Spo20284.1 (mRNA) | SpinachBase

Overview


Name	Spo20284.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L27
Location	SpoScf_00665 : 256998 .. 258844 (+)
Sequence length	441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAGTTTCTGAAACCAGGGAAGGCGGTGATCGTGCTGCAAGGGCGTTACGCAGGGCGGAAGGCGGTGATTGTTCGCAACTTCGACGAAGGAAACCGTGAGCGACAATACGGACACTGCCTGGTGGCCGGCATCAACAAGTACCCCAAGAAGGTGATCAGAAAGGACTCAGCCAAGAAGCAGGCCAAGAAATCCCGCGTGAAATGCTTCGTCAAGGTCGTCAATTACAACCACATCATGCCTACTCGATACACTCTTGACGTTGATCTTAAGGATGTCGTCACTACTGATGTATTGACATCCAAGGACAAGAAGGTTACTGCTGCCAAGGAGACTAAGGCCAGGTTTGAGGAGAGGTTCAAGACTGGCAAGAACCGATGGTTCTTCTCTAAACTCAGGTTTTAAGTGACTTTTTTTTAAAGATTTACCAAGTAGAAGAAGAGAAGTTTTGTTACGTTTATGGTTTATTTTATTTTGAACCAAGTTTATGCTTTCCGGGTCGGATCTAATTTTGTTGATGGTGATTTTGCTGGAATTCTATATATTATGCTATGAACCCAATTTCGAATTTTTATGTTGTGATTTGTTATGTTTGTAACTTATCTATGTCTTGTTATTAGAATTTTATTAGGGTTGATTGCCTTGAGATATATTGTGTCCCATGATGTTAATCTATCCTTGACAAATTTTATAATGTCGCTAGTTTTAGGTGGTTTTCATGTGTAGTCATACCGCTAAATGTCGAAGTTTATTGCACTTAATTGTTTCGAAAGACTTGTTTGAGAAATTGATTCCCTTGTGTATACTCCTAATGTATTGGGTATTGGCAACTAAGCATAGCAAGAAAAAGAATGTGAACCAATGCAAGGATAAATAATTAGTAGGAAGCATTTGGTTGTTATTGAACTATCCATATCTAAGTGAAACAACTACTGTGAATTTTCAGATGTTGGTGTGCCGTATTTTGACATCAATAGAATTTATTATTGCTTAGTTTGTTATTATCTGATTGCCAGCAGCTTGAATTTGGTGGTAATTAGGACACGGTTGTGACTTGTGAGATCATGACCGGCCTGGCTACTGATGTCTATTATTTGCAAAGAGTAACTGGGTTTTGATGTAGACAAGAGATAAAAGCTCGCTTGGCGCATTGCTTTTACTTTAATGTTTTGGTGTATGGTGTAAGTTACTAAGTTAATAAAACAGAGTTCTTCTCTGACAACTCAACACTGGCTGCTAATAACTGGATAGTTGTTATATTTAGCAACTCTATATGCTATGAGCAGGGAGGTTTTTTTGAAGAATTTCTTTTACTGAAATTCAGCAGAAATGGGGAACTGAATTACTGGGTAGACCCCGACAGTGTATTTTTATTAAGTATCTCCAAATTTTTAAAAATTTTAAAATTTTGTATGGGGAACAGAGTTTGAGTCGTATATGATTTTAAGCACTGAGATTTCTGTCCTTGTTCCAATTGCAATGGGGGATCAAGTTATATTTAAAATGACCTTGTTGTTGATATCGAACACCATTTTAATACAATCTCTTTCTTGTTATCATGTTTGAACTCTGTAGAATATGAATAATATGTAACATGTGATCTGGTAAAAGAATCTGCTCTGAGTTTGAAATAAACATTGTTCTTAATTGAGGCCTAAATTTCCATATTTTGCTTCTACGGTTCTAAGGAGATGTTTCCTCAGTATTATTGAATCCAATTTGTTAGTAAGGCATCCTATTGTAACATGTAACAAATGCTTCGAAGAAGACTGATCATCTATATTAACTTGAAATTTATATTCAGTGCTAGTACATTAGAAGATGAGTTGGCTGTGTTCTCATGA

mRNA sequence

ATGGTGAAGTTTCTGAAACCAGGGAAGGCGGTGATCGTGCTGCAAGGGCGTTACGCAGGGCGGAAGGCGGTGATTGTTCGCAACTTCGACGAAGGAAACCGTGAGCGACAATACGGACACTGCCTGGTGGCCGGCATCAACAAGTACCCCAAGAAGGTGATCAGAAAGGACTCAGCCAAGAAGCAGGCCAAGAAATCCCGCGTGAAATGCTTCGTCAAGGTCGTCAATTACAACCACATCATGCCTACTCGATACACTCTTGACGTTGATCTTAAGGATGTCGTCACTACTGATGTATTGACATCCAAGGACAAGAAGGTTACTGCTGCCAAGGAGACTAAGGCCAGGTTTGAGGAGAGGTTCAAGACTGGCAAGAACCGATGGTTCTTCTCTAAACTCAGTGCTAGTACATTAGAAGATGAGTTGGCTGTGTTCTCATGA

Coding sequence (CDS)

ATGGTGAAGTTTCTGAAACCAGGGAAGGCGGTGATCGTGCTGCAAGGGCGTTACGCAGGGCGGAAGGCGGTGATTGTTCGCAACTTCGACGAAGGAAACCGTGAGCGACAATACGGACACTGCCTGGTGGCCGGCATCAACAAGTACCCCAAGAAGGTGATCAGAAAGGACTCAGCCAAGAAGCAGGCCAAGAAATCCCGCGTGAAATGCTTCGTCAAGGTCGTCAATTACAACCACATCATGCCTACTCGATACACTCTTGACGTTGATCTTAAGGATGTCGTCACTACTGATGTATTGACATCCAAGGACAAGAAGGTTACTGCTGCCAAGGAGACTAAGGCCAGGTTTGAGGAGAGGTTCAAGACTGGCAAGAACCGATGGTTCTTCTCTAAACTCAGTGCTAGTACATTAGAAGATGAGTTGGCTGTGTTCTCATGA

Protein sequence

MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAKKQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEERFKTGKNRWFFSKLSASTLEDELAVFS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20284	Spo20284	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20284.1	Spo20284.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20284.1.exon.1	Spo20284.1.exon.1	exon
Spo20284.1.exon.2	Spo20284.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20284.1.CDS.1	Spo20284.1.CDS.1	CDS
Spo20284.1.CDS.2	Spo20284.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo20284.1 vs. NCBI nr
Match: gi|902218211|gb|KNA17970.1| (hypothetical protein SOVF_075000 [Spinacia oleracea])

HSP 1 Score: 262.3 bits (669), Expect = 5.000e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. NCBI nr
Match: gi|902155875|gb|KNA05959.1| (hypothetical protein SOVF_185480 [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 4.200e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTS+DKKVTAAKE KARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSRDKKVTAAKEAKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. NCBI nr
Match: gi|731377251|ref|XP_010667820.1| (PREDICTED: 60S ribosomal protein L27-3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 248.8 bits (634), Expect = 5.700e-63
Identity = 125/133 (93.98%), Postives = 128/133 (96.24%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKD+V+ D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDIVSADALQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. NCBI nr
Match: gi|731371954|ref|XP_010666201.1| (PREDICTED: 60S ribosomal protein L27-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.1 bits (614), Expect = 1.200e-60
Identity = 121/133 (90.98%), Postives = 127/133 (95.49%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNY HIMPTRYTLDVDLKDVV++DVL SKDKKVTAAKETK RFE+R
Sbjct: 61  KQAKKSRVKCFVKVVNYTHIMPTRYTLDVDLKDVVSSDVLQSKDKKVTAAKETKTRFEDR 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. NCBI nr
Match: gi|848885474|ref|XP_012842987.1| (PREDICTED: 60S ribosomal protein L27 [Erythranthe guttata])

HSP 1 Score: 237.3 bits (604), Expect = 1.700e-59
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKP KAVI+LQGRYAGRKAVIVR FD+G R+R YGHCLVAGI KYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGITKYPRKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVK+VNYNHIMPTRYTLDVDLKDVVT D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKLVNYNHIMPTRYTLDVDLKDVVTPDCLQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RER7_SPIOL (60S ribosomal protein L27 OS=Spinacia oleracea GN=SOVF_075000 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 3.500e-67
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFA8_SPIOL (60S ribosomal protein L27 OS=Spinacia oleracea GN=SOVF_185480 PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.000e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTS+DKKVTAAKE KARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSRDKKVTAAKEAKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5D6_BETVU (60S ribosomal protein L27 OS=Beta vulgaris subsp. vulgaris GN=BVRB_012510 PE=3 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 4.000e-63
Identity = 125/133 (93.98%), Postives = 128/133 (96.24%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKD+V+ D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDIVSADALQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DZF1_BETVU (60S ribosomal protein L27 OS=Beta vulgaris subsp. vulgaris GN=BVRB_000570 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 8.300e-61
Identity = 121/133 (90.98%), Postives = 127/133 (95.49%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRYAGRKAVIVRNFDEG R+R YGHCLVAGINKYPKKVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYAGRKAVIVRNFDEGTRDRPYGHCLVAGINKYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVKVVNY HIMPTRYTLDVDLKDVV++DVL SKDKKVTAAKETK RFE+R
Sbjct: 61  KQAKKSRVKCFVKVVNYTHIMPTRYTLDVDLKDVVSSDVLQSKDKKVTAAKETKTRFEDR 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFFSKL
Sbjct: 121 FKTGKNRWFFSKL 133

[Close]

BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Match: A0A022QVH8_ERYGU (60S ribosomal protein L27 OS=Erythranthe guttata GN=MIMGU_mgv1a016082mg PE=3 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-59
Identity = 119/133 (89.47%), Postives = 125/133 (93.98%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKP KAVI+LQGRYAGRKAVIVR FD+G R+R YGHCLVAGI KYP+KVIRKDSAK
Sbjct: 1   MVKFLKPNKAVIILQGRYAGRKAVIVRAFDDGTRDRAYGHCLVAGITKYPRKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           KQAKKSRVKCFVK+VNYNHIMPTRYTLDVDLKDVVT D L SKDKKVTAAKETKARFEER
Sbjct: 61  KQAKKSRVKCFVKLVNYNHIMPTRYTLDVDLKDVVTPDCLQSKDKKVTAAKETKARFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 214.9 bits (546), Expect = 5.700e-55
Identity = 104/133 (78.20%), Postives = 118/133 (88.72%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+GNR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKV A KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 1.700e-54
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRY G+KAVIV++FD+G  E++YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF KV+NY H+MPTRYTLD+DLK+VV+ D ++SKDKKVTA KE KA+FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 213.0 bits (541), Expect = 2.200e-54
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+G  +R+YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKVTA KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 2.900e-54
Identity = 106/133 (79.70%), Postives = 116/133 (87.22%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLKP KAVI+LQGRYAG+KAVIV+ FD+G RE+ YGHCLVAGI K+P KVI+KDSAK
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVK FVK+VNY H+MPTRYTLDVDLKD V  DVL SKDKKVTA KETK   EER
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 2.300e-51
Identity = 106/137 (77.37%), Postives = 117/137 (85.40%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           M KFLKP KAVI+LQG+YAGRKAVIVR FDEG R+R YGHCLVAGI++YPKKVIRKDSAK
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDL----KDVVTTDVLTSKDKKVTAAKETKAR 120
           K  KKSRVK F+K+VNYNHIMPTRYTLD DL    KDVV  DVL ++DKKVT A+ TKAR
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVT-ARRTKAR 120

Query: 121 FEERFKTGKNRWFFSKL 134
             ERFKTGKNRWFF+KL
Sbjct: 121 LAERFKTGKNRWFFTKL 136

[Close]

BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Match: AT4G15000.1 (Ribosomal L27e protein family)

HSP 1 Score: 214.9 bits (546), Expect = 3.200e-56
Identity = 104/133 (78.20%), Postives = 118/133 (88.72%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+GNR+R YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKV A KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Match: AT2G32220.1 (Ribosomal L27e protein family)

HSP 1 Score: 213.4 bits (542), Expect = 9.400e-56
Identity = 102/133 (76.69%), Postives = 120/133 (90.23%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVK +KPGKAVI+LQGRY G+KAVIV++FD+G  E++YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF KV+NY H+MPTRYTLD+DLK+VV+ D ++SKDKKVTA KE KA+FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

[Close]

BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Match: AT3G22230.1 (Ribosomal L27e protein family)

HSP 1 Score: 213.0 bits (541), Expect = 1.200e-55
Identity = 103/133 (77.44%), Postives = 118/133 (88.72%), Query Frame = 1


		  
Query: 1   MVKFLKPGKAVIVLQGRYAGRKAVIVRNFDEGNRERQYGHCLVAGINKYPKKVIRKDSAK 60
           MVKFLK  KAVI+LQGRYAG+KAVI+++FD+G  +R+YGHCLVAG+ KYP KVIRKDSAK
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KQAKKSRVKCFVKVVNYNHIMPTRYTLDVDLKDVVTTDVLTSKDKKVTAAKETKARFEER 120
           K AKKSRVKCF+K+VNY H+MPTRYTLDVDLK+V T D L SKDKKVTA KE KA+ EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFSKL 134
           FKTGKNRWFF+KL
Sbjct: 121 FKTGKNRWFFTKL 133

The following BLAST results are available for this feature:

BLAST of Spo20284.1 vs. NCBI nr
BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
BLAST of Spo20284.1 vs. TAIR (Arabidopsis)

BLAST of Spo20284.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902218211\|gb\|KNA17970.1\|	5.0e-67	100.	hypothetical protein SOVF_0750...	[more]
gi\|902155875\|gb\|KNA05959.1\|	4.2e-66	98.5	hypothetical protein SOVF_1854...	[more]
gi\|731377251\|ref\|XP_010667820.1\|	5.7e-63	93.9	PREDICTED: 60S ribosomal prote...	[more]
gi\|731371954\|ref\|XP_010666201.1\|	1.2e-60	90.9	PREDICTED: 60S ribosomal prote...	[more]
gi\|848885474\|ref\|XP_012842987.1\|	1.7e-59	89.4	PREDICTED: 60S ribosomal prote...	[more]

BLAST of Spo20284.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RER7_SPIOL	3.5e-67	100.	60S ribosomal protein L27 OS=S...	[more]
A0A0K9QFA8_SPIOL	3.0e-66	98.5	60S ribosomal protein L27 OS=S...	[more]
A0A0J8B5D6_BETVU	4.0e-63	93.9	60S ribosomal protein L27 OS=B...	[more]
A0A0J8DZF1_BETVU	8.3e-61	90.9	60S ribosomal protein L27 OS=B...	[more]
A0A022QVH8_ERYGU	1.2e-59	89.4	60S ribosomal protein L27 OS=E...	[more]

BLAST of Spo20284.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL273_ARATH	5.7e-55	78.2	60S ribosomal protein L27-3 OS...	[more]
RL271_ARATH	1.7e-54	76.6	60S ribosomal protein L27-1 OS...	[more]
RL272_ARATH	2.2e-54	77.4	60S ribosomal protein L27-2 OS...	[more]
RL27_PEA	2.9e-54	79.7	60S ribosomal protein L27 OS=P...	[more]
RL27_SOLTU	2.3e-51	77.3	60S ribosomal protein L27 OS=S...	[more]

BLAST of Spo20284.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT4G15000.1	3.2e-56	78.2	Ribosomal L27e protein family	[more]
AT2G32220.1	9.4e-56	76.6	Ribosomal L27e protein family	[more]
AT3G22230.1	1.2e-55	77.4	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001141	Ribosomal protein L27e	PRODOM	PD009396		coord: 60..133 score: 5.0
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 2..135 score: 5.9
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..133 score: 8.3
IPR005824	KOW	PFAM	PF00467	KOW	coord: 7..34 score: 2.
IPR005824	KOW	SMART	SM00739	kow_9	coord: 4..31 score: 0.
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 2..133 score: 3.76
IPR014722	Ribosomal protein L2 domain 2	GENE3D	2.30.30.30		coord: 3..112 score: 6.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome