Spo20441.1 (mRNA) | SpinachBase

Overview


Name	Spo20441.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Photosystem I reaction center subunit X psaK
Location	chr6 : 29771052 .. 29773477 (+)
Sequence length	1550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATATTAAACCTGAATATTGCAATAATATTGCAGCATTAGGAATATAACAAAAGTACTTGTTTTATTTATCCAATCAACATCTTATCCTAAGTCGAGACACCCAATTGCACAATGCCATGTAAGCAATAAGTAAGTAGAGTGAATCCAACATCAAGCTAACCACACAACTCCTTTGTGGCTGTGATCAAACATGTAACATCCCTTCACTTTAAGATCTTTTTCAAATAACCAAATTTATTCACCAAAAATCACCCAAACCCAGAAAAAACAGAGGAATTATAGCATCAATCTTCAATGGCATCAGTTATGATGACTTCTCTCCCACAGTTCACTGGGCTTAGATCTCAGCAGGCTTCTTTCCCTGTCAAAAGCTTGGTTTGTCTTTTTAACATCTTTTCCTCATTCTTTATGTGTCGTGCTAATTATAAGGAATTAAAATTAGAAATGTTAAGCATTTGATAACACTGAATCACATAAGGAATAATTTATTGGGACTTGTTTTGGAGTAGTATATAAGCAACATTTTAGATTATGGTGAAACTTATGTAGTAGTGGCCAGTGGGTATATGATTTTGTATATTTCAAAGAAGTTAATTGATTGTTGTACATAATACTACCTCCGTTTCAGAAAGTTCTTTACGCTTTTGAAAATGTGTCCAAAGTATAAAAACTTTGTCGTAAATTCTCACTAATATATACATCAAAACGTTACATGTAAAATCTTGTTAGATTGGTCTCGGGATGTATTTTCAGAATATCAAATTTTTATAATTTTTTCACATACGAAATTGGATATATTATTAGTTAAATATTGCATTAGAGTCCGGGCAAATAGTAACTATAAAGATATTTTTGAAACGGAGGTAGTACGTAATTAAACTATCAAGTGATTGTTTAATTTGCAGTCAGCAGGTCTGCCATTGAGGGGCAAAGGGAAGGGAGCTTTGGGTGCACGATGTGGCGATTTCATTGGCTCATCCACTAACTTGGTAACTATTTCTTATTACCCCATAAATGGGATTGTTATTTATGGTTCTTGTAAATTGTAATTGGTACTCATTGTAGTCAACTAGTCACATTGTTGCAACCTCTCGTGATTAAAGTATGTGACACAATTTTACTCAAATACGCGTACATTACATACTAGTTGGATAGTTTTAGTTTAGTAAGGGTCCGATGAAAAAACCTATCAGATCAACGCGACAATATTTCTTAGACAACCTAAAATTGTACTCGACGTGAGAATTAATTTTCCGAATGGAACTAATTAAGGTGATTATTTCAAGTAATATAACATTGATAAAGATAAATGAATATTGTTAATGGGGAATGCAGATAATGGTGACTTCAACAACCCTAATGTTGTTTGCTGGACGATTCGGGCTAGCTCCGTCAGCCAATAGAAAGTCGACAGCGGGTTTGAGATTGGAAGTAAGAGACTCAGGATTACAAACTGGTGACCCAGCTGGTTTTACACTTGCGGACACCCTTGCTTGTGGTTCATTTGGTCACATTATTGGTGTTGGTGTTGTACTTGGCCTCAAGAACATTGGAGCTATTTAAACATATATGCCTTTGTTATTTGTTGGTTTAAGCTTGTAAAATACTCATTTTTAATATATTATTATGCCATGTCTCAATGTTTATAAACTATAGTCGATAGGGAGTGTCACTTACCAACAAAATTGGTGTTATATCGATCTCCTTATTGCAAGCATATGTTTACGGAGGAAACACTAAAACTTTATAACTTCAAGTTTCAAAACTATTAATGGGAACTTTAAATTTTAGGTCATGAATTTTGTGTTTAATTAGGTTTACTGATGACTAGCTCAATCAGCTCATTAAACAGAAATGCAACAAATACTATGACGGCCTAAACTAAAATGGAATAGTCTATATATATAAATCGGGGAACTTCAGTTCGGGTTAATCTCGGGTTCGGTTGGAACTGGTTCAGGTTTAATACGGGTTTTTTTATCGGATTGATTTTGTTTGGATTAAGTCCGTTTCGAGTGTATGTCAGATTCGGGTACAATTTGATCGGTTTACTTCGGGCACGAGTATGTTCGGATCGGCTAAGTCTCGGATTCGAGCCAAGTATGAATCTGTGAGTCAAGGTAAGAAGAAGGGACCCTACTGAACCAACACCTAACACATGTTAACCAGTCCAGCTACGCGGATTTTCGCTTGAGCCACTCCCAAACACTTTTACAGCTGATGGAGCTCGAACCTTTGATCTCCAAGTCAATGGGAGTTCCCTACCAACTCCACCAACTTATGTTAGTTATGGAATAGTCTATATGAGAGGGAATAATAAATGATAGTATGTGTACACATTATCTGTGGCGTACATATACATACTCCATCTGCCCTGAATATTTTTTACGTTTGCCATTTTATGTGGTTATTAAGGATAAGA

mRNA sequence

TATTATATTAAACCTGAATATTGCAATAATATTGCAGCATTAGGAATATAACAAAAGTACTTGTTTTATTTATCCAATCAACATCTTATCCTAAGTCGAGACACCCAATTGCACAATGCCATGTAAGCAATAAGTAAGTAGAGTGAATCCAACATCAAGCTAACCACACAACTCCTTTGTGGCTGTGATCAAACATGTAACATCCCTTCACTTTAAGATCTTTTTCAAATAACCAAATTTATTCACCAAAAATCACCCAAACCCAGAAAAAACAGAGGAATTATAGCATCAATCTTCAATGGCATCAGTTATGATGACTTCTCTCCCACAGTTCACTGGGCTTAGATCTCAGCAGGCTTCTTTCCCTGTCAAAAGCTTGTCAGCAGGTCTGCCATTGAGGGGCAAAGGGAAGGGAGCTTTGGGTGCACGATGTGGCGATTTCATTGGCTCATCCACTAACTTGATAATGGTGACTTCAACAACCCTAATGTTGTTTGCTGGACGATTCGGGCTAGCTCCGTCAGCCAATAGAAAGTCGACAGCGGGTTTGAGATTGGAAGTAAGAGACTCAGGATTACAAACTGGTGACCCAGCTGGTTTTACACTTGCGGACACCCTTGCTTGTGGTTCATTTGGTCACATTATTGGTGTTGGTGTTGTACTTGGCCTCAAGAACATTGGAGCTATTTAAACATATATGCCTTTGTTATTTGTTGGTTTAAGCTTGTAAAATACTCATTTTTAATATATTATTATGCCATGTCTCAATGTTTATAAACTATAGTCGATAGGGAGTGTCACTTACCAACAAAATTGGTGTTATATCGATCTCCTTATTGCAAGCATATGTTTACGGAGGAAACACTAAAACTTTATAACTTCAAGTTTCAAAACTATTAATGGGAACTTTAAATTTTAGGTCATGAATTTTGTGTTTAATTAGGTTTACTGATGACTAGCTCAATCAGCTCATTAAACAGAAATGCAACAAATACTATGACGGCCTAAACTAAAATGGAATAGTCTATATATATAAATCGGGGAACTTCAGTTCGGGTTAATCTCGGGTTCGGTTGGAACTGGTTCAGGTTTAATACGGGTTTTTTTATCGGATTGATTTTGTTTGGATTAAGTCCGTTTCGAGTGTATGTCAGATTCGGGTACAATTTGATCGGTTTACTTCGGGCACGAGTATGTTCGGATCGGCTAAGTCTCGGATTCGAGCCAAGTATGAATCTGTGAGTCAAGGTAAGAAGAAGGGACCCTACTGAACCAACACCTAACACATGTTAACCAGTCCAGCTACGCGGATTTTCGCTTGAGCCACTCCCAAACACTTTTACAGCTGATGGAGCTCGAACCTTTGATCTCCAAGTCAATGGGAGTTCCCTACCAACTCCACCAACTTATGTTAGTTATGGAATAGTCTATATGAGAGGGAATAATAAATGATAGTATGTGTACACATTATCTGTGGCGTACATATACATACTCCATCTGCCCTGAATATTTTTTACGTTTGCCATTTTATGTGGTTATTAAGGATAAGA

Coding sequence (CDS)

ATGGCATCAGTTATGATGACTTCTCTCCCACAGTTCACTGGGCTTAGATCTCAGCAGGCTTCTTTCCCTGTCAAAAGCTTGTCAGCAGGTCTGCCATTGAGGGGCAAAGGGAAGGGAGCTTTGGGTGCACGATGTGGCGATTTCATTGGCTCATCCACTAACTTGATAATGGTGACTTCAACAACCCTAATGTTGTTTGCTGGACGATTCGGGCTAGCTCCGTCAGCCAATAGAAAGTCGACAGCGGGTTTGAGATTGGAAGTAAGAGACTCAGGATTACAAACTGGTGACCCAGCTGGTTTTACACTTGCGGACACCCTTGCTTGTGGTTCATTTGGTCACATTATTGGTGTTGGTGTTGTACTTGGCCTCAAGAACATTGGAGCTATTTAA

Protein sequence

MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGVVLGLKNIGAI

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20441	Spo20441	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20441.1	Spo20441.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20441.1.exon.1	Spo20441.1.exon.1	exon
Spo20441.1.exon.2	Spo20441.1.exon.2	exon
Spo20441.1.exon.3	Spo20441.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20441.1.utr5p.1	Spo20441.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20441.1.CDS.1	Spo20441.1.CDS.1	CDS
Spo20441.1.CDS.2	Spo20441.1.CDS.2	CDS
Spo20441.1.CDS.3	Spo20441.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20441.1.utr3p.1	Spo20441.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo20441.1 vs. NCBI nr
Match: gi|902186384|gb|KNA10668.1| (hypothetical protein SOVF_142180 [Spinacia oleracea])

HSP 1 Score: 250.0 bits (637), Expect = 2.300e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60
           MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS
Sbjct: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60

Query: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120
           TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV
Sbjct: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120

Query: 121 VLGLKNIGAI 131
           VLGLKNIGAI
Sbjct: 121 VLGLKNIGAI 130

[Close]

BLAST of Spo20441.1 vs. NCBI nr
Match: gi|731349633|ref|XP_010686093.1| (PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 222.2 bits (565), Expect = 5.100e-55
Identity = 117/130 (90.00%), Postives = 123/130 (94.62%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60
           MASV+MTSLP FTGLR QQAS PVKSLSA LPL+GKGKGALGARC DFIGS TNLIMVTS
Sbjct: 1   MASVVMTSLPHFTGLRPQQASSPVKSLSAALPLKGKGKGALGARC-DFIGSPTNLIMVTS 60

Query: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120
           T+LMLFAGRFGLAPSANRK+TAGLRLEVRDSGLQTGDPAGFTLADTLACG+ GHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKATAGLRLEVRDSGLQTGDPAGFTLADTLACGTVGHIIGVGV 120

Query: 121 VLGLKNIGAI 131
           VLGLKNIGA+
Sbjct: 121 VLGLKNIGAL 129

[Close]

BLAST of Spo20441.1 vs. NCBI nr
Match: gi|1012346532|gb|KYP57724.1| (hypothetical protein KK1_003994 [Cajanus cajan])

HSP 1 Score: 204.1 bits (518), Expect = 1.400e-49
Identity = 107/130 (82.31%), Postives = 119/130 (91.54%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60
           MA+ +MT+LPQFTGLR Q ++ PV++L A  P+R KGKGALGARC DFIGSSTNLIMV S
Sbjct: 1   MATTVMTTLPQFTGLRPQFSAAPVQNLVAVQPMRRKGKGALGARC-DFIGSSTNLIMVAS 60

Query: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120
           TTLMLFAGRFGLAPSANRK+TAGL+LEVRDSGLQTGDPAGFTLADTLACG+ GHIIGVGV
Sbjct: 61  TTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGTVGHIIGVGV 120

Query: 121 VLGLKNIGAI 131
           VLGLKNIGA+
Sbjct: 121 VLGLKNIGAL 129

[Close]

BLAST of Spo20441.1 vs. NCBI nr
Match: gi|567146314|ref|XP_006415479.1| (hypothetical protein EUTSA_v10009090mg [Eutrema salsugineum])

HSP 1 Score: 203.8 bits (517), Expect = 1.900e-49
Identity = 107/131 (81.68%), Postives = 118/131 (90.08%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASF-PVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVT 60
           MAS +MT+LPQF GLR+ + S  PV+ L+   P+R KG GALGA+CGDFIGSSTNLIMVT
Sbjct: 1   MASTVMTTLPQFNGLRACKISAAPVQGLATVQPMRRKGNGALGAKCGDFIGSSTNLIMVT 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGL+LE R+SGLQTGDPAGFTLADTLACGSFGHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLKLESRESGLQTGDPAGFTLADTLACGSFGHIIGVG 120

Query: 121 VVLGLKNIGAI 131
           VVLGLKNIGAI
Sbjct: 121 VVLGLKNIGAI 131

[Close]

BLAST of Spo20441.1 vs. NCBI nr
Match: gi|297845970|ref|XP_002890866.1| (photosystem I reaction center subunit X psaK [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 202.2 bits (513), Expect = 5.500e-49
Identity = 106/131 (80.92%), Postives = 117/131 (89.31%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASF-PVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVT 60
           MAS +MT+LPQF GLR+ + S  PV+ L++  P+R KG GALGA+CGDFIGSSTNLIMVT
Sbjct: 1   MASTVMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKCGDFIGSSTNLIMVT 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGLRLE RDSGLQTGDPAGFTLADTLACG+ GHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKNIGAI 131
           VVLGLK IGAI
Sbjct: 121 VVLGLKKIGAI 131

[Close]

BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVE0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142180 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.600e-63
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60
           MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS
Sbjct: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60

Query: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120
           TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV
Sbjct: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120

Query: 121 VLGLKNIGAI 131
           VLGLKNIGAI
Sbjct: 121 VLGLKNIGAI 130

[Close]

BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZU6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176760 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.600e-55
Identity = 117/130 (90.00%), Postives = 123/130 (94.62%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60
           MASV+MTSLP FTGLR QQAS PVKSLSA LPL+GKGKGALGARC DFIGS TNLIMVTS
Sbjct: 1   MASVVMTSLPHFTGLRPQQASSPVKSLSAALPLKGKGKGALGARC-DFIGSPTNLIMVTS 60

Query: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120
           T+LMLFAGRFGLAPSANRK+TAGLRLEVRDSGLQTGDPAGFTLADTLACG+ GHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKATAGLRLEVRDSGLQTGDPAGFTLADTLACGTVGHIIGVGV 120

Query: 121 VLGLKNIGAI 131
           VLGLKNIGA+
Sbjct: 121 VLGLKNIGAL 129

[Close]

BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
Match: A0A151SSA9_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_003994 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.000e-49
Identity = 107/130 (82.31%), Postives = 119/130 (91.54%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTS 60
           MA+ +MT+LPQFTGLR Q ++ PV++L A  P+R KGKGALGARC DFIGSSTNLIMV S
Sbjct: 1   MATTVMTTLPQFTGLRPQFSAAPVQNLVAVQPMRRKGKGALGARC-DFIGSSTNLIMVAS 60

Query: 61  TTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGV 120
           TTLMLFAGRFGLAPSANRK+TAGL+LEVRDSGLQTGDPAGFTLADTLACG+ GHIIGVGV
Sbjct: 61  TTLMLFAGRFGLAPSANRKATAGLKLEVRDSGLQTGDPAGFTLADTLACGTVGHIIGVGV 120

Query: 121 VLGLKNIGAI 131
           VLGLKNIGA+
Sbjct: 121 VLGLKNIGAL 129

[Close]

BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
Match: V4L252_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10009090mg PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.300e-49
Identity = 107/131 (81.68%), Postives = 118/131 (90.08%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASF-PVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVT 60
           MAS +MT+LPQF GLR+ + S  PV+ L+   P+R KG GALGA+CGDFIGSSTNLIMVT
Sbjct: 1   MASTVMTTLPQFNGLRACKISAAPVQGLATVQPMRRKGNGALGAKCGDFIGSSTNLIMVT 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGL+LE R+SGLQTGDPAGFTLADTLACGSFGHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLKLESRESGLQTGDPAGFTLADTLACGSFGHIIGVG 120

Query: 121 VVLGLKNIGAI 131
           VVLGLKNIGAI
Sbjct: 121 VVLGLKNIGAI 131

[Close]

BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
Match: D7KET8_ARALL (Photosystem I reaction center subunit X psaK OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_890580 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.800e-49
Identity = 106/131 (80.92%), Postives = 117/131 (89.31%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASF-PVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVT 60
           MAS +MT+LPQF GLR+ + S  PV+ L++  P+R KG GALGA+CGDFIGSSTNLIMVT
Sbjct: 1   MASTVMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKCGDFIGSSTNLIMVT 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGLRLE RDSGLQTGDPAGFTLADTLACG+ GHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKNIGAI 131
           VVLGLK IGAI
Sbjct: 121 VVLGLKKIGAI 131

[Close]

BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
Match: PSAK_ARATH (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana GN=PSAK PE=2 SV=2)

HSP 1 Score: 199.5 bits (506), Expect = 2.200e-50
Identity = 107/131 (81.68%), Postives = 117/131 (89.31%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASF-PVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVT 60
           MAS MMT+LPQF GLR+ + S  PV+ L++  P+R KG GALGA+C DFIGSSTNLIMVT
Sbjct: 1   MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKC-DFIGSSTNLIMVT 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGLRLE RDSGLQTGDPAGFTLADTLACG+ GHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKNIGAI 131
           VVLGLKNIGAI
Sbjct: 121 VVLGLKNIGAI 130

[Close]

BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
Match: PSAK_MEDSA (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa GN=PSAK PE=2 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.500e-46
Identity = 99/128 (77.34%), Postives = 110/128 (85.94%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASFPVKSLSAGLPL-RGKGKGALGARCGDFIGSSTNLIMVT 60
           MA+ MMT+LPQFTGLR Q    P++ L A  P+ R KGKGALG RC DFIGSSTN+IMV 
Sbjct: 1   MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRC-DFIGSSTNVIMVA 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGL+LE RDSGLQTGDPAGFTLADTLACG+ GHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKNI 128
           VVLGL+ +
Sbjct: 121 VVLGLRTL 127

[Close]

BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
Match: PSAK_HORVU (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare GN=PSAK PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.400e-38
Identity = 85/125 (68.00%), Postives = 101/125 (80.80%), Query Frame = 1


		  
Query: 6   MTSLPQFTGLRSQQASFPVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVTSTTLML 65
           MTS+PQF GLR+  +   + +L +    R +G      RC D+IGSSTNLIMVT+TTLML
Sbjct: 8   MTSVPQFHGLRTYSSPRSMATLPSLRRRRSQG-----IRC-DYIGSSTNLIMVTTTTLML 67

Query: 66  FAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGVVLGLK 125
           FAGRFGLAPSANRK+TAGL+LE R+SGLQTGDPAGFTLADTLACG+ GHI+GVG+VLGLK
Sbjct: 68  FAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLK 126

Query: 126 NIGAI 131
           N G +
Sbjct: 128 NTGVL 126

[Close]

BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
Match: PSAK_CHLRE (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAK PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.400e-20
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 1


		  
Query: 28  SAGLPLRGKGKGALGARCGDFIGSSTNLIMVTSTTLMLFAGRFGLAPSANRKSTAGLRL- 87
           SA  P +   + ++  R   FIGSSTNLIMV STT  L A RFGLAP+  + +TAGL+L 
Sbjct: 9   SAIRPTKAARRSSVVVRADGFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLV 68

Query: 88  -EVRDSGLQTGDPAGFTLADTLACGSFGHIIGVGVVLGLKNIGAI 131
                +G+ + DPAGFT+ D LA G+ GH +GVG+VLGLK IGA+
Sbjct: 69  DSKNSAGVISNDPAGFTIVDVLAMGAAGHGLGVGIVLGLKGIGAL 113

[Close]

BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
Match: PSAK_SPIOL (Photosystem I reaction center subunit psaK, chloroplastic (Fragment) OS=Spinacia oleracea GN=PSAK PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 8.000e-8
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 1


		  
Query: 46 GDFIGSSTNLIMVTSTTLMLFAGRFGLAP 75
          GDFIGSSTNLIMVTSTTLMLFAGRFGL P
Sbjct: 1  GDFIGSSTNLIMVTSTTLMLFAGRFGLXP 29

[Close]

BLAST of Spo20441.1 vs. TAIR (Arabidopsis)
Match: AT1G30380.1 (photosystem I subunit K)

HSP 1 Score: 199.5 bits (506), Expect = 1.300e-51
Identity = 107/131 (81.68%), Postives = 117/131 (89.31%), Query Frame = 1


		  
Query: 1   MASVMMTSLPQFTGLRSQQASF-PVKSLSAGLPLRGKGKGALGARCGDFIGSSTNLIMVT 60
           MAS MMT+LPQF GLR+ + S  PV+ L++  P+R KG GALGA+C DFIGSSTNLIMVT
Sbjct: 1   MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKC-DFIGSSTNLIMVT 60

Query: 61  STTLMLFAGRFGLAPSANRKSTAGLRLEVRDSGLQTGDPAGFTLADTLACGSFGHIIGVG 120
           STTLMLFAGRFGLAPSANRK+TAGLRLE RDSGLQTGDPAGFTLADTLACG+ GHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKNIGAI 131
           VVLGLKNIGAI
Sbjct: 121 VVLGLKNIGAI 130

The following BLAST results are available for this feature:

BLAST of Spo20441.1 vs. NCBI nr
BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
BLAST of Spo20441.1 vs. TAIR (Arabidopsis)

BLAST of Spo20441.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902186384\|gb\|KNA10668.1\|	2.3e-63	100.	hypothetical protein SOVF_1421...	[more]
gi\|731349633\|ref\|XP_010686093.1\|	5.1e-55	90.0	PREDICTED: photosystem I react...	[more]
gi\|1012346532\|gb\|KYP57724.1\|	1.4e-49	82.3	hypothetical protein KK1_00399...	[more]
gi\|567146314\|ref\|XP_006415479.1\|	1.9e-49	81.6	hypothetical protein EUTSA_v10...	[more]
gi\|297845970\|ref\|XP_002890866.1\|	5.5e-49	80.9	photosystem I reaction center ...	[more]

BLAST of Spo20441.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVE0_SPIOL	1.6e-63	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BZU6_BETVU	3.6e-55	90.0	Uncharacterized protein OS=Bet...	[more]
A0A151SSA9_CAJCA	1.0e-49	82.3	Uncharacterized protein OS=Caj...	[more]
V4L252_EUTSA	1.3e-49	81.6	Uncharacterized protein OS=Eut...	[more]
D7KET8_ARALL	3.8e-49	80.9	Photosystem I reaction center ...	[more]

BLAST of Spo20441.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PSAK_ARATH	2.2e-50	81.6	Photosystem I reaction center ...	[more]
PSAK_MEDSA	1.5e-46	77.3	Photosystem I reaction center ...	[more]
PSAK_HORVU	4.4e-38	68.0	Photosystem I reaction center ...	[more]
PSAK_CHLRE	1.4e-20	52.3	Photosystem I reaction center ...	[more]
PSAK_SPIOL	8.0e-8	96.5	Photosystem I reaction center ...	[more]

BLAST of Spo20441.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G30380.1	1.3e-51	81.6	photosystem I subunit K	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000549	Photosystem I PsaG/PsaK protein	PFAM	PF01241	PSI_PSAK	coord: 52..128 score: 1.6
IPR000549	Photosystem I PsaG/PsaK protein	PROSITE	PS01026	PHOTOSYSTEM_I_PSAGK	coord: 100..117 scor
IPR000549	Photosystem I PsaG/PsaK protein	unknown	SSF81563	Photosystem I reaction center subunit X, PsaK	coord: 99..124 score: 3.7
IPR017493	Photosystem I PsaK, reaction centre, plant	TIGRFAMs	TIGR03050	TIGR03050	coord: 48..130 score: 1.1
IPR023618	Photosystem I PsaG/PsaK domain	GENE3D	1.10.286.40		coord: 48..128 score: 7.2
None	No IPR available	PANTHER	PTHR34195	FAMILY NOT NAMED	coord: 1..130 score: 1.5
None	No IPR available	PANTHER	PTHR34195:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC	coord: 1..130 score: 1.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0030003	cellular cation homeostasis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0070838	divalent metal ion transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016168	chlorophyll binding