Spo20235.1 (mRNA) | SpinachBase

Overview


Name	Spo20235.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Zinc finger CCCH domain-containing protein 14
Location	SpoScf_00073 : 580317 .. 585043 (-)
Sequence length	1720

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAAAAATCCTTGTTTTCTAAAAATAACCTCCAGCGCTCAAAATTTTCTCTCTCTTTCTTCGAGGCGTCTCTTCCTCAAGCTACGTTTTCTCTCTCTTCCCCAACCTCTAAACCCTAGTTTCTGCTAGGGTTTCTACCTTACTCAAATTTTCTCATTTTCTTCATTTTTTCTAGGGTTCGTGAAATTTATTCTTCAATTTTGCAGTTTTAGTTTATTTTTGTTGTTTAAAGCTCGATTTAGCTCGAATCTCCAACTTCAATGGACGGCCGAAAGAGAGGAAGGCATGATGCTGGCAGTGCACACTCTAATGGGGGATTCAAGAAGCACAAACAAGGTTTGTTCTTCATTTTACTCCTTTCTTTTTCTTTACTCAATAATTTCTAGGCTTGGATCTGAACTAAGAAGCAAGAATTAATTTTGGCTGGAGTACATATTCTGAAAATTTCTTCTGTGTTGTTCTGTAGCAAACCTTTTGGTTATTAATAGGAAGTGACATGAATTGAGTAGATTTTTAATTCGTTACAGTATTACTTTCATTTGAGTACTACAAGAATAACAAGATTGCAAATTTTTCCGATTTGGGACAGAAAAGTCACCGAAACGCATTTTTGTAATATTAATTGTCTTTCTATATAGAAAATATTATACGGAGTAACTGGGTTTACGTAACTGACGTCACTATTTTATTTGAACCAAATTTGGGAGGTAAGACCAGTACGCTTTAGTAGGTCACATTTTAATTTTTGGGGGCGTCTCAAAATAATGGCCACCCGACAGGGATAATGTTTTGCTGATTTCAGCTCTTGGAAACAATGTTATTAATTACAATGAACTAATTTTAGTACGGTATTTTAGGATGTGTACTGGAAGTTTNGGAAGTTGGGGGGGGGGGGGGTTTGTGATTCTGTTAAGTTACCTATTTAGAATAATTTGGGGTTGTTTACATGTTTGATGATTTATATGCAAGCACTAAGCATTGATTGCAATTGTTTATTTTCTGTGCATCTGCCTCTCTTACCATGGATTTAGCATGGATATCCATTTTAGTTGAGCAACATGAAAGAAGTAGGCAAAAGGCAACCCAATTTACCGAGAATGGGATGAAATCTCATTTAAAAGACTCTGCTGGGATTTAAGTTATGAAGAGCTAACACTTGCGCATGGAGAATCAAGTTACATAAGTAATGTTAAATTATTAACAGACTCACATGAATTAGATATTTCTATATTGATATATGCATTAAAATTGTCTATCATTAGTAGTGTATTTTTAGTTACATGTAAGTCACTACAGTAGTGTTTGGTTATTTTGAACTTATTCAAAGCAACGGTGGCAAGGAAAACTCATAAAAGATAATTAATGTTTTGTAACAGAAACGGATGGTATAGGAAGCAAATCAAAGCCTTGCACCAAGTTCTTCAGGTTCAAATCTTTACCCATCTAATAAATATTGACATTGTAGTGTATCTTATCTCAAATGCTTTAGGTCATAACTTGTCCAATCGAATGAATTTTTCACTCCATAATGTATAAATGCTTAAGCATGTAAACATGTAAATACTGTTAATTGCAGTATGTTTGTTAACTTCTGTTACTGACAATGCTTAATCTGGCTTGTTTTAATATACTTTCTCTGTTTATATTTAGTTGACATAGTTTAACTTAAACACTATTCATACACCTTTCTTTAACCGGATTTTGTTATTTATGCATAAGGTAAAGTATAGTAATGTGAGATCTTGTTAAATTCTCTTGATAAATATTTTCAAAATATTTTTTTAACTATTTTTAATATAATCAAAGATATTAATGATAAAAGATGTGCATCGACAAATGTGAGTAAAGAAATGTGTCAACTAAATAAGAACGGATGAAGTATTTGAACTTCTAGTATCTTTCTTGTGGCATTGTCATTTTTTCTTTTATTTTCTCTAGATTCCTTCAAATAGGACAAGGTACTAGAAACTTTGATTCCCGTCCTTTAGAAGTAACTTTTCCGCTTCCTATTGTTAGAAGAATAAGCTTGAGGGGCTTCATTTTATTTCTCTAATTTCAGGAGATATATACTGTCTGTTTTTGTGTGATGCACTATGAATCCACTGTTTCTTCTTATCTTTGCTGTTTTTAACACAAGCTTTGAGTTGTCTGTGAGAAATTGAAAATTTAGCTTTAAAAAAAACAGAAAAAGAAAGCAGCTCTTTTGTGATTCTGACTTGGGCGATTATGTTCGTTTCATGTGCCTGAATATTGTTGTATCAGACATTTTGTTTGGAAATTTTGAATACATATTTATCTTTCTTATTATCAGCATGTTTTGCAGCTGTCGTTACTAAATCAGTAAATTTCTATCTGAAACAAAATGTATCATTGTGAACTTCAAAGATGTTAAGAAAATTATGCATGTAGTTTCTGACGGTATGTAAGTATGTAACGTGAACGAGTGTGATTTATGGAGGCTCTGCAAGAGGCAGCCAAATCTCTGTTGAGGTTCAGGGGTAGCCTTTTAGATTTTGCTGTGTGGTTATTCTTGCTTACATGTGTAATACTAACAACACCTTGCCTTGTGATGCTCTTTCATGCTAGTGTAGCTCTTGCCTTTACTTCTTTGATTTAAAGATAAATGAATAAAGGTCATTATGTAGATAACAGTATTCTATTGGCCATGATAATAATTTAGAACCATCTCGAAGAGAACGAAAAATCAAATTATGTGGATTCCCTTTTAAAAAGGCCAGATTTGCGTGGAAGTTACTGGTAAATTTAACCTTTGGTTCTCAAGGGAGTAGGTTTTTTGAAGTCTTCTAGGCCATTTTGGAACAATGAAGTAGTTTTCAATAGCTTTACAGATAATAAGTTGTGATATCTATAGTGATCGACTTGTTTGGAAGTGGCCTGTCTGCTTGACGATTACTTGTCAATTTTGGCATATCTGATAGCGGTAAATCATTTGAAGCATTTTATTATTTCTGTGGTCTTGCTGGTATGTAGGAACTTGTGATTGGTAGTTGTGGTTTAATTGTTTGCGATTCGGTTAAGTTACGTTTTTGGTTCAATATGTTGTAAGGGGTGTTGTTATACACATTCTTTTAGAGACGAGTTGTATTAAATCAAGTTGTGTTGCATACTCTGTTATTATTGTATAAAGTACCAGCACCTTTTTGGTCCCCTTGGCCTCTGTAGGAAGTGCCTTTACTTAATTCTGTGAAGGGCGGGGAATCTGTAGCCTAAATCAGTTAGTATTCTTTCGTGTGCTTTCATGCTACCTAGTAAAGTTTTGTGTTGCTCTGTTTCTGTAGAGAGGGATTTACCGTCCCTTTTGTTTTGTGTGGCCTCCCAATTCACACCTTCTGCAACTTTGATTTAGCTACTCGATTCTTGTTGTTTTGCAGTACATCTGGATGTCCATTTGGAGAAAATTGTCACTTTCTGCATCATGTTGCTGGTGGTTACAATGCTGTTGCTCAGTTGATGAACTTACCGCCCATGTCAAGAAATGCTCCACCACCCCCTCCACAGGCACACAATGGCTCTGCTGCTACTGCCAAAACTCGCTTATGCAACAAATTCAGCTCTCCTGATGGGTGCAAATATGGTGATAAATGCCATTTTGCCCACGGTGAGTGGGAACTCAATAAATCTGTTGCTCCACCAACCTTTGATGATCCTCGTGCTAGGGGGGGCCATCCTATGCACGGTCGCTTTTCTGGGAGACATGAACCACCTGTTCCCACTGGTTTTGGTGCCACCTTTGGCGAATCAGCAACTGCTAAGATTAGTGTTGATGCCTCCCTAGCTGGGGCCATCATCGGTAAGAGTGGTGTCAACTCGAAACAGATTTGCCGTCAAACAGGTGTGAAGCTTTCGATTCGGGATCATGATTCAGATTCTACAAAGAGGAACATTGAACTGGAAGGCACCCTAGATCAGATCAAGATGGCAACTGACATGGTACATGATCTTGTAGCAAGTGTCAGTGCAAATGCCCCCTTTAAGGGTTCTGGAGGACCTGCACCACCTCATGGACCTGCCTCGACCAATTACAGGACCAAGATTTGTGAGAACTTTACAAAGGGTTCATGTACTTTCGGAGACAGGTGCCACTTTGCTCATGGGGCTGCGGAGCTACGGAAGTCAGGAGTATGAGAGCCTTTGCGGATCCCAATTTTGTTAGTTGGGTTTTCAGTCTTAATGACAGTCTTGAATATGGCTAATCAAATCTAGACTCTGGAGTAAAATGAGGTTCAATGATTCCCTAGATTTGGCTTATTCGCTTATGGTCATTTGTAGTTTGTTTGTTTTCCTTAGGCTTTGTGTTTAGATGATACTTGATTTGTTTTTCCACCTCTATTAGATAGATTTCTGCTAAATATGGGAGGTACCTAATTGCCTGCAAGAAAGAGAAGAGGAGAAAAAGAAGTATGGAGTAAAAACAACTTTGCTGCATTGTGATGTAATTTTGTCCTGGAGCTGTTATCAGAGTAAGAGTAATGCAGTATCTGCTGTGTGTTTGAAATAGTTATGTCATGATCATAGAACACAGACTCCTCTATGTTTAGAATATGCATTAGGTGGCTAATAACTCCTTTTCGTGTACTTTATCTACTTGCTCAGCCCGTAATTGACACATCGATGAAAATCATTCAACTTCAAAGTGTTTGCGGCATATATATATATGGGGTAGTTTTAGTTTTTGTCAAGATTTTAGAAAAGATTGGTTTTTGTT

mRNA sequence

TAAAAAAAATCCTTGTTTTCTAAAAATAACCTCCAGCGCTCAAAATTTTCTCTCTCTTTCTTCGAGGCGTCTCTTCCTCAAGCTACGTTTTCTCTCTCTTCCCCAACCTCTAAACCCTAGTTTCTGCTAGGGTTTCTACCTTACTCAAATTTTCTCATTTTCTTCATTTTTTCTAGGGTTCGTGAAATTTATTCTTCAATTTTGCAGTTTTAGTTTATTTTTGTTGTTTAAAGCTCGATTTAGCTCGAATCTCCAACTTCAATGGACGGCCGAAAGAGAGGAAGGCATGATGCTGGCAGTGCACACTCTAATGGGGGATTCAAGAAGCACAAACAAGAAACGGATGGTATAGGAAGCAAATCAAAGCCTTGCACCAAGTTCTTCAGTACATCTGGATGTCCATTTGGAGAAAATTGTCACTTTCTGCATCATGTTGCTGGTGGTTACAATGCTGTTGCTCAGTTGATGAACTTACCGCCCATGTCAAGAAATGCTCCACCACCCCCTCCACAGGCACACAATGGCTCTGCTGCTACTGCCAAAACTCGCTTATGCAACAAATTCAGCTCTCCTGATGGGTGCAAATATGGTGATAAATGCCATTTTGCCCACGGTGAGTGGGAACTCAATAAATCTGTTGCTCCACCAACCTTTGATGATCCTCGTGCTAGGGGGGGCCATCCTATGCACGGTCGCTTTTCTGGGAGACATGAACCACCTGTTCCCACTGGTTTTGGTGCCACCTTTGGCGAATCAGCAACTGCTAAGATTAGTGTTGATGCCTCCCTAGCTGGGGCCATCATCGGTAAGAGTGGTGTCAACTCGAAACAGATTTGCCGTCAAACAGGTGTGAAGCTTTCGATTCGGGATCATGATTCAGATTCTACAAAGAGGAACATTGAACTGGAAGGCACCCTAGATCAGATCAAGATGGCAACTGACATGGTACATGATCTTGTAGCAAGTGTCAGTGCAAATGCCCCCTTTAAGGGTTCTGGAGGACCTGCACCACCTCATGGACCTGCCTCGACCAATTACAGGACCAAGATTTGTGAGAACTTTACAAAGGGTTCATGTACTTTCGGAGACAGGTGCCACTTTGCTCATGGGGCTGCGGAGCTACGGAAGTCAGGAGTATGAGAGCCTTTGCGGATCCCAATTTTGTTAGTTGGGTTTTCAGTCTTAATGACAGTCTTGAATATGGCTAATCAAATCTAGACTCTGGAGTAAAATGAGGTTCAATGATTCCCTAGATTTGGCTTATTCGCTTATGGTCATTTGTAGTTTGTTTGTTTTCCTTAGGCTTTGTGTTTAGATGATACTTGATTTGTTTTTCCACCTCTATTAGATAGATTTCTGCTAAATATGGGAGGTACCTAATTGCCTGCAAGAAAGAGAAGAGGAGAAAAAGAAGTATGGAGTAAAAACAACTTTGCTGCATTGTGATGTAATTTTGTCCTGGAGCTGTTATCAGAGTAAGAGTAATGCAGTATCTGCTGTGTGTTTGAAATAGTTATGTCATGATCATAGAACACAGACTCCTCTATGTTTAGAATATGCATTAGGTGGCTAATAACTCCTTTTCGTGTACTTTATCTACTTGCTCAGCCCGTAATTGACACATCGATGAAAATCATTCAACTTCAAAGTGTTTGCGGCATATATATATATGGGGTAGTTTTAGTTTTTGTCAAGATTTTAGAAAAGATTGGTTTTTGTT

Coding sequence (CDS)

ATGGACGGCCGAAAGAGAGGAAGGCATGATGCTGGCAGTGCACACTCTAATGGGGGATTCAAGAAGCACAAACAAGAAACGGATGGTATAGGAAGCAAATCAAAGCCTTGCACCAAGTTCTTCAGTACATCTGGATGTCCATTTGGAGAAAATTGTCACTTTCTGCATCATGTTGCTGGTGGTTACAATGCTGTTGCTCAGTTGATGAACTTACCGCCCATGTCAAGAAATGCTCCACCACCCCCTCCACAGGCACACAATGGCTCTGCTGCTACTGCCAAAACTCGCTTATGCAACAAATTCAGCTCTCCTGATGGGTGCAAATATGGTGATAAATGCCATTTTGCCCACGGTGAGTGGGAACTCAATAAATCTGTTGCTCCACCAACCTTTGATGATCCTCGTGCTAGGGGGGGCCATCCTATGCACGGTCGCTTTTCTGGGAGACATGAACCACCTGTTCCCACTGGTTTTGGTGCCACCTTTGGCGAATCAGCAACTGCTAAGATTAGTGTTGATGCCTCCCTAGCTGGGGCCATCATCGGTAAGAGTGGTGTCAACTCGAAACAGATTTGCCGTCAAACAGGTGTGAAGCTTTCGATTCGGGATCATGATTCAGATTCTACAAAGAGGAACATTGAACTGGAAGGCACCCTAGATCAGATCAAGATGGCAACTGACATGGTACATGATCTTGTAGCAAGTGTCAGTGCAAATGCCCCCTTTAAGGGTTCTGGAGGACCTGCACCACCTCATGGACCTGCCTCGACCAATTACAGGACCAAGATTTGTGAGAACTTTACAAAGGGTTCATGTACTTTCGGAGACAGGTGCCACTTTGCTCATGGGGCTGCGGAGCTACGGAAGTCAGGAGTATGA

Protein sequence

MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAGGYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANAPFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20235	Spo20235	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20235.1	Spo20235.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20235.1.utr5p.1	Spo20235.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20235.1.CDS.3	Spo20235.1.CDS.3	CDS
Spo20235.1.CDS.2	Spo20235.1.CDS.2	CDS
Spo20235.1.CDS.1	Spo20235.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20235.1.utr3p.1	Spo20235.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20235.1.exon.3	Spo20235.1.exon.3	exon
Spo20235.1.exon.2	Spo20235.1.exon.2	exon
Spo20235.1.exon.1	Spo20235.1.exon.1	exon

Homology

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BLAST of Spo20235.1 vs. NCBI nr
Match: gi|902216975|gb|KNA17573.1| (hypothetical protein SOVF_078730 [Spinacia oleracea])

HSP 1 Score: 609.4 bits (1570), Expect = 3.300e-171
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG 60
           MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG
Sbjct: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG 60

Query: 61  GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEW 120
           GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEW
Sbjct: 61  GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEW 120

Query: 121 ELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAI 180
           ELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAI
Sbjct: 121 ELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAI 180

Query: 181 IGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANA 240
           IGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANA
Sbjct: 181 IGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANA 240

Query: 241 PFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
           PFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV
Sbjct: 241 PFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 292

[Close]

BLAST of Spo20235.1 vs. NCBI nr
Match: gi|731323870|ref|XP_010672666.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 476.1 bits (1224), Expect = 4.400e-131
Identity = 244/308 (79.22%), Postives = 260/308 (84.42%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD--GIGSKSKPCTKFFSTSGCPFGENCHFLHHV 60
           MD RKR RHDAG+A++NGGFKK KQE+D  GIGSKSKPCTKFFSTSGCPFGE+CHFLHHV
Sbjct: 1   MDARKR-RHDAGAANANGGFKKFKQESDSSGIGSKSKPCTKFFSTSGCPFGESCHFLHHV 60

Query: 61  AGGYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHG 120
            GGYNAV+Q+MNLP +SR APPPP QA NGSAAT KTRLCNK+SS +GCKYGDKCHFAHG
Sbjct: 61  PGGYNAVSQMMNLPTISRVAPPPP-QAPNGSAATVKTRLCNKYSSAEGCKYGDKCHFAHG 120

Query: 121 EWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAG 180
           EWELNK V P +FDDPRA GG PMHGRF GR+E  VP    A FG SATAKISVDASLAG
Sbjct: 121 EWELNKPVVP-SFDDPRAMGGLPMHGRFLGRNESHVPAALPAGFGASATAKISVDASLAG 180

Query: 181 AIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSA 240
           AIIGKSGVNSKQICRQTGVKLSIRDHDSD TKRNIELEG  DQIKMA+DMVHDLVASV A
Sbjct: 181 AIIGKSGVNSKQICRQTGVKLSIRDHDSDPTKRNIELEGNFDQIKMASDMVHDLVASVGA 240

Query: 241 NAPFKGSGGP--------------APPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGA 293
           NAP K SGGP              +  HGPAS+NYRTK+CENFTKGSCTFGDRCHFAHGA
Sbjct: 241 NAPMKASGGPGGHGPGGHGPGGHGSAAHGPASSNYRTKLCENFTKGSCTFGDRCHFAHGA 300

[Close]

BLAST of Spo20235.1 vs. NCBI nr
Match: gi|595805980|ref|XP_007202376.1| (hypothetical protein PRUPE_ppa009316mg [Prunus persica])

HSP 1 Score: 386.7 bits (992), Expect = 3.500e-104
Identity = 196/300 (65.33%), Postives = 237/300 (79.00%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD----GIGSKSKPCTKFFSTSGCPFGENCHFLH 60
           MD RKRGRH+AG+ H+NGGFKK+KQE +    G+GSKSKPCTKFFST+GCPFGE+CHFLH
Sbjct: 2   MDTRKRGRHEAGAFHANGGFKKNKQELESFSTGVGSKSKPCTKFFSTAGCPFGESCHFLH 61

Query: 61  HVAGGYNAVAQLMNLPPM---SRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKC 120
           +V GGYNAVAQ+MNL P    SRN  PPP  ++  S++  K+RLCNK++S +GCK+GDKC
Sbjct: 62  YVPGGYNAVAQMMNLAPAPQASRNIAPPPSNSNGSSSSAVKSRLCNKYNSAEGCKFGDKC 121

Query: 121 HFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVD 180
           HFAHGEWEL K +A  + DDPRA G  P  GR +   EPP+  G  ++FG S+TAKISVD
Sbjct: 122 HFAHGEWELGKHLAQ-SHDDPRAMGPGP--GRMTNWMEPPL-AGPASSFGASSTAKISVD 181

Query: 181 ASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLV 240
           ASLAGAIIGK GVNSKQICRQTG KLSIR+H+SD   RNIELEGT +QI+ A+ MV +L+
Sbjct: 182 ASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIQQASAMVRELI 241

Query: 241 ASVSANAPFKGSGGPAP-PHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
            +VS + P K  GG AP    P  +NY+TK+C+NFTKG+CTFGDRCHFAHGAAELRKSG+
Sbjct: 242 VTVSMSGPAKTPGGGAPGAPAPPGSNYKTKLCDNFTKGTCTFGDRCHFAHGAAELRKSGM 297

[Close]

BLAST of Spo20235.1 vs. NCBI nr
Match: gi|645271493|ref|XP_008240939.1| (PREDICTED: zinc finger CCCH domain-containing protein 14 [Prunus mume])

HSP 1 Score: 385.2 bits (988), Expect = 1.000e-103
Identity = 195/300 (65.00%), Postives = 237/300 (79.00%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD----GIGSKSKPCTKFFSTSGCPFGENCHFLH 60
           MD RKRGRH+AG+ H+NGGFKK+KQE +    G+GSKSKPCTKFFST+GCPFGE+CHFLH
Sbjct: 2   MDTRKRGRHEAGAFHANGGFKKNKQELESFSTGVGSKSKPCTKFFSTAGCPFGESCHFLH 61

Query: 61  HVAGGYNAVAQLMNLPPM---SRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKC 120
           +V GGYNAVAQ+MNL P    SRN  PPP  ++  S++  K+RLCNK++S +GCK+GDKC
Sbjct: 62  YVPGGYNAVAQMMNLAPAPQASRNIAPPPSNSNGSSSSAVKSRLCNKYNSAEGCKFGDKC 121

Query: 121 HFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVD 180
           HFAHGEWEL K +A  + DDPRA G  P  GR +   EPP+  G  ++FG S+TAKISVD
Sbjct: 122 HFAHGEWELGKHLAQ-SHDDPRAMGPGP--GRMTNWMEPPL-AGPASSFGASSTAKISVD 181

Query: 181 ASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLV 240
           ASLAGAIIGK GVNSKQICRQTG KLSIR+H+SD   RNIELEGT +QI+ A+ MV +L+
Sbjct: 182 ASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIQQASAMVRELI 241

Query: 241 ASVSANAPFKGSGGPAP-PHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
            +VS + P K  GG AP    P  +NY+TK+C+NFTKG+CTFG+RCHFAHGAAELRKSG+
Sbjct: 242 VTVSMSGPAKTPGGGAPGAPAPPGSNYKTKLCDNFTKGTCTFGERCHFAHGAAELRKSGM 297

[Close]

BLAST of Spo20235.1 vs. NCBI nr
Match: gi|694402241|ref|XP_009376126.1| (PREDICTED: zinc finger CCCH domain-containing protein 14-like [Pyrus x bretschneideri])

HSP 1 Score: 374.4 bits (960), Expect = 1.800e-100
Identity = 192/301 (63.79%), Postives = 233/301 (77.41%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD----GIGSKSKPCTKFFSTSGCPFGENCHFLH 60
           MD RKRGRH+ G  HSNGGFKK+KQE +    G+GSKSKPCTKFFST+GCPFGE+CHFLH
Sbjct: 1   MDTRKRGRHEGGGFHSNGGFKKNKQELESFSTGVGSKSKPCTKFFSTAGCPFGESCHFLH 60

Query: 61  HVAGGYNAVAQLMNL---PPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKC 120
           +V GGYNAVAQ+MNL   PP  RN P PP  ++  +++  K+R+CNK++S +GCK+GDKC
Sbjct: 61  YVPGGYNAVAQMMNLAPAPPPPRNIPGPPSHSNGSNSSGVKSRICNKYNSAEGCKFGDKC 120

Query: 121 HFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVD 180
           HFAHGEWEL K +A  + DDP A G  P  GR     EP  P    ++FG S+TAKISVD
Sbjct: 121 HFAHGEWELGKPLAQ-SHDDPHAMGPGP--GRMGNWMEPH-PARPASSFGASSTAKISVD 180

Query: 181 ASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLV 240
           ASLAGAIIGK GV+SKQICRQTG KLSIRDH+S+   RNIELEGT +QI+ A+ MV +L+
Sbjct: 181 ASLAGAIIGKGGVHSKQICRQTGAKLSIRDHESNPNLRNIELEGTFEQIQQASAMVSELI 240

Query: 241 ASVSANAPFK--GSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSG 293
           A+VS + P K  G GGP  P  P  +N++TK+C+NFTKG+CTFG+RCHFAHGAAELRKSG
Sbjct: 241 ATVSISGPGKAPGGGGPGAP-APPGSNFKTKLCDNFTKGTCTFGERCHFAHGAAELRKSG 296

[Close]

BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RDP7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078730 PE=4 SV=1)

HSP 1 Score: 609.4 bits (1570), Expect = 2.300e-171
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG 60
           MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG
Sbjct: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETDGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG 60

Query: 61  GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEW 120
           GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEW
Sbjct: 61  GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEW 120

Query: 121 ELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAI 180
           ELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAI
Sbjct: 121 ELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAGAI 180

Query: 181 IGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANA 240
           IGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANA
Sbjct: 181 IGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSANA 240

Query: 241 PFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
           PFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV
Sbjct: 241 PFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 292

[Close]

BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNI7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060310 PE=4 SV=1)

HSP 1 Score: 476.1 bits (1224), Expect = 3.100e-131
Identity = 244/308 (79.22%), Postives = 260/308 (84.42%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD--GIGSKSKPCTKFFSTSGCPFGENCHFLHHV 60
           MD RKR RHDAG+A++NGGFKK KQE+D  GIGSKSKPCTKFFSTSGCPFGE+CHFLHHV
Sbjct: 1   MDARKR-RHDAGAANANGGFKKFKQESDSSGIGSKSKPCTKFFSTSGCPFGESCHFLHHV 60

Query: 61  AGGYNAVAQLMNLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHG 120
            GGYNAV+Q+MNLP +SR APPPP QA NGSAAT KTRLCNK+SS +GCKYGDKCHFAHG
Sbjct: 61  PGGYNAVSQMMNLPTISRVAPPPP-QAPNGSAATVKTRLCNKYSSAEGCKYGDKCHFAHG 120

Query: 121 EWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDASLAG 180
           EWELNK V P +FDDPRA GG PMHGRF GR+E  VP    A FG SATAKISVDASLAG
Sbjct: 121 EWELNKPVVP-SFDDPRAMGGLPMHGRFLGRNESHVPAALPAGFGASATAKISVDASLAG 180

Query: 181 AIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVASVSA 240
           AIIGKSGVNSKQICRQTGVKLSIRDHDSD TKRNIELEG  DQIKMA+DMVHDLVASV A
Sbjct: 181 AIIGKSGVNSKQICRQTGVKLSIRDHDSDPTKRNIELEGNFDQIKMASDMVHDLVASVGA 240

Query: 241 NAPFKGSGGP--------------APPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGA 293
           NAP K SGGP              +  HGPAS+NYRTK+CENFTKGSCTFGDRCHFAHGA
Sbjct: 241 NAPMKASGGPGGHGPGGHGPGGHGSAAHGPASSNYRTKLCENFTKGSCTFGDRCHFAHGA 300

[Close]

BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
Match: M5W9V3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009316mg PE=4 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 2.500e-104
Identity = 196/300 (65.33%), Postives = 237/300 (79.00%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD----GIGSKSKPCTKFFSTSGCPFGENCHFLH 60
           MD RKRGRH+AG+ H+NGGFKK+KQE +    G+GSKSKPCTKFFST+GCPFGE+CHFLH
Sbjct: 2   MDTRKRGRHEAGAFHANGGFKKNKQELESFSTGVGSKSKPCTKFFSTAGCPFGESCHFLH 61

Query: 61  HVAGGYNAVAQLMNLPPM---SRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKC 120
           +V GGYNAVAQ+MNL P    SRN  PPP  ++  S++  K+RLCNK++S +GCK+GDKC
Sbjct: 62  YVPGGYNAVAQMMNLAPAPQASRNIAPPPSNSNGSSSSAVKSRLCNKYNSAEGCKFGDKC 121

Query: 121 HFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVD 180
           HFAHGEWEL K +A  + DDPRA G  P  GR +   EPP+  G  ++FG S+TAKISVD
Sbjct: 122 HFAHGEWELGKHLAQ-SHDDPRAMGPGP--GRMTNWMEPPL-AGPASSFGASSTAKISVD 181

Query: 181 ASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLV 240
           ASLAGAIIGK GVNSKQICRQTG KLSIR+H+SD   RNIELEGT +QI+ A+ MV +L+
Sbjct: 182 ASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIQQASAMVRELI 241

Query: 241 ASVSANAPFKGSGGPAP-PHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
            +VS + P K  GG AP    P  +NY+TK+C+NFTKG+CTFGDRCHFAHGAAELRKSG+
Sbjct: 242 VTVSMSGPAKTPGGGAPGAPAPPGSNYKTKLCDNFTKGTCTFGDRCHFAHGAAELRKSGM 297

[Close]

BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
Match: F6HLJ6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06400 PE=4 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.700e-100
Identity = 200/306 (65.36%), Postives = 232/306 (75.82%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD----GIGSKSKPCTKFFSTSGCPFGENCHFLH 60
           MD RKRGR   G+ ++NGGFKK KQE +    GIGSKSKPCTKFFSTSGCPFGE+CHFLH
Sbjct: 1   MDTRKRGR-PGGALNANGGFKKSKQEVESLSTGIGSKSKPCTKFFSTSGCPFGESCHFLH 60

Query: 61  HVAGGYNAVAQLMN----LPPMSRNAPPPPPQAHNGSAATA-KTRLCNKFSSPDGCKYGD 120
           +V GGYNAVAQ+ N    LPP SRN   PPP   NGS+  A K+++CNKF++ +GCK+GD
Sbjct: 61  YVPGGYNAVAQMTNQAPILPPASRNMAGPPPPVPNGSSMPAVKSKMCNKFNTAEGCKFGD 120

Query: 121 KCHFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKIS 180
           KCHFAHGEWEL K +AP   DDPRA G  P  GR +GR EP  PTG  A+FG SATAKIS
Sbjct: 121 KCHFAHGEWELGKPLAP-YHDDPRAMGSIP--GRLAGRIEPS-PTGPAASFGASATAKIS 180

Query: 181 VDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHD 240
           VDASLAGAIIGK GVNSKQICRQTG KLSIR+HDSD   RNIELEGT +QIK A+ MV +
Sbjct: 181 VDASLAGAIIGKGGVNSKQICRQTGAKLSIREHDSDPNLRNIELEGTFEQIKEASAMVRE 240

Query: 241 LVASVS-----ANAPFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAE 293
           L+ ++S     A       GG APP    ++NY+TK+C+NFTKGSCTFG+RCHFAHGA E
Sbjct: 241 LIVNISAMPGHARTTAMPGGGQAPP----ASNYKTKLCDNFTKGSCTFGERCHFAHGAGE 297

[Close]

BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
Match: A0A061EXS8_THECC (KH domain-containing protein / zinc finger family protein isoform 1 OS=Theobroma cacao GN=TCM_024899 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.200e-98
Identity = 198/299 (66.22%), Postives = 231/299 (77.26%), Query Frame = 1


		  
Query: 1   MDGRKRGRHDAGSAHSNGGFKKHKQETD--GIGSKSKPCTKFFSTSGCPFGENCHFLHHV 60
           MD RKRGR +AG  +SNGGFKK K E +  G+GSKSKPCTKFFST+GCPFGE+CHFLH+V
Sbjct: 1   MDTRKRGRPEAGF-NSNGGFKKTKPEMESTGVGSKSKPCTKFFSTAGCPFGESCHFLHYV 60

Query: 61  AGGYNAVAQLMNL----PPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCH 120
            GGYNAVAQ+MNL    PP SRN   PPP   NGS+A  KTRLCNKFSS +GCK+GDKCH
Sbjct: 61  PGGYNAVAQIMNLAPAVPPASRNMAAPPP-IPNGSSAV-KTRLCNKFSSAEGCKFGDKCH 120

Query: 121 FAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFGATFGESATAKISVDA 180
           FAHG+WEL K +AP + DDPR  G   + GR   R EPP P+G  A+FG SATAKISVDA
Sbjct: 121 FAHGDWELGKPIAP-SHDDPR--GMATIAGRMGSRMEPPPPSGPAASFGASATAKISVDA 180

Query: 181 SLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLVA 240
           SLAGAIIGK GV+SKQICR+TG KLSIR+H+SD T RNIELEG+ +QIK A+ MV +L++
Sbjct: 181 SLAGAIIGKGGVHSKQICRRTGAKLSIREHESDPTLRNIELEGSFEQIKQASAMVRELIS 240

Query: 241 SVS-ANAPFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
           S+   + P K  G P     P S NY+TK+C+NF KGSCTFG+RCHFAHG AELRKS V
Sbjct: 241 SLGPVSGPAKTPGVPGGQGHPGS-NYKTKLCDNFAKGSCTFGERCHFAHGTAELRKSAV 292

[Close]

BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
Match: C3H31_ORYSJ (Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa subsp. japonica GN=Os04g0665700 PE=2 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 5.000e-82
Identity = 165/303 (54.46%), Postives = 199/303 (65.68%), Query Frame = 1


		  
Query: 4   RKRGRHDAGSAHSNGGFKKHKQET--DGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAGG 63
           RKR R D  +  + GG +  + E+   G+ SK KPCTKFFST GCPFGE CHF H V GG
Sbjct: 8   RKRSRPDTANGGAAGGKRSRETESFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPGG 67

Query: 64  YNAVAQLMNLPPMSRNAPPPPPQAHNGS-----AATAKTRLCNKFSSPDGCKYGDKCHFA 123
           Y AVA+ +NL   +  AP   P  H        A++ KTR+C K+++ +GCK+GDKCHFA
Sbjct: 68  YQAVAKTLNLGNPAVPAPARAPMDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFA 127

Query: 124 HGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPPVPTGFG---ATFGESATAKISVD 183
           HGE EL K    P +    +    PM GR+ GR EPP P   G     FG SATAKISVD
Sbjct: 128 HGERELGK----PAYMSHESAMAPPMGGRYGGRPEPPPPAAMGPPAGNFGASATAKISVD 187

Query: 184 ASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLV 243
           ASLAG IIGK GVN+KQICR TGVKLSIRDH+SDS  +NIELEG  DQIK A++MV +L+
Sbjct: 188 ASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQASNMVGELI 247

Query: 244 ASVSANAPFKGSGGPAPPHGPAS-------TNYRTKICENFTKGSCTFGDRCHFAHGAAE 290
           A++S + P K   G A    PA        +NY+TK+CENF KG+CTFGDRCHFAHG  E
Sbjct: 248 ATISPSTPAKKPAGSAAGAAPAGRGGPGGRSNYKTKLCENFVKGTCTFGDRCHFAHGENE 306

[Close]

BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
Match: C3H14_ORYSJ (Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa subsp. japonica GN=Os02g0194200 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.700e-80
Identity = 171/304 (56.25%), Postives = 207/304 (68.09%), Query Frame = 1


		  
Query: 3   GRKRGRHDAGSAHSNGGFKKHKQET--DGIGSKSKPCTKFFSTSGCPFGENCHFLHHVAG 62
           GRKRG+ D   A+  GG +  + E+   G+GSKSKPCTKFFSTSGCPFGE CHFLHH  G
Sbjct: 5   GRKRGKPDG--ANGAGGKRARESESFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHFPG 64

Query: 63  GYNAVAQLMNLPPMSRNAPPPPPQAHNGSAA-------TAKTRLCNKFSSPDGCKYGDKC 122
           GY AVA++ NL   +    PPP +   G+A        T KTRLCNK+++ +GCK+GDKC
Sbjct: 65  GYQAVAKMTNLGGPA--IAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKC 124

Query: 123 HFAHGEWELNKSVAPPTFDDPRARGGHPMHGRFSGRHEPP-VPT---GFGATFGESATAK 182
           HFAHGE EL K +   +   P      PM  R +G   PP +P+      A+FG SATAK
Sbjct: 125 HFAHGERELGKPMLMDSSMPP------PMGPRPTGHFAPPPMPSPAMSTPASFGASATAK 184

Query: 183 ISVDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMV 242
           ISVDASLAG IIG+ GVN+KQI R TG KL+IRDH+SD+  +NIELEGT DQIK A+ MV
Sbjct: 185 ISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMV 244

Query: 243 HDLVASVSANAPFKGS---GGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAE 291
            +L+ S+   AP +G    GG     GP S N++TK+CENFTKGSCTFGDRCHFAHG  E
Sbjct: 245 RELIVSIGGGAPPQGKKPVGGSHRGGGPGS-NFKTKLCENFTKGSCTFGDRCHFAHGENE 297

[Close]

BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
Match: C3H44_ORYSJ (Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa subsp. japonica GN=Os06g0618100 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.700e-70
Identity = 151/296 (51.01%), Postives = 188/296 (63.51%), Query Frame = 1


		  
Query: 7   GRHDAGSAHSNGGFKKHKQETD---GIGSKSKPCTKFFSTSGCPFGENCHFLHHVAGGYN 66
           G   A    +NG  K+ +       G+GSK KPCTKFFSTSGCPFG +CHFLH+  GGY 
Sbjct: 5   GGKRAAPEGTNGAAKRARASESSQVGVGSKLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQ 64

Query: 67  AVAQLMNLPPMSRNAPPPP----PQAHNGS-AATAKTRLCNKFSSPDGCKYGDKCHFAHG 126
           A A++ +    +  APP      P A NG   ++ KTR+CNK+++ +GCK+G KCHFAHG
Sbjct: 65  AAAKMTSHGGTAVAAPPGRMPLGPGAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHG 124

Query: 127 EWELNKSVAPPTFDD--PRARGGHPMHGRFSGRHEPPVPTGF---GATFGESATAKISVD 186
           E EL K   P   D+  P   G  P          PP+P       +TFG SATAKISVD
Sbjct: 125 ERELGK---PMLLDNSMPHPMGSMPFEA-------PPMPGPDIVPPSTFGASATAKISVD 184

Query: 187 ASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDSDSTKRNIELEGTLDQIKMATDMVHDLV 246
           ASLAG IIGK G N+K I R TG KL+IRD++S+   +NIELEGT DQIK A+ MV +L+
Sbjct: 185 ASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHASAMVTELI 244

Query: 247 ASVSANAPFKGSGGPAPPHGPASTNYRTKICENFTKGSCTFGDRCHFAHGAAELRK 290
             +S NAP   + G     G   +N++TK+CENF KGSCTFGDRCHFAHG +ELRK
Sbjct: 245 VRISGNAPPAKNPGRGSHAGGPGSNFKTKLCENFNKGSCTFGDRCHFAHGESELRK 290

[Close]

BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
Match: C3H36_ARATH (Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis thaliana GN=At3g12130 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.200e-48
Identity = 112/215 (52.09%), Postives = 139/215 (64.65%), Query Frame = 1


		  
Query: 93  AKTRLCNKFSSPDGCKYGDKCHFAH---GEWELNK---SVAPPTFDDPRARGGHPMHGRF 152
           +K++ C KF S  GC +G+ CHF H   G +       ++ PP     R   G    GRF
Sbjct: 37  SKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRF 96

Query: 153 SGRHEPPVPTGFGATFGESATAKISVDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDS 212
           SGR E     G  + FG+SATA+ SVDASLAGAIIGK GV+SKQICRQTGVKLSI+DH+ 
Sbjct: 97  SGRGESG--PGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHER 156

Query: 213 DSTKRNIELEGTLDQIKMATDMVHDLVASVSANA---PFKGSGG------PAPPHGPAST 272
           D   +NI LEGTL+QI  A+ MV DL+  +++ A   P  G GG         PH    +
Sbjct: 157 DPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPH--PGS 216

Query: 273 NYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
           N++TKICE F+KG+CTFGDRCHFAHG AELRKSG+
Sbjct: 217 NFKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247

[Close]

BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
Match: C3H52_ARATH (Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis thaliana GN=At5g06770 PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.400e-46
Identity = 103/207 (49.76%), Postives = 137/207 (66.18%), Query Frame = 1


		  
Query: 93  AKTRLCNKFSSPDGCKYGDKCHFAH---GEWELNKSVA---PPTFDDPR-ARGGHPMHGR 152
           +K++ C KF S  GC +GD CHF H   G +     +    PP     R  +G     GR
Sbjct: 37  SKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGR 96

Query: 153 FSGRHEPPVPTGFGATFGESATAKISVDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHD 212
           FSGR +P   +G  + FG S T+KISVDASLAGAIIGK G++SKQICR+TG KLSI+DH+
Sbjct: 97  FSGRGDPG--SGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHE 156

Query: 213 SDSTKRNIELEGTLDQIKMATDMVHDLVASVSANAPFKGSGGPAPPHGPASTNYRTKICE 272
            D   + IELEGT +QI +A+ MV +L+  + +    +G GGP     P S NY+TKIC+
Sbjct: 157 RDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGS-NYKTKICD 216

Query: 273 NFTKGSCTFGDRCHFAHGAAELRKSGV 293
            ++KG+CT+GDRCHFAHG +ELR+SG+
Sbjct: 217 RYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]

BLAST of Spo20235.1 vs. TAIR (Arabidopsis)
Match: AT3G12130.1 (KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 194.9 bits (494), Expect = 6.900e-50
Identity = 112/215 (52.09%), Postives = 139/215 (64.65%), Query Frame = 1


		  
Query: 93  AKTRLCNKFSSPDGCKYGDKCHFAH---GEWELNK---SVAPPTFDDPRARGGHPMHGRF 152
           +K++ C KF S  GC +G+ CHF H   G +       ++ PP     R   G    GRF
Sbjct: 37  SKSKPCTKFFSTSGCPFGENCHFLHYVPGGYNAVSQMTNMGPPIPQVSRNMQGSGNGGRF 96

Query: 153 SGRHEPPVPTGFGATFGESATAKISVDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHDS 212
           SGR E     G  + FG+SATA+ SVDASLAGAIIGK GV+SKQICRQTGVKLSI+DH+ 
Sbjct: 97  SGRGESG--PGHVSNFGDSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHER 156

Query: 213 DSTKRNIELEGTLDQIKMATDMVHDLVASVSANA---PFKGSGG------PAPPHGPAST 272
           D   +NI LEGTL+QI  A+ MV DL+  +++ A   P  G GG         PH    +
Sbjct: 157 DPNLKNIVLEGTLEQISEASAMVKDLIGRLNSAAKKPPGGGLGGGGGMGSEGKPH--PGS 216

Query: 273 NYRTKICENFTKGSCTFGDRCHFAHGAAELRKSGV 293
           N++TKICE F+KG+CTFGDRCHFAHG AELRKSG+
Sbjct: 217 NFKTKICERFSKGNCTFGDRCHFAHGEAELRKSGI 247

[Close]

BLAST of Spo20235.1 vs. TAIR (Arabidopsis)
Match: AT5G06770.1 (KH domain-containing protein / zinc finger (CCCH type) family protein)

HSP 1 Score: 186.8 bits (473), Expect = 1.900e-47
Identity = 103/207 (49.76%), Postives = 137/207 (66.18%), Query Frame = 1


		  
Query: 93  AKTRLCNKFSSPDGCKYGDKCHFAH---GEWELNKSVA---PPTFDDPR-ARGGHPMHGR 152
           +K++ C KF S  GC +GD CHF H   G +     +    PP     R  +G     GR
Sbjct: 37  SKSKPCTKFFSTSGCPFGDNCHFLHYVPGGYNAAAQMTNLRPPVSQVSRNMQGSGGPGGR 96

Query: 153 FSGRHEPPVPTGFGATFGESATAKISVDASLAGAIIGKSGVNSKQICRQTGVKLSIRDHD 212
           FSGR +P   +G  + FG S T+KISVDASLAGAIIGK G++SKQICR+TG KLSI+DH+
Sbjct: 97  FSGRGDPG--SGPVSIFGAS-TSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHE 156

Query: 213 SDSTKRNIELEGTLDQIKMATDMVHDLVASVSANAPFKGSGGPAPPHGPASTNYRTKICE 272
            D   + IELEGT +QI +A+ MV +L+  + +    +G GGP     P S NY+TKIC+
Sbjct: 157 RDPNLKIIELEGTFEQINVASGMVRELIGRLGSVKKPQGIGGPEGKPHPGS-NYKTKICD 216

Query: 273 NFTKGSCTFGDRCHFAHGAAELRKSGV 293
            ++KG+CT+GDRCHFAHG +ELR+SG+
Sbjct: 217 RYSKGNCTYGDRCHFAHGESELRRSGI 239

[Close]

BLAST of Spo20235.1 vs. TAIR (Arabidopsis)
Match: AT3G19360.1 (Zinc finger (CCCH-type) family protein)

HSP 1 Score: 66.2 bits (160), Expect = 3.700e-11
Identity = 42/119 (35.29%), Postives = 55/119 (46.22%), Query Frame = 1


		  
Query: 33  KSKPCTKFFSTSGCPFGENCHFLHH-----------------VAGGYNAVAQ----LMNL 92
           + K C KF     CP+G+ C+F+H                  ++ G  A  Q      NL
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIHEDLSKFREDSGKLRESSVISVGATAADQPSDTASNL 244

Query: 93  PPMSRNA--PPPPPQAHNGSAATA--KTRLCNKFSSPDGCKYGDKCHFAHGEWELNKSV 127
             ++R    P P P  + G   T   KTRLC KF     C +GDKCHFAHG+ EL+ SV
Sbjct: 245 IEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAELHNSV 303

[Close]

BLAST of Spo20235.1 vs. TAIR (Arabidopsis)
Match: AT1G68200.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.4 bits (119), Expect = 2.100e-6
Identity = 35/118 (29.66%), Postives = 50/118 (42.37%), Query Frame = 1


		  
Query: 18  GGFKKHKQETD--------GIGSKSKPCTKFFSTSGCPFGENCHFLHHVAGGYNAVAQLM 77
           GG KK  QE +        G+ +K++ C K+  T  CP+G++C F H +           
Sbjct: 202 GGGKKEDQEEEIEVEVYNQGM-TKTELCNKWQETGTCPYGDHCQFAHGIK---------- 261

Query: 78  NLPPMSRNAPPPPPQAHNGSAATAKTRLCNKFSSPDGCKYGDKCHFAHGEWELNKSVA 128
            L P+ R+                KT +C    + D C YG +CHF H   E  K VA
Sbjct: 262 ELRPVIRHP-------------RYKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEKLVA 295

[Close]

BLAST of Spo20235.1 vs. TAIR (Arabidopsis)
Match: AT2G35430.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.800e-6
Identity = 36/116 (31.03%), Postives = 50/116 (43.10%), Query Frame = 1


		  
Query: 33  KSKPCTKFFSTSGCPFG-ENCHFLHHVAGGYNAVAQLMNLPPMSRNAPPPPPQAHNGSAA 92
           K+K C KF + + CP+   +CHF H         A+ + LPP     PPPP      + A
Sbjct: 73  KTKLCFKFRAGT-CPYSASSCHFAHS--------AEELRLPP-----PPPPNWQETVTEA 132

Query: 93  TA------------------------KTRLCNKFSSPDGCKYGDKCHFAHGEWELN 124
           +                         KTR+CNK+ +   C +G  CHFAHG  EL+
Sbjct: 133 SRNRESFAVSLGPRGNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELH 174

The following BLAST results are available for this feature:

BLAST of Spo20235.1 vs. NCBI nr
BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
BLAST of Spo20235.1 vs. TAIR (Arabidopsis)

BLAST of Spo20235.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902216975\|gb\|KNA17573.1\|	3.3e-171	100.	hypothetical protein SOVF_0787...	[more]
gi\|731323870\|ref\|XP_010672666.1\|	4.4e-131	79.2	PREDICTED: zinc finger CCCH do...	[more]
gi\|595805980\|ref\|XP_007202376.1\|	3.5e-104	65.3	hypothetical protein PRUPE_ppa...	[more]
gi\|645271493\|ref\|XP_008240939.1\|	1.0e-103	65.0	PREDICTED: zinc finger CCCH do...	[more]
gi\|694402241\|ref\|XP_009376126.1\|	1.8e-100	63.7	PREDICTED: zinc finger CCCH do...	[more]

BLAST of Spo20235.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RDP7_SPIOL	2.3e-171	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CNI7_BETVU	3.1e-131	79.2	Uncharacterized protein OS=Bet...	[more]
M5W9V3_PRUPE	2.5e-104	65.3	Uncharacterized protein OS=Pru...	[more]
F6HLJ6_VITVI	3.7e-100	65.3	Putative uncharacterized prote...	[more]
A0A061EXS8_THECC	1.2e-98	66.2	KH domain-containing protein /...	[more]

BLAST of Spo20235.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
C3H31_ORYSJ	5.0e-82	54.4	Zinc finger CCCH domain-contai...	[more]
C3H14_ORYSJ	2.7e-80	56.2	Zinc finger CCCH domain-contai...	[more]
C3H44_ORYSJ	5.7e-70	51.0	Zinc finger CCCH domain-contai...	[more]
C3H36_ARATH	1.2e-48	52.0	Zinc finger CCCH domain-contai...	[more]
C3H52_ARATH	3.4e-46	49.7	Zinc finger CCCH domain-contai...	[more]

BLAST of Spo20235.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G12130.1	6.9e-50	52.0	KH domain-containing protein /...	[more]
AT5G06770.1	1.9e-47	49.7	KH domain-containing protein /...	[more]
AT3G19360.1	3.7e-11	35.2	Zinc finger (CCCH-type) family...	[more]
AT1G68200.1	2.1e-6	29.6	Zinc finger C-x8-C-x5-C-x3-H t...	[more]
AT2G35430.1	2.8e-6	31.0	Zinc finger C-x8-C-x5-C-x3-H t...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	GENE3D	4.10.1000.10		coord: 33..57 score: 2.7E-8coord: 94..123 score: 4.3E-13coord: 255..289 score: 1.7
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 259..283 score: 4.7E-8coord: 33..57 score: 2.0E-5coord: 94..119 score: 1.
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 258..284 score: 1.0E-7coord: 92..119 score: 0.0036coord: 31..58 score: 0
IPR000571	Zinc finger, CCCH-type	PROFILE	PS50103	ZF_C3H1	coord: 92..120 score: 13.413coord: 258..285 score: 16.586coord: 31..59 score: 1
IPR000571	Zinc finger, CCCH-type	unknown	SSF90229	CCCH zinc finger	coord: 257..288 score: 1.44E-8coord: 92..123 score: 3.53E-8coord: 32..58 score: 2.2
IPR004087	K Homology domain	SMART	SM00322	kh_6	coord: 164..234 score: 2.1
IPR004088	K Homology domain, type 1	GENE3D	3.30.1370.10		coord: 165..235 score: 5.2
IPR004088	K Homology domain, type 1	PFAM	PF00013	KH_1	coord: 167..230 score: 1.6
IPR004088	K Homology domain, type 1	PROFILE	PS50084	KH_TYPE_1	coord: 165..229 score: 14
IPR004088	K Homology domain, type 1	unknown	SSF54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 161..236 score: 1.46
None	No IPR available	PANTHER	PTHR10288	KH DOMAIN CONTAINING RNA BINDING PROTEIN	coord: 94..289 score: 9.9
None	No IPR available	PANTHER	PTHR10288:SF154	SUBFAMILY NOT NAMED	coord: 94..289 score: 9.9

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0000166	nucleotide binding