Spo20549.1 (mRNA) | SpinachBase

Overview


Name	Spo20549.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaAnng22160D protein
Location	SpoScf_45744 : 108 .. 314 (+)
Sequence length	207

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCCGTGAACCATCTAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAACCCGCCCACAGCGGGGCGGAGGAGGAGGATGGCCTCCCATGCCTCACCGGGCGTGGATGGCCTAAATAAGGAGCCCCCGGTTACGAACTGCCGCGGCGATAGGTGGTAG

mRNA sequence

AATCCCGTGAACCATCTAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAACCCGCCCACAGCGGGGCGGAGGAGGAGGATGGCCTCCCATGCCTCACCGGGCGTGGATGGCCTAAATAAGGAGCCCCCGGTTACGAACTGCCGCGGCGATAGGTGGTAG

Coding sequence (CDS)

AATCCCGTGAACCATCTAGTCTTTGAACGCAAGTTGCGCCCGAAGCCTTCTGGCCGAGGGCACGCCTGCCTGGGCGTCACGCATCGCGTCTCCCCCAACCCGCCCACAGCGGGGCGGAGGAGGAGGATGGCCTCCCATGCCTCACCGGGCGTGGATGGCCTAAATAAGGAGCCCCCGGTTACGAACTGCCGCGGCGATAGGTGGTAG

Protein sequence

NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEPPVTNCRGDRW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20549	Spo20549	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20549.1	Spo20549.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20549.1.exon.1	Spo20549.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20549.1.CDS.1	Spo20549.1.CDS.1	CDS

Homology

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BLAST of Spo20549.1 vs. NCBI nr
Match: gi|902146143|gb|KNA05036.1| (hypothetical protein SOVF_194100 [Spinacia oleracea])

HSP 1 Score: 139.0 bits (349), Expect = 3.000e-30
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEPPV 60
          NPVNH VFERKLRPKPSGRGHACLGVTHRVSPNP TAGR RRMASH SPGVDGLNKEPPV
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHACLGVTHRVSPNPRTAGRSRRMASHPSPGVDGLNKEPPV 74

Query: 61 TNCRGDRW 69
          TNCR DRW
Sbjct: 75 TNCRSDRW 82

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BLAST of Spo20549.1 vs. NCBI nr
Match: gi|110740644|dbj|BAE98425.1| (hypothetical protein [Arabidopsis thaliana])

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-9
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLN 56
          NPVNH VFERKLRPKPSGRGH CLGVT+R  P+P  A   R++ S   P   GLN
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSPSFADAGRKLVSRVLPHAVGLN 68

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BLAST of Spo20549.1 vs. NCBI nr
Match: gi|567862244|ref|XP_006423776.1| (hypothetical protein CICLE_v10029531mg [Citrus clementina])

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8
Identity = 34/52 (65.38%), Postives = 35/52 (67.31%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPP-----TAGRRRRMASHA 48
          NPVNH VFERKLRPKP GRGH CLGVTHR    PP       G  RR+AS A
Sbjct: 31 NPVNHRVFERKLRPKPLGRGHVCLGVTHRCPTPPPQTKAGAPGCGRRLASRA 82

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BLAST of Spo20549.1 vs. NCBI nr
Match: gi|604301243|gb|EYU20954.1| (hypothetical protein MIMGU_mgv1a018198mg [Erythranthe guttata])

HSP 1 Score: 65.1 bits (157), Expect = 5.500e-8
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRR 41
          NPVNH VFERKLRPKP GRGH CLGVTH V+P PP + RR
Sbjct: 15 NPVNHRVFERKLRPKPLGRGHVCLGVTHCVAP-PPLSLRR 53

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BLAST of Spo20549.1 vs. NCBI nr
Match: gi|566211063|ref|XP_006372605.1| (hypothetical protein POPTR_0017s03170g [Populus trichocarpa])

HSP 1 Score: 65.1 bits (157), Expect = 5.500e-8
Identity = 32/58 (55.17%), Postives = 35/58 (60.34%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEP 59
          NPVNH VFERKLRP+P GRGH CLGVTHR   +P      R + S A P   G    P
Sbjct: 15 NPVNHRVFERKLRPRPLGRGHVCLGVTHRRPHSPRLTRAGRILVSRALPLAAGPKSSP 72

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BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QER4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194100 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.100e-30
Identity = 63/68 (92.65%), Postives = 63/68 (92.65%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNKEPPV 60
          NPVNH VFERKLRPKPSGRGHACLGVTHRVSPNP TAGR RRMASH SPGVDGLNKEPPV
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHACLGVTHRVSPNPRTAGRSRRMASHPSPGVDGLNKEPPV 74

Query: 61 TNCRGDRW 69
          TNCR DRW
Sbjct: 75 TNCRSDRW 82

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BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GIU0_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.800e-10
Identity = 33/56 (58.93%), Postives = 37/56 (66.07%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLNK 57
          NPVNH VFERKLRPKP GRGH CLG+THRV+P  P    R R  +  +P   G  K
Sbjct: 15 NPVNHRVFERKLRPKPLGRGHVCLGITHRVAPRTPQGAERGRKLASRAPRARGWPK 70

[Close]

BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: Q0WWS3_ARATH (Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.100e-10
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAGRRRRMASHASPGVDGLN 56
          NPVNH VFERKLRPKPSGRGH CLGVT+R  P+P  A   R++ S   P   GLN
Sbjct: 15 NPVNHRVFERKLRPKPSGRGHVCLGVTNR-RPSPSFADAGRKLVSRVLPHAVGLN 68

[Close]

BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: V4UD02_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029524mg PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.000e-8
Identity = 34/52 (65.38%), Postives = 35/52 (67.31%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPP-----TAGRRRRMASHA 48
          NPVNH VFERKLRPKP GRGH CLGVTHR    PP       G  RR+AS A
Sbjct: 31 NPVNHRVFERKLRPKPLGRGHVCLGVTHRCPTPPPQTKAGAPGCGRRLASRA 82

[Close]

BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Match: M1D9E9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400034963 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.900e-8
Identity = 29/38 (76.32%), Postives = 30/38 (78.95%), Query Frame = 1

		  
Query: 1  NPVNHLVFERKLRPKPSGRGHACLGVTHRVSPNPPTAG 39
          NPVNH VFERKLRPKP GRGH CLGVTHRV+P     G
Sbjct: 15 NPVNHRVFERKLRPKPLGRGHVCLGVTHRVAPRTLRGG 52

The following BLAST results are available for this feature:

BLAST of Spo20549.1 vs. NCBI nr
BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
BLAST of Spo20549.1 vs. ExPASy Swiss-Prot
BLAST of Spo20549.1 vs. TAIR (Arabidopsis)

BLAST of Spo20549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902146143\|gb\|KNA05036.1\|	3.0e-30	92.6	hypothetical protein SOVF_1941...	[more]
gi\|110740644\|dbj\|BAE98425.1\|	1.3e-9	63.6	hypothetical protein [Arabidop...	[more]
gi\|567862244\|ref\|XP_006423776.1\|	1.4e-8	65.3	hypothetical protein CICLE_v10...	[more]
gi\|604301243\|gb\|EYU20954.1\|	5.5e-8	77.5	hypothetical protein MIMGU_mgv...	[more]
gi\|566211063\|ref\|XP_006372605.1\|	5.5e-8	55.1	hypothetical protein POPTR_001...	[more]

BLAST of Spo20549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QER4_SPIOL	2.1e-30	92.6	Uncharacterized protein OS=Spi...	[more]
A0A0V0GIU0_SOLCH	1.8e-10	58.9	Putative ovule protein OS=Sola...	[more]
Q0WWS3_ARATH	9.1e-10	63.6	Putative uncharacterized prote...	[more]
V4UD02_9ROSI	1.0e-8	65.3	Uncharacterized protein OS=Cit...	[more]
M1D9E9_SOLTU	2.9e-8	76.3	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo20549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo20549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33220	FAMILY NOT NAMED	coord: 1..29 score: 2.8
None	No IPR available	PANTHER	PTHR33220:SF1	SUBFAMILY NOT NAMED	coord: 1..29 score: 2.8