCTATAGGGCATTTGGAGCCTACCCTTCTAGGATGGGTGATTATGGAGGCTATGTAGGTGGTGATTATGGAGAAGGTTATGGTGGATTTGGTGGGGCTTCCAGTATGGCTGGGTATCGAGGAGAATCTTCTTATGGCTATTCTGGCCGTTATGGCTCATATGGTGGGGCTTTAGGTGGAGGATATGGTAGTGGCCTAGGGATGTTTGGCAGAGGTGATAGCTATGGTGGCGGTTCTGGTTCAGGGGCAGGTTCAGGGTCAGGGTCAGGGTCAGGTTCAGGTGCTGGCTATGACTCAGCTCCTGGCTATGGCTCAGGTCCTAGTGGATATGGAGCCGGAGCGATGTATGGAGGTAGGGAAGGCTATAGCAGCAGTAGTCGTTACCACCCCTATGCACGATAG

Coding sequence (CDS)

ATGATCGAATTGGATGGTTCAAGGGTTGAGATCAAGAAGGCTGAACCAAAGAAAGCCTCAAACCCTTCCTCAGGTTCTGCATTTGGTAGTAACTCTAGGGTACGCACACATGGAGGTAATATGAGGGGGTACCCTGATACTTATAGTGGATTTGGAAGTGGTTATAGTCCTGCCTCCTCCTATAGGGCATTTGGAGCCTACCCTTCTAGGATGGGTGATTATGGAGGCTATGTAGGTGGTGATTATGGAGAAGGTTATGGTGGATTTGGTGGGGCTTCCAGTATGGCTGGGTATCGAGGAGAATCTTCTTATGGCTATTCTGGCCGTTATGGCTCATATGGTGGGGCTTTAGGTGGAGGATATGGTAGTGGCCTAGGGATGTTTGGCAGAGGTGATAGCTATGGTGGCGGTTCTGGTTCAGGGGCAGGTTCAGGGTCAGGGTCAGGGTCAGGTTCAGGTGCTGGCTATGACTCAGCTCCTGGCTATGGCTCAGGTCCTAGTGGATATGGAGCCGGAGCGATGTATGGAGGTAGGGAAGGCTATAGCAGCAGTAGTCGTTACCACCCCTATGCACGATAG

Protein sequence

MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASSYRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGGYGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREGYSSSSRYHPYAR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20156	Spo20156	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20156.1	Spo20156.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20156.1.utr5p.1	Spo20156.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20156.1.CDS.2	Spo20156.1.CDS.2	CDS
Spo20156.1.CDS.1	Spo20156.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20156.1.exon.2	Spo20156.1.exon.2	exon
Spo20156.1.exon.1	Spo20156.1.exon.1	exon

Homology

[Close]

BLAST of Spo20156.1 vs. NCBI nr
Match: gi|902240162|gb|KNA25903.1| (hypothetical protein SOVF_002430 [Spinacia oleracea])

HSP 1 Score: 344.0 bits (881), Expect = 1.700e-91
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS
Sbjct: 168 MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 227

Query: 61  YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 120
           YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG
Sbjct: 228 YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 287

Query: 121 YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREG 180
           YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREG
Sbjct: 288 YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREG 347

Query: 181 YSSSSRYHPYAR 193
           YSSSSRYHPYAR
Sbjct: 348 YSSSSRYHPYAR 359

[Close]

BLAST of Spo20156.1 vs. NCBI nr
Match: gi|731355572|ref|XP_010689212.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.8 bits (608), Expect = 7.800e-60
Identity = 145/193 (75.13%), Postives = 157/193 (81.35%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MIE++GSRVEIKKAEPKKAS  +SGSAFGS+SR R +G + RGYPDTYSGFGSGYSPAS 
Sbjct: 168 MIEMNGSRVEIKKAEPKKAS--ASGSAFGSDSRGRGYGDDFRGYPDTYSGFGSGYSPAS- 227

Query: 61  YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 120
           YRA+GA+PSR GDYGGY G DYG GYGGFGGA+S+AGYRGESSYGYSGRYGSYGG LGGG
Sbjct: 228 YRAYGAFPSRFGDYGGYGGSDYGGGYGGFGGAASVAGYRGESSYGYSGRYGSYGGGLGGG 287

Query: 121 YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGY-GAGAMYGGRE 180
           YGSGLGM+GRGD YGGGSGSGA                  GYGSGP  Y GAGAMYG R 
Sbjct: 288 YGSGLGMYGRGDGYGGGSGSGA------------------GYGSGPGAYGGAGAMYGSRG 339

Query: 181 GYSSSSRYHPYAR 193
           GYSS+SRYHPYAR
Sbjct: 348 GYSSNSRYHPYAR 339

[Close]

BLAST of Spo20156.1 vs. NCBI nr
Match: gi|1009127790|ref|XP_015880881.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Ziziphus jujuba])

HSP 1 Score: 160.6 bits (405), Expect = 2.700e-36
Identity = 112/194 (57.73%), Postives = 133/194 (68.56%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           M+++ GS+VEIKKAEPKKASNP+   A+GS+SRVR +  +  GY D+YSGFGSG    + 
Sbjct: 170 MVDMAGSQVEIKKAEPKKASNPAPVPAYGSDSRVRPYNDSFGGYGDSYSGFGSGAFGPAP 229

Query: 61  YRAFGAYPSRMGDYGGYVG-GDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGG 120
           YR+ G + SR+ DYG Y    D+G G+GGFG     +GYRGESS+GYS R+GSYGG LGG
Sbjct: 230 YRSLGGFGSRL-DYGVYGNDNDFGGGFGGFGSGGGFSGYRGESSFGYSSRFGSYGGGLGG 289

Query: 121 GYG-SGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGR 180
           GYG SGLG +GRG           G GS  GSGSG  YDS PG    PS YG  +MYGGR
Sbjct: 290 GYGGSGLGTYGRGSG---------GYGSYVGSGSGGDYDSGPG----PS-YGGPSMYGGR 348

Query: 181 EGYSSSSRYHPYAR 193
            GY  SSRYHPYAR
Sbjct: 350 TGYGGSSRYHPYAR 348

[Close]

BLAST of Spo20156.1 vs. NCBI nr
Match: gi|661881933|emb|CDP14410.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 154.8 bits (390), Expect = 1.500e-34
Identity = 109/193 (56.48%), Postives = 125/193 (64.77%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MI++ G++VEIKKAEPKK SNP+  SA+GS SR R +G N  G+ ++YS F SG    + 
Sbjct: 166 MIDMAGTQVEIKKAEPKKPSNPAPASAYGSESRGRPYGDNFGGFGNSYSSFSSGGFGPAP 225

Query: 61  YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 120
           YR+FG    R GDYGGY GG     YG FGG S   GYRGE S GYS RYGSY G  GGG
Sbjct: 226 YRSFGGIGGRYGDYGGYNGGGEFGRYGDFGG-SDYVGYRGEPSLGYSSRYGSYAGGFGGG 285

Query: 121 Y-GSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGRE 180
           Y GSGLG +GRG  YGG SG+GA          GAGYDS PG G G    G+G +YG R 
Sbjct: 286 YSGSGLGAYGRGGGYGGYSGAGA----------GAGYDSGPGAGYG----GSGGLYGSRA 343

Query: 181 GYSSSSRYHPYAR 193
           GYS   RYHPYAR
Sbjct: 346 GYSGGGRYHPYAR 343

[Close]

BLAST of Spo20156.1 vs. NCBI nr
Match: gi|747084142|ref|XP_011089468.1| (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Sesamum indicum])

HSP 1 Score: 153.3 bits (386), Expect = 4.300e-34
Identity = 107/194 (55.15%), Postives = 129/194 (66.49%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MI++ G++VEIKKAEPKK SNP+   A+GS+SR R +G +  G+  +YS FGSG    +S
Sbjct: 166 MIDMAGTQVEIKKAEPKKPSNPTPAPAYGSDSRARAYGDSYGGFGSSYSSFGSGGFGPAS 225

Query: 61  YRAFGA-YPSRMGDYGGYVGG-DYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALG 120
           YR+ G+    R GDYGGY GG ++G  YG +  ASS  GYRG+   GYS R+GSYGG  G
Sbjct: 226 YRSMGSGLGGRFGDYGGYGGGSEFGGRYGDY--ASSEFGYRGDGPLGYSSRFGSYGGGFG 285

Query: 121 GGYGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGR 180
           GGYG GLG +GRG  Y          GS  G+GSGAGYDS P  G G +G   G MYGGR
Sbjct: 286 GGYGGGLGAYGRGGGY----------GSYGGAGSGAGYDSGPSAGYGGAG---GGMYGGR 344

Query: 181 EGYSSSSRYHPYAR 193
            GYS SSRYHPYAR
Sbjct: 346 AGYSGSSRYHPYAR 344

[Close]

BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2H0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002430 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.200e-91
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS
Sbjct: 168 MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 227

Query: 61  YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 120
           YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG
Sbjct: 228 YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 287

Query: 121 YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREG 180
           YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREG
Sbjct: 288 YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGREG 347

Query: 181 YSSSSRYHPYAR 193
           YSSSSRYHPYAR
Sbjct: 348 YSSSSRYHPYAR 359

[Close]

BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BM46_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g206040 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 5.400e-60
Identity = 145/193 (75.13%), Postives = 157/193 (81.35%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MIE++GSRVEIKKAEPKKAS  +SGSAFGS+SR R +G + RGYPDTYSGFGSGYSPAS 
Sbjct: 168 MIEMNGSRVEIKKAEPKKAS--ASGSAFGSDSRGRGYGDDFRGYPDTYSGFGSGYSPAS- 227

Query: 61  YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 120
           YRA+GA+PSR GDYGGY G DYG GYGGFGGA+S+AGYRGESSYGYSGRYGSYGG LGGG
Sbjct: 228 YRAYGAFPSRFGDYGGYGGSDYGGGYGGFGGAASVAGYRGESSYGYSGRYGSYGGGLGGG 287

Query: 121 YGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGY-GAGAMYGGRE 180
           YGSGLGM+GRGD YGGGSGSGA                  GYGSGP  Y GAGAMYG R 
Sbjct: 288 YGSGLGMYGRGDGYGGGSGSGA------------------GYGSGPGAYGGAGAMYGSRG 339

Query: 181 GYSSSSRYHPYAR 193
           GYSS+SRYHPYAR
Sbjct: 348 GYSSNSRYHPYAR 339

[Close]

BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
Match: A0A068V0U2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040811001 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.000e-34
Identity = 109/193 (56.48%), Postives = 125/193 (64.77%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYSPASS 60
           MI++ G++VEIKKAEPKK SNP+  SA+GS SR R +G N  G+ ++YS F SG    + 
Sbjct: 166 MIDMAGTQVEIKKAEPKKPSNPAPASAYGSESRGRPYGDNFGGFGNSYSSFSSGGFGPAP 225

Query: 61  YRAFGAYPSRMGDYGGYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGGALGGG 120
           YR+FG    R GDYGGY GG     YG FGG S   GYRGE S GYS RYGSY G  GGG
Sbjct: 226 YRSFGGIGGRYGDYGGYNGGGEFGRYGDFGG-SDYVGYRGEPSLGYSSRYGSYAGGFGGG 285

Query: 121 Y-GSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYGGRE 180
           Y GSGLG +GRG  YGG SG+GA          GAGYDS PG G G    G+G +YG R 
Sbjct: 286 YSGSGLGAYGRGGGYGGYSGAGA----------GAGYDSGPGAGYG----GSGGLYGSRA 343

Query: 181 GYSSSSRYHPYAR 193
           GYS   RYHPYAR
Sbjct: 346 GYSGGGRYHPYAR 343

[Close]

BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
Match: A0A061DMA1_THECC (RNA-binding family protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_002445 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.500e-33
Identity = 110/196 (56.12%), Postives = 130/196 (66.33%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYS-PAS 60
           MI+++G++VEIKKAEPKKASNP+ G A+GS SR R++     G+ D Y GFGSG    A+
Sbjct: 50  MIDMEGTQVEIKKAEPKKASNPAPGPAYGSESRARSYNDGYGGFGD-YGGFGSGGGFGAA 109

Query: 61  SYRAFGAYPSRMGDYGGYVGG--DYGEGYGGF-GGASSMAGYRGESSYGYSGRYGSYGGA 120
            YR+FG + SR GDYGGY GG  D+G  Y GF GGA + +GYRGESS+GYS R+GSY G 
Sbjct: 110 PYRSFGGFGSRFGDYGGYGGGGADFGGSYAGFGGGAGAFSGYRGESSFGYSSRFGSYAGG 169

Query: 121 LGGGYGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYG 180
           L    GSGLG +GRG         G G GS  GSGS   YDS PG G G    G G +YG
Sbjct: 170 LS---GSGLGAYGRG---------GGGYGSYGGSGSSGSYDSGPGAGFG----GPGGIYG 228

Query: 181 GREGYSSSSRYHPYAR 193
            R GY  SSRYHPYAR
Sbjct: 230 SRTGYGGSSRYHPYAR 228

[Close]

BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
Match: A0A061DU90_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_002445 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.500e-33
Identity = 110/196 (56.12%), Postives = 130/196 (66.33%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYS-PAS 60
           MI+++G++VEIKKAEPKKASNP+ G A+GS SR R++     G+ D Y GFGSG    A+
Sbjct: 166 MIDMEGTQVEIKKAEPKKASNPAPGPAYGSESRARSYNDGYGGFGD-YGGFGSGGGFGAA 225

Query: 61  SYRAFGAYPSRMGDYGGYVGG--DYGEGYGGF-GGASSMAGYRGESSYGYSGRYGSYGGA 120
            YR+FG + SR GDYGGY GG  D+G  Y GF GGA + +GYRGESS+GYS R+GSY G 
Sbjct: 226 PYRSFGGFGSRFGDYGGYGGGGADFGGSYAGFGGGAGAFSGYRGESSFGYSSRFGSYAGG 285

Query: 121 LGGGYGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAMYG 180
           L    GSGLG +GRG         G G GS  GSGS   YDS PG G G    G G +YG
Sbjct: 286 LS---GSGLGAYGRG---------GGGYGSYGGSGSSGSYDSGPGAGFG----GPGGIYG 344

Query: 181 GREGYSSSSRYHPYAR 193
            R GY  SSRYHPYAR
Sbjct: 346 SRTGYGGSSRYHPYAR 344

[Close]

BLAST of Spo20156.1 vs. TAIR (Arabidopsis)
Match: AT3G13224.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 82.0 bits (201), Expect = 4.300e-16
Identity = 92/198 (46.46%), Postives = 108/198 (54.55%), Query Frame = 1


		  
Query: 1   MIELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGYS-PAS 60
           MI++  ++VEIKKAEPKK+ N S  S +GS+ R R+   +   Y   Y GF  GY  P  
Sbjct: 172 MIDMADTQVEIKKAEPKKSLNRSPPS-YGSHPRGRSSNDSYASYGGPYGGFDGGYGHPPG 231

Query: 61  SYRAFGAYPSRM-GDYG---GYVGGDYGEGYGGFGGASSMAGYRGESSYGYSGRYGSYGG 120
             R+ G   SR  G YG   G VG ++G GY  +GG S + GYR E   GYS R+G YG 
Sbjct: 232 PIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGS-LGGYRNEPPLGYSSRFGPYGS 291

Query: 121 ALGG-GYGSGLGMFGRGDSYGGGSGSGAGSGSGSGSGSGAGYDSAPGYGSGPSGYGAGAM 180
             GG GYG G    G G   G   G G G G   G G G  Y+S    G G S  GAG  
Sbjct: 292 GFGGEGYGRG----GEGAYLGYPRGGGEGYGGYGGPGYGGAYESG---GPGGSYEGAGGP 351

Query: 181 YGGREGYSSSSRYHPYAR 193
           YG   GYSSSSRYHPYAR
Sbjct: 352 YG--RGYSSSSRYHPYAR 358

[Close]

BLAST of Spo20156.1 vs. TAIR (Arabidopsis)
Match: AT5G40490.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 47.8 bits (112), Expect = 9.000e-6
Identity = 92/249 (36.95%), Postives = 106/249 (42.57%), Query Frame = 1


		  
Query: 2   IELDGSRVEIKKAEPKKASNPSSGSAFGSNSRVRTHGGNMRGYPDTYSGFGSGY-SPASS 61
           IEL G++VEIKKAEPKK ++ ++ S    +SR    GG   GY     G G GY  P   
Sbjct: 194 IELSGTQVEIKKAEPKKPNSVTTPSKRFGDSRSNFGGGYGDGYG---GGHGGGYGGPGGP 253

Query: 62  YRAFGAYPSRMGDYGGYVGGDYGEG--YGGFGGASSMAG---YRGESSYGYSGRYGSYGG 121
           Y++ G Y       GG  GG  G G  +GG+GG     G   YRGE + GYSGRYG  GG
Sbjct: 254 YKSGGGYG------GGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYG--GG 313

Query: 122 ALGGGYGSGLGMFGRGDSYGGGSGSGAGSG---SGSGSGSGAGYDSAPG----------- 181
             GGGY  G      G S GGG G G G G    GS    G GY    G           
Sbjct: 314 --GGGYNRG------GYSMGGGGGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGI 373

Query: 182 ---------------------------------YGSGPSGYGAGAMY---GGREGY--SS 193
                                            YG+G  G G G+ Y   GGR GY    
Sbjct: 374 GGYGGGMGGAGGGGYRGGGGYDMGGVGGGGAGGYGAGGGGNGGGSFYGGGGGRGGYGGGG 423

The following BLAST results are available for this feature:

BLAST of Spo20156.1 vs. NCBI nr
BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
BLAST of Spo20156.1 vs. ExPASy Swiss-Prot
BLAST of Spo20156.1 vs. TAIR (Arabidopsis)

BLAST of Spo20156.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902240162\|gb\|KNA25903.1\|	1.7e-91	100.	hypothetical protein SOVF_0024...	[more]
gi\|731355572\|ref\|XP_010689212.1\|	7.8e-60	75.1	PREDICTED: heterogeneous nucle...	[more]
gi\|1009127790\|ref\|XP_015880881.1\|	2.7e-36	57.7	PREDICTED: heterogeneous nucle...	[more]
gi\|661881933\|emb\|CDP14410.1\|	1.5e-34	56.4	unnamed protein product [Coffe...	[more]
gi\|747084142\|ref\|XP_011089468.1\|	4.3e-34	55.1	PREDICTED: heterogeneous nucle...	[more]

BLAST of Spo20156.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2H0_SPIOL	1.2e-91	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BM46_BETVU	5.4e-60	75.1	Uncharacterized protein OS=Bet...	[more]
A0A068V0U2_COFCA	1.0e-34	56.4	Uncharacterized protein OS=Cof...	[more]
A0A061DMA1_THECC	1.5e-33	56.1	RNA-binding family protein iso...	[more]
A0A061DU90_THECC	1.5e-33	56.1	RNA-binding family protein iso...	[more]

BLAST of Spo20156.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo20156.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G13224.2	4.3e-16	46.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G40490.1	9.0e-6	36.9	RNA-binding (RRM/RBD/RNP motif...	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0044424	intracellular part
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding