Spo20393.1 (mRNA) | SpinachBase

Overview


Name	Spo20393.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 59903562 .. 59903963 (+)
Sequence length	402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTAATAATAGTAGTAGAAGAAGATCATTAGGGTGGGTGATCGCAGTGCCTTGCACGAGCCGAAATGCTTTAAGAACCGATTCTCAAAAGGGCATTGGAGAAATTCTCAACACCAAATTATCAACCATAATTGAAGAGCCTGAAAATTTGTATGAAGGTAATAATAATGTAAATAGTCCAAGGAATATTAATACCAAGATTAGCAGAAATATTAGTAGCATGAAGTTATGGCTTAAAGAGAAGAAAGGAAAAGATCGCGTTCTTTCAACAAACTTGTTTAAGAGAAGTAAGCTTCATGTTGTTTCTCGTAATCTTTGTTGTGTTAAGGCTTCTTACATCAATTTTCTTTCTGGTTTTGTTACTAAAGGTAGCTTCACTGGACTTCCTCTTTGTTATTAG

mRNA sequence

ATGACTAATAATAGTAGTAGAAGAAGATCATTAGGGTGGGTGATCGCAGTGCCTTGCACGAGCCGAAATGCTTTAAGAACCGATTCTCAAAAGGGCATTGGAGAAATTCTCAACACCAAATTATCAACCATAATTGAAGAGCCTGAAAATTTGTATGAAGGTAATAATAATGTAAATAGTCCAAGGAATATTAATACCAAGATTAGCAGAAATATTAGTAGCATGAAGTTATGGCTTAAAGAGAAGAAAGGAAAAGATCGCGTTCTTTCAACAAACTTGTTTAAGAGAAGTAAGCTTCATGTTGTTTCTCGTAATCTTTGTTGTGTTAAGGCTTCTTACATCAATTTTCTTTCTGGTTTTGTTACTAAAGGTAGCTTCACTGGACTTCCTCTTTGTTATTAG

Coding sequence (CDS)

ATGACTAATAATAGTAGTAGAAGAAGATCATTAGGGTGGGTGATCGCAGTGCCTTGCACGAGCCGAAATGCTTTAAGAACCGATTCTCAAAAGGGCATTGGAGAAATTCTCAACACCAAATTATCAACCATAATTGAAGAGCCTGAAAATTTGTATGAAGGTAATAATAATGTAAATAGTCCAAGGAATATTAATACCAAGATTAGCAGAAATATTAGTAGCATGAAGTTATGGCTTAAAGAGAAGAAAGGAAAAGATCGCGTTCTTTCAACAAACTTGTTTAAGAGAAGTAAGCTTCATGTTGTTTCTCGTAATCTTTGTTGTGTTAAGGCTTCTTACATCAATTTTCTTTCTGGTTTTGTTACTAAAGGTAGCTTCACTGGACTTCCTCTTTGTTATTAG

Protein sequence

MTNNSSRRRSLGWVIAVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSMKLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTGLPLCY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20393	Spo20393	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20393.1	Spo20393.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20393.1.exon.1	Spo20393.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20393.1.CDS.1	Spo20393.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo20393.1 vs. NCBI nr
Match: gi|870857592|gb|KMT09140.1| (hypothetical protein BVRB_6g132470 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.9 bits (450), Expect = 1.100e-41
Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 1


		  
Query: 1   MTNNSSRRRSLGWVIAVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVN- 60
           MTN+   +RSLGWV  VPCTSR  LRTDSQKGIGEILN+KL+TIIEEPEN YEGN NV+ 
Sbjct: 1   MTNS---KRSLGWVTGVPCTSRKCLRTDSQKGIGEILNSKLTTIIEEPENFYEGNYNVHA 60

Query: 61  SPRNINTKISRNISSMKLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSG 120
           +   INTKI++NIS+MK W K KKGKD   ST LFKRSKLH+VS N  C+K SYINFL+G
Sbjct: 61  TSMKINTKINKNISNMKSWFKGKKGKDLGHSTKLFKRSKLHLVSHNF-CIKGSYINFLAG 120

Query: 121 FVTKGSFTGLPL 132
           FV KGSFTGLPL
Sbjct: 121 FVAKGSFTGLPL 128

[Close]

BLAST of Spo20393.1 vs. NCBI nr
Match: gi|947084987|gb|KRH33708.1| (hypothetical protein GLYMA_10G141300 [Glycine max])

HSP 1 Score: 65.5 bits (158), Expect = 8.200e-8
Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR +LRTDS+K + EIL  KLSTI EEPE   E   N  SPR++     +     
Sbjct: 11  SVPCTSRKSLRTDSRKDMEEILRAKLSTIKEEPELCDE---NFASPRHVRLAKKQG---- 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
               K+ KGKD        K  +  V   NL   K SY+ F++GF +KG+F G
Sbjct: 71  ----KKVKGKD--------KTGRCLVPHVNL---KQSYVLFITGFASKGTFAG 101

[Close]

BLAST of Spo20393.1 vs. NCBI nr
Match: gi|593688898|ref|XP_007145068.1| (hypothetical protein PHAVU_007G206900g [Phaseolus vulgaris])

HSP 1 Score: 63.9 bits (154), Expect = 2.400e-7
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR  LRT+S+K + EIL  KLSTI EEPE   E   N+ SPR++     +     
Sbjct: 11  SVPCTSRKCLRTESRKDMEEILRAKLSTIKEEPELCEE---NLTSPRHMRMAKKQ---GK 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
           K+  K+K  +  V   NL                K SY+ F++GF +KG+F+G
Sbjct: 71  KVQAKDKSARCLVPHVNL----------------KQSYVLFITGFASKGTFSG 101

[Close]

BLAST of Spo20393.1 vs. NCBI nr
Match: gi|734355769|gb|KHN13965.1| (hypothetical protein glysoja_043160 [Glycine soja])

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-7
Identity = 47/113 (41.59%), Postives = 61/113 (53.98%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR +LR DS+K + EIL  KLSTI EEPE   E   N  SPR++     +     
Sbjct: 11  SVPCTSRKSLRNDSRKDMEEILRAKLSTIKEEPELCDE---NFASPRHVRLAKKQG---- 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
               K+ KGKD        K  +  V   NL   K SY+ F++GF +KG+F G
Sbjct: 71  ----KKVKGKD--------KTGRCLVPHVNL---KQSYVLFITGFASKGTFAG 101

[Close]

BLAST of Spo20393.1 vs. NCBI nr
Match: gi|351723873|ref|NP_001237038.1| (uncharacterized protein LOC100500628 [Glycine max])

HSP 1 Score: 63.5 bits (153), Expect = 3.100e-7
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR +LR DS+K + EIL  KLSTI EEPE   E   N+ SPR++           
Sbjct: 11  SVPCTSRKSLRNDSRKDMEEILRAKLSTIKEEPELCDE---NLASPRHV---CMAKKQGK 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
           K+  K+K G+  V   NL                K SY+ F++GF +KG+F G
Sbjct: 71  KVQGKDKTGRCLVPHVNL----------------KQSYVLFITGFASKGAFAG 101

[Close]

BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C5W1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g132470 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 7.900e-42
Identity = 95/132 (71.97%), Postives = 107/132 (81.06%), Query Frame = 1


		  
Query: 1   MTNNSSRRRSLGWVIAVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVN- 60
           MTN+   +RSLGWV  VPCTSR  LRTDSQKGIGEILN+KL+TIIEEPEN YEGN NV+ 
Sbjct: 1   MTNS---KRSLGWVTGVPCTSRKCLRTDSQKGIGEILNSKLTTIIEEPENFYEGNYNVHA 60

Query: 61  SPRNINTKISRNISSMKLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSG 120
           +   INTKI++NIS+MK W K KKGKD   ST LFKRSKLH+VS N  C+K SYINFL+G
Sbjct: 61  TSMKINTKINKNISNMKSWFKGKKGKDLGHSTKLFKRSKLHLVSHNF-CIKGSYINFLAG 120

Query: 121 FVTKGSFTGLPL 132
           FV KGSFTGLPL
Sbjct: 121 FVAKGSFTGLPL 128

[Close]

BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
Match: I1LAX2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G141300 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.700e-8
Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR +LRTDS+K + EIL  KLSTI EEPE   E   N  SPR++     +     
Sbjct: 11  SVPCTSRKSLRTDSRKDMEEILRAKLSTIKEEPELCDE---NFASPRHVRLAKKQG---- 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
               K+ KGKD        K  +  V   NL   K SY+ F++GF +KG+F G
Sbjct: 71  ----KKVKGKD--------KTGRCLVPHVNL---KQSYVLFITGFASKGTFAG 101

[Close]

BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
Match: V7BGS7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G206900g PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.700e-7
Identity = 44/113 (38.94%), Postives = 61/113 (53.98%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR  LRT+S+K + EIL  KLSTI EEPE   E   N+ SPR++     +     
Sbjct: 11  SVPCTSRKCLRTESRKDMEEILRAKLSTIKEEPELCEE---NLTSPRHMRMAKKQ---GK 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
           K+  K+K  +  V   NL                K SY+ F++GF +KG+F+G
Sbjct: 71  KVQAKDKSARCLVPHVNL----------------KQSYVLFITGFASKGTFSG 101

[Close]

BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
Match: C6T2B1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G089900 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.200e-7
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR +LR DS+K + EIL  KLSTI EEPE   E   N+ SPR++           
Sbjct: 11  SVPCTSRKSLRNDSRKDMEEILRAKLSTIKEEPELCDE---NLASPRHV---CMAKKQGK 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
           K+  K+K G+  V   NL                K SY+ F++GF +KG+F G
Sbjct: 71  KVQGKDKTGRCLVPHVNL----------------KQSYVLFITGFASKGAFAG 101

[Close]

BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QDI0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_047395 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.200e-7
Identity = 45/113 (39.82%), Postives = 60/113 (53.10%), Query Frame = 1


		  
Query: 16  AVPCTSRNALRTDSQKGIGEILNTKLSTIIEEPENLYEGNNNVNSPRNINTKISRNISSM 75
           +VPCTSR +LR DS+K + EIL  KLSTI EEPE   E   N+ SPR++           
Sbjct: 11  SVPCTSRKSLRNDSRKDMEEILRAKLSTIKEEPELCDE---NLASPRHV---CMAKKQGK 70

Query: 76  KLWLKEKKGKDRVLSTNLFKRSKLHVVSRNLCCVKASYINFLSGFVTKGSFTG 129
           K+  K+K G+  V   NL                K SY+ F++GF +KG+F G
Sbjct: 71  KVQGKDKTGRCLVPHVNL----------------KQSYVLFITGFASKGAFAG 101

The following BLAST results are available for this feature:

BLAST of Spo20393.1 vs. NCBI nr
BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
BLAST of Spo20393.1 vs. ExPASy Swiss-Prot
BLAST of Spo20393.1 vs. TAIR (Arabidopsis)

BLAST of Spo20393.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|870857592\|gb\|KMT09140.1\|	1.1e-41	71.9	hypothetical protein BVRB_6g13...	[more]
gi\|947084987\|gb\|KRH33708.1\|	8.2e-8	42.4	hypothetical protein GLYMA_10G...	[more]
gi\|593688898\|ref\|XP_007145068.1\|	2.4e-7	38.9	hypothetical protein PHAVU_007...	[more]
gi\|734355769\|gb\|KHN13965.1\|	3.1e-7	41.5	hypothetical protein glysoja_0...	[more]
gi\|351723873\|ref\|NP_001237038.1\|	3.1e-7	39.8	uncharacterized protein LOC100...	[more]

BLAST of Spo20393.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8C5W1_BETVU	7.9e-42	71.9	Uncharacterized protein OS=Bet...	[more]
I1LAX2_SOYBN	5.7e-8	42.4	Uncharacterized protein OS=Gly...	[more]
V7BGS7_PHAVU	1.7e-7	38.9	Uncharacterized protein OS=Pha...	[more]
C6T2B1_SOYBN	2.2e-7	39.8	Uncharacterized protein OS=Gly...	[more]
A0A0B2QDI0_GLYSO	2.2e-7	39.8	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo20393.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo20393.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description