Spo20605.1 (mRNA) | SpinachBase

Overview


Name	Spo20605.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 44537752 .. 44540272 (+)
Sequence length	476

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTAGAAGAATTTGAGGTAGTACCGTAGTAGTCATACTTGTCAGTCACCGGCTCAACTCACTAGTGAGTAGTGACGAGCTCACTGCCACCTGCGTACCCGAATCCCGATAAACATCTATCCAGAAAATGGGAAGTTGAACACAACGAAACCAGCCACCCAAATATTTTGTCACCAATTCACCATTTACAACAACATAGTTGGAGAGTGAAAGAGCAGATCTAGAGAATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGGTTATTTCTATCAATGCCTTACTTCTAACATTTTGATAAATTTGTTTAAGAATTACGGCTTCTTATAATTATCTATTTTTTGTGATCTTTGTGAAATTTTATGGAAATGGTGGTCTGGGTTATGTGGATTATAGTGTGTTCTTATCAATTTTGAATTGGGGTATGTTAATGAGCCATTTATTTCTCTTATAATGGACTAGAATTATACTATTTGTTTTCTATTTTATCTGCACTCTGCAATTATGGGTTGGATATTGCCCTTCAGTTTTGGGGGAAGATTTACTTTTATACATAGAAATTGCAGGTTTGTTTGATTCTGAATTATGATTTTTTTTTTTTCATTTGTGCAACTAGATTTCACAATCGCCTTCTGTTGTTGTTTAGCCATAAGCTTGAAATCAGCAAATTAGCCATTAACTTGCTATTGATAAACTAGTCATACGACGTCTACAATAAAAATCAAAACTAACAAATACAAAATCATTTGGATCAAACAAAATTCTAATCCGGCAAAACCACTATCGTTGTAGAGATCTGACAATGATGAATACCCTCTTTCACATGGCTGTTTGATACATCCATCAACGAGGGGGTATTTCAATCTGTTGTAGCTTTGGTATTGAATTAAATTCGATTCAATTGATTGTAGACGTAAGAATGACATCCATTGTAACCCCGCACAAATCTTCATCAATAAATCAAAAGCTCTCCAATAAGGAGGGAATGGAGTTTTTATTCCGAACATGAAATCAAAAGCTAGGAAAAGCAAGAAAAAAGGGGCTTACCATCAACCTAATGGTTGGTGGTAGCCCCTAAAAAATTAGGGTTTTGAAAGAAAAAGAGAGAAAAGGGAGAGATGGTTGAACATTATTTTAAATTTGTTGTTGACTTTTGGCTGTCAAATTGCAAATGTCTTTCATGTATTAAAATATGAAAGATTTTATTTCCTTATTTGCAATATGGCATTAAATAATTAGTTTTTGGGAAATTCTACATGGTGACTTTGTACTATAGTATTTTCTACTTGGCGGAAATAAAATAATTTGACTTTCTAGAGTGGGCTTGTAGTTTTAAAAATATCATTAGAGTGCACTAATTACGTGTTTAAGAGCTAACCCATGGATATATGACTAATTTTATAACCAGTTAAACAAAAATTACTAACCTACCCATGAGTTAATCAATTCCCTCAAAAACCTAAATAAGCTCGCCTGCTTTTCACTTGCATTTGCTCCTCAAATACTTCGTATAAATGTATACCCAGAAAGATAAAACATATCACTATTATTAACAACCCTACACCTCATTACCATTATCAGAACTAGCATCACCAAAAATGGACTACGAAAATAGTGGAAGAATGAAAAGGAAATAAAAGTAGTCTGGTTGGGTTCTGAATTCTGTTTTCTGAAGAACTAATGGTTCTGAATCCACACTTGGGCTGCTCGTGGGAGAAATGGAATAAATAATAAGACCAACAGAATCAGAGTTCTACTAATATGGGTCTATTAATTGAGAATAGTTTCCAGTTTATGCCAATGGAGCACTAGTCATTAAGTTTCTTAAAAAAAAGCATGTCATACAATGACGATACCACCTTAATCTCCACGGTTATGCATGGTGCTCCTTTAGAAGCGCCTATAACAAGACCAAACAGAATGATTAAGAAGGAAATTTAAACAAGCAATGATCAGTTCCTTTTTCTTAAATAAAACATTGTACGACACATTGTTTTCTACTTTGCTCTATACAAGTAAGCACAAAGCAAACAAGTAGCAACTTAATAAATACTACAGTGAAAAATCATGCAGTTTAACAATATAACAAAATATTGGAATACATTCGTATTAGAGGTCGTTGGACAACTTTTGGGCTCGCTTACATTAAGGAAACTCAGGTCTGTGTAAATAACAGAAGGAAATTGATATACTTGGACAACTTTTCCTAGCGTTACTAACCTTGGGGGAATACTGAATGATCTGACATTAGCATCACTGCATCACAGAATACTGAATTGTTTTTATGTTTTCTGTCCCCTTATTTAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

mRNA sequence

TTTTAGAAGAATTTGAGGTAGTACCGTAGTAGTCATACTTGTCAGTCACCGGCTCAACTCACTAGTGAGTAGTGACGAGCTCACTGCCACCTGCGTACCCGAATCCCGATAAACATCTATCCAGAAAATGGGAAGTTGAACACAACGAAACCAGCCACCCAAATATTTTGTCACCAATTCACCATTTACAACAACATAGTTGGAGAGTGAAAGAGCAGATCTAGAGAATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

Coding sequence (CDS)

ATGGAGACTCTTTCAAGAGGAAGCTGCCCACTTTTTATGAACAGCTTCCTATTTGCCAGAAATCCAAATTCAAATCAAAGTAGTTGCACTATATTGTTTCCCAAATCCTCTTCACTCAGAAGTCCCACTGTTTCAGTCCTCAAATCCCCTTCTTCAGCTTCTGATCATTGCAGATCTGCCAAGCATGCTTTTTGTATGGCTGTTGGTATCATATTGTACAACATTCCTTGTTACTGTGGAATTTTATGA

Protein sequence

METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASDHCRSAKHAFCMAVGIILYNIPCYCGIL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20605	Spo20605	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20605.1	Spo20605.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20605.1.exon.1	Spo20605.1.exon.1	exon
Spo20605.1.exon.2	Spo20605.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20605.1.utr5p.1	Spo20605.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20605.1.CDS.1	Spo20605.1.CDS.1	CDS
Spo20605.1.CDS.2	Spo20605.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo20605.1 vs. NCBI nr
Match: gi|902203624|gb|KNA14630.1| (hypothetical protein SOVF_105580 [Spinacia oleracea])

HSP 1 Score: 105.1 bits (261), Expect = 5.800e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1

		  
Query: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASD 56
          METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSA++
Sbjct: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSATE 55

[Close]

BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R555_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_105580 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.000e-20
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 1

		  
Query: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSASD 56
          METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSA++
Sbjct: 1  METLSRGSCPLFMNSFLFARNPNSNQSSCTILFPKSSSLRSPTVSVLKSPSSATE 55

The following BLAST results are available for this feature:

BLAST of Spo20605.1 vs. NCBI nr
BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
BLAST of Spo20605.1 vs. ExPASy Swiss-Prot
BLAST of Spo20605.1 vs. TAIR (Arabidopsis)

BLAST of Spo20605.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902203624\|gb\|KNA14630.1\|	5.8e-20	96.3	hypothetical protein SOVF_1055...	[more]

BLAST of Spo20605.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R555_SPIOL	4.0e-20	96.3	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo20605.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo20605.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description