Spo20387.1 (mRNA) | SpinachBase

Overview


Name	Spo20387.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Sec-independent protein translocase protein TATA, chloroplastic (Protein THYLAKOID ASSEMBLY 4) (Protein TWIN-ARGININE TRANSLOCATION A) (Precursor)
Location	SpoScf_01169 : 74086 .. 79998 (-)
Sequence length	1151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATATTTCGAGATAGCAAGTCAAACACTTCCTAAAACAAGAAAAGAAGCCATAAACTCCATAGACTCTTATCCATCATCATCGTATTTTTTACTAGACCTCAAAAACTCACCAAAACCTTCTCAAAAATGGAGATCTTAACGCTCTCAGCTACTCTTTCTCTCTCCTCCTCCCAAAACCCCACACACCTTTCTTCCTCTAAATCCTCCTTATTCCTCAATCACACCACCACCACCGCGTTCTTCAGATCCGTCAACACAACGGGCCTGGGCTTGAGTGCCCGAACCCGTCCTACTAACCGAACTCGGAGGGGGTTCTGTTGCAACTCGTTGTTTGGGCTTGGTGTTCCGGAGCTCGCGGTCATCGCCGGTGTTGCGGCTCTTGTGTTTGGCCCCAAACAGTTACCGGAAATTGGCCGGAATTTCGGCAAAACCATCAAAAGTTTTCAACAGGTTAGTCAACCACATTTCAACTTGTTTTTTTTAATTTTTTTTTTTCTAAAGTATTTTATTCTTCAATTCTAAGGTAGCTGATAATTTTTCAATCTATTGTTTTATTGTTTATGATGTGTTTTTGAAGTGACTTCTGGAAATTGTCTAATTGATGAATGAGATGAATTAATATTTAATAGTGTCCAAATTGATGACCCGAATTTGATGTGAGCTAAAGTTTGGATGCGGAATGTGGTATGTTACCGAAAACCGAAATCAGTTCTATTATGATGGAGTTGTTTGAGGTATTTAGGAATGTTTGGGTAGAGGTAGGATATTGGTGCTTGAACTGCTTGGTTAATCAGTTTTGTAATATTGCTATGATAGGTGTCTATGTGTCAATCATTGTAGGAAGAATTAGAAAAATTAGAGACAGAGAAAGCAGCATTCTTGAAGCTAGTTGGTACAAAATTAATGGTACTGGTGTTGTGGGAATAATTAGAAATTAGAGATAGAGAAGGCATTGTAATCCTTGGTTGCCGAATTAATGGTACGTTTACTTGAATCAGTAATATGACAATTAAATACAGACGTAGGGAGGGAGCATTTGAATTTCTGTTTAGTTAGAGAAATCTGTCTTCTTTTAATTTATTTCTGGAGGTTGAGAAACTTGTATACACTAGGGCACAACCTCTCTTATTGTATTCGCAAGTCCATACATATTATGGGGAAGGGATCCGAAGTTGATCCGTGTTGAAGCCCTATATCAATAGAGCTTTTGCTTGATATGTCCACATGTCATTCTCATTCTACTCTTGGCACTGTTAACTCAAATACATGCAGTTGGAAATTTGGAATGCCCTTGGCCACTAGACACCTTCACATTTTTCTTGGTCCATTGTCATAAAACCATGTACATTTGTTTATCCTTGTTCTTTCATTAAAAGCATCTTAAGAAATGTATGACTTCCATATACGATATACCTTGCATCAATTAAATCTACTTGTAGATGTGTTTATACCTATTGTACTTCTGTTATGCTTCTTCAGAAATGTATGGCTTCCATATAGGATCTACCTTTCATGAAACCAGATCTTAGTTTTAAAAAGCGCGAAGCGCAACGAAGCGCAAAAGGGCCCGGGAGCTTAAGCGCAAAGCGAAAGTGCACGCTTTTCGTAGGCGAAGCGCACTCGGAAAGAAATAATAAAATTTCAAAACTTCGGAAATCATGGAGAAAATATGGAAAGAAAAGATGAAAAAAAAAAAATCGAAAAGATGAAAGAAAAATTCAGAATTGACTGGAGAAATCCAACGAGAAGGCTAGAGAAATCTGGCTACGGGAGAAAATTGCACTAGAGTTTTCAAAACCCCCCAAACATTCTCTTTTTAAAAAAAAGAAATCATGTGATACTTTAAAAAAGAAGATTAGAGTTACTTGGCTTTATTTTTTAATTAAAAAGAAGAGTTTGTTGTGCCCAGACTACAGGAAGCGCAGCTTTGCGCTGCTTCCTGTATGTCGCTAAGCTTCTGCTGCCAGAAACGTTCTTTTGTGAGCTTCCGAGCTTCCAGGACTTTAAGCGCGCTTTTTAAAACTAAGAACCAGATACCCCTTATCTTTCTCTTCTCTAATTCTTCGCCGTTCTTTTGGATAATTTTTTTGGTTTATCCCCCAACAGTTTTTAGTATTAGAAAGAGGCTCGAGAACTTATAGGGAATCATTGGTGGTATGAACATGAGAGATAAAAGGGAACTCTACAGTTTTCTAATGTTGCAAAAGTAGAAAAGGTTACGGACTAAGAAAATTATTCTTGGTAACGAGGCAAAGGAAACAGTTGTAAAAGCTTGAAAGAGAGCGTAGTAGTAGACCAAAAAGGATAAAAGAACTTATATAGGGTGCAAAGGGCTAGGGAGTGAAAATCAAGGAACTTTGATAAAGTAAAGTTGTATAAAAAATGAAGTAGGAAGATTCTTGTGGATGAGCCATTGAGGTCAACTATCAAAGAAAAGTAAAAAGATGTACTTTTATTAGCTTTCCGATGGATCAGGGAGAGAAACATTTGCTTGGAAGAGCTCAATGAATCTGGAACTACAGTTTTTTCCCTTATACTACGAGGAAAGAAGTCAAAGAAGGTGAAGTTAAACAAAGTGGGACGTCAGTAGGATCTAATGATAGACCCATAGAAATATTAGGTGAAGAAGGCATTACATGGCCAACAAAGCTTTAAAATATTATTTTAGGGTTGACATTATACGTCGGCTTTACGTTATAATTCCTTCATACAAGATTAAGAGGGGAGTTCAAAGTGGTTGCAGGCTAGCAGCTATAAGGGTTATGAAGTTACTCAACCATATGAGAAAATAACCTGGATCCGGACATGTTAGTTAAGAAATTGTAGCCTTGGGAAACATTTCTGTGTATTGAGAGTGTAAACATCTCATGGGGGATTAGTTAAAAACTGGGAACAAAATTATAGTATAGGGATATCCGGACATGGCTGAACTAGTCTAGTGTGTGTCAAGATAAATATGTGTTGGATCGGTGAAAAGGGGGAAAACTGCTACAGTCTTCTCAAAGTGTGGGGCGTTCCGCATTCATGACACAGATTAGATCAAGACCCATGATCTTTTGGCTTATTTAAGTTGGCAATATCTTGGGCTCACTTAAAGTCTAAAATTCTGGAAGAAAACCCTATTTTAGTGATCGAGAATATTGTCGATAGTGTAAGTTTTCATCATATAAGATCTATAATATTTAAGATTCAGAAGTAGGTATTCTTGGACTTCATTCTTTCACAAATGAAAAGAAAAGCAGCTTTTCATGCAGTATTAACACCAACTGGAGGGTTTTTTTTTGAGAGCGATGAATCAGGTGATTAGGAAGAATGCGGGAGTTACAATGATTGAGAACTAGATGAAGGAGAATCGACTAAGGTGGTTTGGCAATGGAAGACGAAAGTCAAATGATGCGCTGGTTAGAACGATTGAAGAGTAGCAAATGGATGGAATTGTGAGGGGTAGGGGAAGACCAAAGCAAAAATGGAAGAGGGTGATTGAGAGTGATATGAGTTCATTGGGGATTGAGGAAAATATGGCGTTAGATAGGGCGGGGTGGAAGGAGATAATACATGCCGATGACTCAACATGACTTCTTTTCCATCTCTTGCTCTTTTTCTATTTTAATTGAAAACTTCTCTCTTTTTCTTATTTTTTTCAAAACATTTTTAGCCTCTTCTTTAAACCGTCCTATCCTATTTTGCAAAGATTGACTTCCAACTGCTTATTCCATGAGAATGCATCTTGTGCTCCGGCAACCCAATCTTCCTTATCATACCTCTATATCTACCTTGGCTTGAAGTTCCCATTTTTGGTATGGATAAGACCTAACTGAAACCCTTTTGTTTCTCTTTGCTACCCTTTGGAAGTCGCTTTTCTGTCCTCTCAAATTTGTGTGCGACACTGGTCGGAATAGTGAACAAGGACTTGAAATGCCTGCACTATGCTAGTTAAAGTATTCCCTTTTAGTAATAGCTTATTTTCATCTTGAAAGCCACTTTTTAAATCCCTTTAGTCCTATATTGTCAGATACCTGATCAATTTGTCACTAAGTAGGCATTAAGAGTAAGATGAAAAGGTTATCACATTCTAACTAGGAATCAAATCTTCCTAACTGTGTCTTGATATGACGTATTTAAATACATACTAGCTTCATTTGTTTCTTTAAGCGTGAGTAGCTATTGTGATTGGATAAAGATATAAATTTTCCTGTTCTCTTTCTTTTTCGCTAAAGGGCACTTAGCCTTTGCACTAGTTCAGGCATTGGTGGGTCTTGGCACAAGGACCCTTTGCAAGGTTGTTTCCTGTCTTGGTCCTTAAACCCAGCTGATTACTGCCTCCAGTTGAAGCAAAGAAAATTTATTTTTTGAGTCTGCATTTGGTATTACAGCTCAATGGTTCCAGGCCATCACCAGATTAGAATTAAGCATTGGGCAAATAGCAGTCGCACCATCTTTGTCCAAAATCTGTAAAAATGATAATTTTGAGGTTGTTTAACCTTATCCAGAATCTGTTCAAGGTATGTGAAACTGGGAAACTGATTTGTATGCTCAGGTATACTCCGTAAGATACAAGTATAATTTACTGGTTTTTGCGAGTTGGAATAAGGGGATGTGAATATAACTCTTTATTGTTGTTGTTAGGTCTGTGGCTTAATTTGAAGTTTGTTTTATTTGCATACTAAGCAGTCATTTATTGTTTAAGGACCTTCTCCTTGGTTACACGGTTATACCTTTACAAAATTGCTATTTTTTTTATTTCAATGATTCTAACATCCATATGTTAATTGGCTTCCTTTCCATTCGCAAGAATTTACTATTTTCATCTCATGCTTTGATTTGACATGCTAGGATGCTTAGCTTGAAACTTCCACCTTTTTGTTTCTTTTCCGTTGACTTGACAGATGTTAGGGAGGTAGTCTATGCAAATACGCCGGAGTTCACTGTGTATTGATTTTGATCATTTGGTGTCTGCCTTGTTGGTTTCTTGTATTTTTTTGTACGTCTAACAAAAGCTAATGAATATCAGTTACCAATTTGAAAGGGTTCTTGCTTCTTGCCTTTTCTTTCTTTCTCCCCCTTTTTTCGTATGAGGTGTTTTTTATGCTATGGTGCCAACAATTGCTGAGTTGATAGGATGAATTGTTCTTCATTTTGTTCATTGTGCATGTTAAGAGTTTCTGAACCCTGATCACTTTTAAGTCCTCTGTTCACATACAAAATATTACAGGCCGCAAAGGAGTTCGAACAGGAACTTACAAAACCAGAAGACTCTGAGTCTTCTGACAAGGTGATTGAGGCAAAATCAGCATCAGAAAGTTCAGAAGAAAAAGAAAATGTTGCATCGTCGTCTAAAGAGAGTTCTTGAGATTATTCATGTATTTTTTCTTCCACTTCATTTAATCCGAATTTTTTTCTTGTATTCGTGACGGCCAATGTGATGGTATGTATAATCGAATACTTGTGTAAGAGTTCCGTTCATATCAAGCGCAATTTAGCAAATTAGCAATTAGGCATTAACAGTATTAGAAGAATTTATTTTTGAAGAAGATGGTATATCGACATGCCGTCAAGTCAACAATAAAGATGTGTTAAACCACTTCGTATGTTTATGGATGTGTTCACAAGTCTCGGAGTAGGTGTGCAAATGTGCCACCTTTAAACCAAATGCATAAATCAAGATTAATAACAGGTCGGAGACACTAGTTCCGGCAATTACCCTATCCATCCAGAACTAACCGGGTATATTTTTTTTGGGACATAAGGCAGAACTAACTGTTACACTATCCTAACCTTTCATAATCAAAGTTGACTACATCACTTTATTTTAAACAAAATATAAAAAGGCCAGGTGTATGGAGTAGGATCAGAAATTCATAATATATTTCCTCTGTTCTTTTTACTTGTACCATGTAGGTTGGATACAAATAT

mRNA sequence

ATATTTCGAGATAGCAAGTCAAACACTTCCTAAAACAAGAAAAGAAGCCATAAACTCCATAGACTCTTATCCATCATCATCGTATTTTTTACTAGACCTCAAAAACTCACCAAAACCTTCTCAAAAATGGAGATCTTAACGCTCTCAGCTACTCTTTCTCTCTCCTCCTCCCAAAACCCCACACACCTTTCTTCCTCTAAATCCTCCTTATTCCTCAATCACACCACCACCACCGCGTTCTTCAGATCCGTCAACACAACGGGCCTGGGCTTGAGTGCCCGAACCCGTCCTACTAACCGAACTCGGAGGGGGTTCTGTTGCAACTCGTTGTTTGGGCTTGGTGTTCCGGAGCTCGCGGTCATCGCCGGTGTTGCGGCTCTTGTGTTTGGCCCCAAACAGTTACCGGAAATTGGCCGGAATTTCGGCAAAACCATCAAAAGTTTTCAACAGGCCGCAAAGGAGTTCGAACAGGAACTTACAAAACCAGAAGACTCTGAGTCTTCTGACAAGGTGATTGAGGCAAAATCAGCATCAGAAAGTTCAGAAGAAAAAGAAAATGTTGCATCGTCGTCTAAAGAGAGTTCTTGAGATTATTCATGTATTTTTTCTTCCACTTCATTTAATCCGAATTTTTTTCTTGTATTCGTGACGGCCAATGTGATGGTATGTATAATCGAATACTTGTGTAAGAGTTCCGTTCATATCAAGCGCAATTTAGCAAATTAGCAATTAGGCATTAACAGTATTAGAAGAATTTATTTTTGAAGAAGATGGTATATCGACATGCCGTCAAGTCAACAATAAAGATGTGTTAAACCACTTCGTATGTTTATGGATGTGTTCACAAGTCTCGGAGTAGGTGTGCAAATGTGCCACCTTTAAACCAAATGCATAAATCAAGATTAATAACAGGTCGGAGACACTAGTTCCGGCAATTACCCTATCCATCCAGAACTAACCGGGTATATTTTTTTTGGGACATAAGGCAGAACTAACTGTTACACTATCCTAACCTTTCATAATCAAAGTTGACTACATCACTTTATTTTAAACAAAATATAAAAAGGCCAGGTGTATGGAGTAGGATCAGAAATTCATAATATATTTCCTCTGTTCTTTTTACTTGTACCATGTAGGTTGGATACAAATAT

Coding sequence (CDS)

ATGGAGATCTTAACGCTCTCAGCTACTCTTTCTCTCTCCTCCTCCCAAAACCCCACACACCTTTCTTCCTCTAAATCCTCCTTATTCCTCAATCACACCACCACCACCGCGTTCTTCAGATCCGTCAACACAACGGGCCTGGGCTTGAGTGCCCGAACCCGTCCTACTAACCGAACTCGGAGGGGGTTCTGTTGCAACTCGTTGTTTGGGCTTGGTGTTCCGGAGCTCGCGGTCATCGCCGGTGTTGCGGCTCTTGTGTTTGGCCCCAAACAGTTACCGGAAATTGGCCGGAATTTCGGCAAAACCATCAAAAGTTTTCAACAGGCCGCAAAGGAGTTCGAACAGGAACTTACAAAACCAGAAGACTCTGAGTCTTCTGACAAGGTGATTGAGGCAAAATCAGCATCAGAAAGTTCAGAAGAAAAAGAAAATGTTGCATCGTCGTCTAAAGAGAGTTCTTGA

Protein sequence

MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPEDSESSDKVIEAKSASESSEEKENVASSSKESS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20387	Spo20387	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20387.1	Spo20387.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20387.1.utr5p.1	Spo20387.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20387.1.CDS.2	Spo20387.1.CDS.2	CDS
Spo20387.1.CDS.1	Spo20387.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20387.1.utr3p.1	Spo20387.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20387.1.exon.2	Spo20387.1.exon.2	exon
Spo20387.1.exon.1	Spo20387.1.exon.1	exon

Homology

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BLAST of Spo20387.1 vs. NCBI nr
Match: gi|902234235|gb|KNA23378.1| (hypothetical protein SOVF_024920 [Spinacia oleracea])

HSP 1 Score: 271.6 bits (693), Expect = 8.700e-70
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


		  
Query: 1   MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR 60
           MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR
Sbjct: 1   MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR 60

Query: 61  RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120
           RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP
Sbjct: 61  RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120

Query: 121 EDSESSDKVIEAKSASESSEEKENVASSSKESS 154
           EDSESSDKVIEAKSASESSEEKENVASSSKESS
Sbjct: 121 EDSESSDKVIEAKSASESSEEKENVASSSKESS 153

[Close]

BLAST of Spo20387.1 vs. NCBI nr
Match: gi|731328033|ref|XP_010674831.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 200.3 bits (508), Expect = 2.500e-48
Identity = 122/153 (79.74%), Postives = 127/153 (83.01%), Query Frame = 1


		  
Query: 1   MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR 60
           MEI TLS +LSL S Q PT LSSSKSS   +     + FRSVNT GLGL AR RP  R R
Sbjct: 1   MEISTLSPSLSLPSFQKPTLLSSSKSSSLFS----ISLFRSVNTKGLGLRARVRPAYRAR 60

Query: 61  RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120
           +G  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP
Sbjct: 61  KGLTCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120

Query: 121 EDSESSDKVIEAKSASESSEEKENVASSSKESS 154
           E+ ESSD VIEAKSASESSEEKENV SSSKESS
Sbjct: 121 EEPESSDNVIEAKSASESSEEKENVVSSSKESS 149

[Close]

BLAST of Spo20387.1 vs. NCBI nr
Match: gi|1009117521|ref|XP_015875362.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 112.1 bits (279), Expect = 8.800e-22
Identity = 75/147 (51.02%), Postives = 94/147 (63.95%), Query Frame = 1


		  
Query: 7   SATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRP-TNRTRRGFCC 66
           S TLS+        LSSS+SS   N+ T T+              RTRP T R ++G  C
Sbjct: 5   SITLSIPRPPPYLPLSSSQSSFLTNNVTCTSLLNRNKAINGAFQIRTRPRTQRAKKGLTC 64

Query: 67  NSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPEDSES 126
           N+LFGLGVPEL VIAGVAALVFGPK+LPE+G++ GKT+KSFQQAAKEFE EL K  D  S
Sbjct: 65  NALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVKSFQQAAKEFESELKKEPD--S 124

Query: 127 SDKVIEAKSASESSEEKENVASSSKES 153
            +  ++  +A    E+++   SSSKES
Sbjct: 125 IEPPVDKPTAVSEEEKQDVKVSSSKES 149

[Close]

BLAST of Spo20387.1 vs. NCBI nr
Match: gi|922561626|ref|XP_013609121.1| (PREDICTED: sec-independent protein translocase protein TATA, chloroplastic-like [Brassica oleracea var. oleracea])

HSP 1 Score: 110.9 bits (276), Expect = 2.000e-21
Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 1


		  
Query: 6   LSATLSLSSSQNPTHL--SSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGF 65
           ++ +++  SS  P  L  SSS+SSLF N  T T   ++ +     L AR RP  R R+  
Sbjct: 1   MATSVATLSSPPPVSLPLSSSRSSLFSNCFTVTTRPKTRS-----LVARIRPEQR-RKAL 60

Query: 66  CCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQEL-TKPED 125
            CN+LFGLGVPELAVIAGVAAL+FGPK+LPEIG++ GKT+KSFQQAAKEFE EL T+PED
Sbjct: 61  TCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPED 120

Query: 126 SESSDKVIEAKSASESSEEKENVASSSKES 153
           S +    +   + S  +EEK  V SSSKE+
Sbjct: 121 SVAGSSPV---AMSNKAEEKTEVLSSSKEN 141

[Close]

BLAST of Spo20387.1 vs. NCBI nr
Match: gi|15241912|ref|NP_198227.1| (sec-independent protein translocase protein TatA [Arabidopsis thaliana])

HSP 1 Score: 108.6 bits (270), Expect = 9.700e-21
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1


		  
Query: 5   TLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGFC 64
           T  ATLS     +   LSSS+SS F N  T T    + +   +G   R  PT   R+   
Sbjct: 3   TSVATLSSPPPVSLPLLSSSRSSFFSNCFTVTTRPNTRSLVAIGRRIRQEPT---RKPLT 62

Query: 65  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQEL-TKPEDS 124
           CN+LFGLGVPELAVIAGVAAL+FGPK+LPEIG++ GKT+KSFQQAAKEFE EL T+PE+S
Sbjct: 63  CNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEES 122

Query: 125 ESSDKVIEAKSASESSEEKENVASSSKES 153
            +    +   +  E  E+K  V+SSSKE+
Sbjct: 123 VAESSQVATSNKEE--EKKTEVSSSSKEN 146

[Close]

BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RV82_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024920 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 6.000e-70
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 1


		  
Query: 1   MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR 60
           MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR
Sbjct: 1   MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR 60

Query: 61  RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120
           RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP
Sbjct: 61  RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120

Query: 121 EDSESSDKVIEAKSASESSEEKENVASSSKESS 154
           EDSESSDKVIEAKSASESSEEKENVASSSKESS
Sbjct: 121 EDSESSDKVIEAKSASESSEEKENVASSSKESS 153

[Close]

BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNI1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g081850 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.700e-48
Identity = 122/153 (79.74%), Postives = 127/153 (83.01%), Query Frame = 1


		  
Query: 1   MEILTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTR 60
           MEI TLS +LSL S Q PT LSSSKSS   +     + FRSVNT GLGL AR RP  R R
Sbjct: 1   MEISTLSPSLSLPSFQKPTLLSSSKSSSLFS----ISLFRSVNTKGLGLRARVRPAYRAR 60

Query: 61  RGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120
           +G  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP
Sbjct: 61  KGLTCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKP 120

Query: 121 EDSESSDKVIEAKSASESSEEKENVASSSKESS 154
           E+ ESSD VIEAKSASESSEEKENV SSSKESS
Sbjct: 121 EEPESSDNVIEAKSASESSEEKENVVSSSKESS 149

[Close]

BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A0D3E0Z8_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.400e-21
Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 1


		  
Query: 6   LSATLSLSSSQNPTHL--SSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGF 65
           ++ +++  SS  P  L  SSS+SSLF N  T T   ++ +     L AR RP  R R+  
Sbjct: 1   MATSVATLSSPPPVSLPLSSSRSSLFSNCFTVTTRPKTRS-----LVARIRPEQR-RKAL 60

Query: 66  CCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQEL-TKPED 125
            CN+LFGLGVPELAVIAGVAAL+FGPK+LPEIG++ GKT+KSFQQAAKEFE EL T+PED
Sbjct: 61  TCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPED 120

Query: 126 SESSDKVIEAKSASESSEEKENVASSSKES 153
           S +    +   + S  +EEK  V SSSKE+
Sbjct: 121 SVAGSSPV---AMSNKAEEKTEVLSSSKEN 141

[Close]

BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: A0A078EL12_BRANA (BnaC09g02780D protein OS=Brassica napus GN=BnaC09g02780D PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.400e-21
Identity = 81/150 (54.00%), Postives = 103/150 (68.67%), Query Frame = 1


		  
Query: 6   LSATLSLSSSQNPTHL--SSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGF 65
           ++ +++  SS  P  L  SSS+SSLF N  T T   ++ +     L AR RP  R R+  
Sbjct: 1   MATSVATLSSPPPVSLPLSSSRSSLFSNCFTVTTRPKTRS-----LVARIRPEQR-RKAL 60

Query: 66  CCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQEL-TKPED 125
            CN+LFGLGVPELAVIAGVAAL+FGPK+LPEIG++ GKT+KSFQQAAKEFE EL T+PED
Sbjct: 61  TCNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPED 120

Query: 126 SESSDKVIEAKSASESSEEKENVASSSKES 153
           S +    +   + S  +EEK  V SSSKE+
Sbjct: 121 SVAGSSPV---AMSNKAEEKTEVLSSSKEN 141

[Close]

BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Match: B9I5F5_POPTR (Thylakoid assembly family protein OS=Populus trichocarpa GN=POPTR_0013s03820g PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.800e-21
Identity = 77/148 (52.03%), Postives = 95/148 (64.19%), Query Frame = 1


		  
Query: 7   SATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNT-TGLGLSARTRPTNRTRRGFCC 66
           S TLSL         SSS S+ F     TTAFF    +   L L   T  + R ++G  C
Sbjct: 7   SVTLSLPKPPRSLPFSSSNSTFF----NTTAFFNKTKSCNSLVLGKTTSGSQRAKKGLTC 66

Query: 67  NSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPEDSES 126
           N+LFGLGVPEL VIAGVAALVFGPK+LPE+G++ GKT++SFQQAAKEFE EL K  +SE 
Sbjct: 67  NALFGLGVPELVVIAGVAALVFGPKKLPEVGKSIGKTVRSFQQAAKEFESELKKEPESEP 126

Query: 127 SDKVIEAKSASESSEEKENV-ASSSKES 153
                + K+  E  E+K++V  SSSKES
Sbjct: 127 ETPGEQPKAIIE--EKKQDVEVSSSKES 148

[Close]

BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_ARATH (Sec-independent protein translocase protein TATA, chloroplastic OS=Arabidopsis thaliana GN=TATA PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.100e-23
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1


		  
Query: 5   TLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGFC 64
           T  ATLS     +   LSSS+SS F N  T T    + +   +G   R  PT   R+   
Sbjct: 3   TSVATLSSPPPVSLPLLSSSRSSFFSNCFTVTTRPNTRSLVAIGRRIRQEPT---RKPLT 62

Query: 65  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQEL-TKPEDS 124
           CN+LFGLGVPELAVIAGVAAL+FGPK+LPEIG++ GKT+KSFQQAAKEFE EL T+PE+S
Sbjct: 63  CNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEES 122

Query: 125 ESSDKVIEAKSASESSEEKENVASSSKES 153
            +    +   +  E  E+K  V+SSSKE+
Sbjct: 123 VAESSQVATSNKEE--EKKTEVSSSSKEN 146

[Close]

BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_ORYSJ (Sec-independent protein translocase protein TATA, chloroplastic OS=Oryza sativa subsp. japonica GN=TATA PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.100e-19
Identity = 66/112 (58.93%), Postives = 76/112 (67.86%), Query Frame = 1


		  
Query: 47  LGLSARTRPTN----RTRRGFCCNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKT 106
           + ++ARTR  +    R      C  LFGLGVPEL VIAGVAALVFGPKQLPEIGR+ GKT
Sbjct: 59  VAVAARTRAGSGAGSRGGGAMGCKCLFGLGVPELVVIAGVAALVFGPKQLPEIGRSIGKT 118

Query: 107 IKSFQQAAKEFEQELTKPEDSESSDKVIEAKSA-SESSEEKENVASSSKESS 154
           +KSFQQAAKEFE EL K  D          ++A S+  EEKE  ASSSKES+
Sbjct: 119 VKSFQQAAKEFETELKKESDDGGDQPPPPTETAVSDGGEEKELEASSSKEST 170

[Close]

BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_PEA (Sec-independent protein translocase protein TATA, chloroplastic OS=Pisum sativum GN=TATA PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.400e-19
Identity = 72/148 (48.65%), Postives = 93/148 (62.84%), Query Frame = 1


		  
Query: 6   LSATLSLSSSQN-PTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGFC 65
           +  TLS+SSS   PT L +S  S + N     +F  S + T   L  + R   RT +GF 
Sbjct: 1   MEITLSISSSSVIPTRLPNS--SCYSN----LSFLSSNSNTSSLLLKKARIKTRTTKGFT 60

Query: 66  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPEDSE 125
           CN+ FGLGVPEL VIAGVAALVFGPK+LPE+GR+ G+T+KSFQQAAKEFE EL K  +  
Sbjct: 61  CNAFFGLGVPELVVIAGVAALVFGPKKLPEVGRSIGQTVKSFQQAAKEFETELKKEPNP- 120

Query: 126 SSDKVIEAKSASESSEEKENVASSSKES 153
                 E  S +   E++E   SS+K++
Sbjct: 121 -----TEEISVASEQEKQEIKVSSTKDN 136

[Close]

BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_MAIZE (Sec-independent protein translocase protein TATA, chloroplastic OS=Zea mays GN=TATA PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.300e-19
Identity = 63/90 (70.00%), Postives = 68/90 (75.56%), Query Frame = 1


		  
Query: 65  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPEDSE 124
           C  LFGLGVPELAVIAGVAALVFGPKQLPEIGR+ GKT+KSFQQAAKEFE EL K E  E
Sbjct: 82  CKCLFGLGVPELAVIAGVAALVFGPKQLPEIGRSIGKTVKSFQQAAKEFETEL-KKEPGE 141

Query: 125 SSDKVIEA-KSASESSEEKENVASSSKESS 154
             D+   A  +A    EEK   ASSSKES+
Sbjct: 142 GGDQPPPATPTAVSGGEEKGLEASSSKESA 170

[Close]

BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Match: TATA_SYNP6 (Sec-independent protein translocase protein TatA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tatA PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.300e-11
Identity = 30/56 (53.57%), Postives = 43/56 (76.79%), Query Frame = 1


		  
Query: 67  SLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQELTKPED 123
           + FG+G+PE+ VI  +A LVFGPK+LPEIGR+ GK ++ FQ A++EFE E+ +  D
Sbjct: 2   NFFGIGLPEMLVILAIALLVFGPKKLPEIGRSLGKALRGFQDASREFESEIKREID 57

[Close]

BLAST of Spo20387.1 vs. TAIR (Arabidopsis)
Match: AT5G28750.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 108.6 bits (270), Expect = 3.400e-24
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1


		  
Query: 5   TLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGFC 64
           T  ATLS     +   LSSS+SS F N  T T    + +   +G   R  PT   R+   
Sbjct: 3   TSVATLSSPPPVSLPLLSSSRSSFFSNCFTVTTRPNTRSLVAIGRRIRQEPT---RKPLT 62

Query: 65  CNSLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFEQEL-TKPEDS 124
           CN+LFGLGVPELAVIAGVAAL+FGPK+LPEIG++ GKT+KSFQQAAKEFE EL T+PE+S
Sbjct: 63  CNALFGLGVPELAVIAGVAALLFGPKKLPEIGKSIGKTVKSFQQAAKEFESELKTEPEES 122

Query: 125 ESSDKVIEAKSASESSEEKENVASSSKES 153
            +    +   +  E  E+K  V+SSSKE+
Sbjct: 123 VAESSQVATSNKEE--EKKTEVSSSSKEN 146

[Close]

BLAST of Spo20387.1 vs. TAIR (Arabidopsis)
Match: AT5G52440.1 (Bacterial sec-independent translocation protein mttA/Hcf106)

HSP 1 Score: 53.9 bits (128), Expect = 1.000e-7
Identity = 39/116 (33.62%), Postives = 59/116 (50.86%), Query Frame = 1


		  
Query: 4   LTLSATLSLSSSQNPTHLSSSKSSLFLNHTTTTAFFRSVNTTGLGLSARTRPTNRTRRGF 63
           +T S   S    Q+    S    S + +   ++ F   +    LG+S   + +N  ++  
Sbjct: 17  ITKSHLFSYPPLQSRYKASKPNLSSWFSLLGSSRFSPYIGLKHLGISISPKSSNPEKKRR 76

Query: 64  CCN-----SLFGLGVPELAVIAGVAALVFGPKQLPEIGRNFGKTIKSFQQAAKEFE 115
           C +     SLFG+G PE  VI  VA LVFGPK L E+ RN GKT+++FQ   +E +
Sbjct: 77  CKSMMIRASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIRELQ 132

The following BLAST results are available for this feature:

BLAST of Spo20387.1 vs. NCBI nr
BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
BLAST of Spo20387.1 vs. TAIR (Arabidopsis)

BLAST of Spo20387.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902234235\|gb\|KNA23378.1\|	8.7e-70	100.	hypothetical protein SOVF_0249...	[more]
gi\|731328033\|ref\|XP_010674831.1\|	2.5e-48	79.7	PREDICTED: sec-independent pro...	[more]
gi\|1009117521\|ref\|XP_015875362.1\|	8.8e-22	51.0	PREDICTED: sec-independent pro...	[more]
gi\|922561626\|ref\|XP_013609121.1\|	2.0e-21	54.0	PREDICTED: sec-independent pro...	[more]
gi\|15241912\|ref\|NP_198227.1\|	9.7e-21	52.3	sec-independent protein transl...	[more]

BLAST of Spo20387.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RV82_SPIOL	6.0e-70	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CNI1_BETVU	1.7e-48	79.7	Uncharacterized protein OS=Bet...	[more]
A0A0D3E0Z8_BRAOL	1.4e-21	54.0	Uncharacterized protein OS=Bra...	[more]
A0A078EL12_BRANA	1.4e-21	54.0	BnaC09g02780D protein OS=Brass...	[more]
B9I5F5_POPTR	8.8e-21	52.0	Thylakoid assembly family prot...	[more]

BLAST of Spo20387.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
TATA_ARATH	6.1e-23	52.3	Sec-independent protein transl...	[more]
TATA_ORYSJ	1.1e-19	58.9	Sec-independent protein transl...	[more]
TATA_PEA	1.4e-19	48.6	Sec-independent protein transl...	[more]
TATA_MAIZE	5.3e-19	70.0	Sec-independent protein transl...	[more]
TATA_SYNP6	5.3e-11	53.5	Sec-independent protein transl...	[more]

BLAST of Spo20387.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G28750.1	3.4e-24	52.3	Bacterial sec-independent tran...	[more]
AT5G52440.1	1.0e-7	33.6	Bacterial sec-independent tran...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003369	Sec-independent protein translocase protein TatA/B/E	PFAM	PF02416	MttA_Hcf106	coord: 71..121 score: 1.9
IPR006312	Sec-independent protein translocase protein TatA/E	HAMAP	MF_00236	TatA_E	coord: 68..148 score: 17
IPR006312	Sec-independent protein translocase protein TatA/E	TIGRFAMs	TIGR01411	TIGR01411	coord: 70..116 score: 1.8
None	No IPR available	PANTHER	PTHR33162	FAMILY NOT NAMED	coord: 1..153 score: 8.3
None	No IPR available	PANTHER	PTHR33162:SF1	SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC	coord: 1..153 score: 8.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009306	protein secretion
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0008565	protein transporter activity