Spo20846.1 (mRNA) | SpinachBase

Overview


Name	Spo20846.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase II subunit, putative
Location	Super_scaffold_120 : 1644470 .. 1649393 (+)
Sequence length	1519

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTTTGTCATTACCTCTAAAATTATCCCTAGAATCCAACAGTCAGGCAAAGGGTTTTAGACTTTTAGCTCATTTCTCTCTCCTCAAAGAAAAACCCTGCAATCGAAAACTCAGAAACCCTAAAAATGGAGGGAGCATCCTACCAACGGTTCCCCGAAATCAAAATCAGAGAAATGCGTGATGATTTCATGAAATTCGAGCTCCGCAAAACCGACTCCAGCATGGCTAACGCTCTCCGCCGTGTAATGATAGCCGAGGTGCCGACGGTCGCGGTCGATCTTGTCGAAATCGAAGTTAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCACCGCCTCGGCCTCATCCCTCTTACTAGTGAACGTGCCATGGCCATGCGGTTTTCGCGTGACTGCGACGCCTGCGACGGTGACGGACAGTGTGAGTATTGCTCGGTGGAGTTTCATCTTCGGGCCAAGTGTATCGGCGATCAAACCCTAGATGTTACTAGCAAGGATTTGTTGAGCTCTGACCATACTGTTACTCCGGTTGATTTCTCTGAGGCTCCTGCTACTGAAGATGCTACTGATAACAGGTATAACTTCGTCAAATTTCGTCTGAGTTTTTTCGTTTTGTTTTAATTTATGTTGGTTTCTTTATTTTTGTTAAATTTCCCCTCTTTCACGGTTTTGCATCTTAGAAATTGTTAGGGTTTATGATTTTCTGTGTATCTATTGTTCAGTACTTTCTTATCCTGGGTTAGAATTCAAATTGATGACAGTGCTACATTTTTTATTATCCTTCTGTATTGGACTATTTGGGTGTTCCTATTATTATTGTGGAATTTCTAAGATCTTGTTTGCAGTGAGATTTTGTAAATCTACTTTGTAAATCTACTAGTTTGGAATCCATGCATACTTTTGGAAGTGAGAATTAGTTTGTTTTTATTAATACTAGGTTTTGGTGTTTAAAGTTGTCAACTTTGGCTTATTATTAGGAAAATGAAGGCCAGGTATAAGAGGAAAGTGGTAATGAACTGGCGAAGGAGAAAGGGGGAATTTGTGGAACAGGGTAGAAAAGCGGGGTTTGTTTTCTTAGCCATTTCCTTTGGTTGGATTATAGTAACAGGGATATGTTTTGTGACGTATTGAGTCCCATTTGAGTAAGGTAACCATAGGCTATGGCGAATGGGATTTGGTTTGATCTTATGGGATACATTGAAATATTGAACCACAAATTCGAGGTAAAAAATGTTTCTTTTCTTCTATTTGAATTTTGTGTATGGATCAATATTTGTAAGAAGCTTGAAACTGAACAAATTTGTTCGTCTGAGAGAGGGGGTAAAAAGAGAGAACTGGTATGGGCAAGTGTTGTACAGAGTATGGCACTTATGCAACATGCCATACTCTAATATGATTGCAAGAATTATCTAGAGTTGTCTTTGACTTTTAGTTTGTATGTAAGTCGCACATGTGTTTTACCTGGTTTACCTTACCTCTAAAGGCTCAAAAAAACTTGAGATGTTCTGGATCACCCTAAAGAGATTACTTTTGAAGAATAGACTTGGATCCACTGTTGATGATAGCATTAAAACAACGGCATTTAACTTAAATGACAAATTCCTCCTAAGCACTAGAATTTTCCCTTGATAGGCTATAAGGAGATTTAGAATATCACAGCCATGGCCTATACCTTCACTGGACTTCTTAGCTAGGAACTATTTTTCATAATTTTAATAGGGGTTATCTATGGGTGTGTTTTATAGAGATGCTAAAAGCTTGAATTGGGACAAATACTTAGTTCCTGAGAGAGACGGAGAGAGGTATAAGTAGCAGGGGATATACAGATAGAGTTATTTGTTTGGATTTGTAAGTCTGTTTGTATATTAAAAAAACGCTATTGGATCTGTTGATTGTGATCTGTTTTGGTACTGCTTATATACATCATGCAATGCTTGTCCAGGACTCCAGAGTCCAGAAAGTCCAAACTCTAGATTTAGCTGTAATAACAACTGGTTTGGATCTATGTTTCAGAAGGTGTGAAACATTGATTATCTTACCATCTTAAAAGAGTTAATACTCATAAAAGATGAGATGTTCTGGGAACCCTCAAAGAAATAATTTTTGAAGAAGGGACATGTTTATCAACCGTAAATGACAGCTTTGAGACAATCCCTTCGAATGCAAATGACAAATAGCATCGTCTTGTGTAGCTCTGTAATTGATGATGTCCTATACTTCCATAAATGAAAAATATGTGGACTTTAAGTGATATGGAACAACATGATTTCTTTCTTTTTTCATTATCATTATCATTACCCCATTGCCTCATAGAGGCTCCCGCAAGAAGCGAGATAAGGGGGAGTCGGACGTACGCAACCTTACCCCTGCAATTGCTTTCCAATTGACCCAAAATCGATAACGGGACGACCATCTTCTACTTCATGGATAGGAAGCGAATAGGTTTTAAGAGCCATTTTGATTTAGTCCATACATCCCAAAAGAAAAAATGATTTAGTCCATTTTTATTTCTTTCTTTTTATTATAATAAAAACATACGTCAAGCTTAGATCCTGTCATTGGTGGGGACATGGGAGGATTTTTATTTCGATTTGTTCTACTTTTACAAATGCTGCTTTCTCTAATTGTTGTTTGGGCACTTCTGTTTGCTTTGGTGTCACGCAGGGGGATCATAATCGTGAAGTTACGTAAAGGTCAAGAGTTGAAGCTTAGAGCAATAGCTAGAAAAGGCATAGGGAAAGACCACGCTAAATGGTCTCCTGCTGCAACAGTCACCTTTATGTATGAACCGGAGATTCTTATCAACGATGATTTGATGGAATCCTTGTCACTAGAACAAAAGAAAGATTGGGTTGAAAGCAGTCCTACCAAAGTCTTTGACATTGATCCTAATACTCAGCAGGTTGGTAATATCTCATATGTACGGGTTTTGTTGTATCACTGTTGAAATTGTGTGATAAGTTGTGTCTCTGGCCTTTAGATGTAAAAAAATTTCAAGGCAAATTTTGCGTGTAGATTATTTCAGAAGGTCATAAATAGGTTGAATAGGGTTATCCTGAGAGCAAGCAGAGAGAAAATACTAACTCCTCACTCCTTGCGGAATAGGCATTACTAGATAGAAAAGAATACCATTTTTTTTTGTTGGTAATGAATTATTACATGCTGCAACAACTTTGGCCTAAATTAGTTGTTTGGGCTGCACATGCGTACTAATAGGTTTTGTGAAAGCGTGATTTGATTGAAATATTTTAGTTGGCATTTGTTCGCTTGTTTATCATTTATTTGATTGGATTTTAAGACTACTTGATTGGATGTTATGACTGCTGTGAAGAAAGAAGATGTTATATTTTTGTTTCTTGATTTTGCTAGCATATTTCTATGATCCTGTTGATTTACCACTAGTATCAAAAGAAATTCATTTTGCATAGTCGTGTTCTTATTATATCCTGTGGTTCTCAAATGAGTAAATGACTTATATCATAGTCTACAATACTGTGTTATCTCACATAGTTTTCATCTCAACTTTGAAGCCCCTTATTTTCTGTTAGTTAATATATGATCGTGTTTCCCAGTTTCCCTCCGCCATTCAATACATGGCAAGCCAAGTAACTAGGTTAACTGTTTTAAAAAAAAATTATCACATAATATATTCATGTGTCTGCTATATGTATGGTTGTGCACTTGTACCCTGATAAATAGGTCTCTGGATCGAGATGTGTGCACAACAGTCAACAGCACAGGTAATATTGGGGAAGGGATTCCCCGAAGAGTTGATAAAGTTTAGTATATAAGCTAACATATCTAATCTTAAAGTGGGTTGTAGAAGGGTAATGTTTGATCAAGTGGGTCAGTTGGAACAAGATGTTATAACTTTGAGGTGATATCTGACTATGTTTAGATCTTTAAAGCCAAACTTGGTAGCATTTTTGGTTGTGTCGGTTTTCATACTTAAGACTCTATGCTTGTATTTCAGATTTTAAGAAACTGAACATTATATATCTTTGTCGTGCCCCATACAGGTTGTTGTAGTTGATCCTGAGGCCTATACCTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGGAAGTCGGGACTTGTTGAGATTTACCCAAAAGAGGACAGTTTTATATTTACTGTTGAATCTACTGGTGCAGTCAAGGCTCCTCTACTTTTGCTTAATGCAATTGAAGTCCTGAAGCAGAAGTTAGATGCAGTTCGATTGCCTGAAGACTCTGTAGATGCTGATGATTTTGGAGAATTAGGTGCTCACATGCGAGGAGGCTGATTAGCTTTGCCTAATTTACTCATGTATGATGAGACAATCCTCAACTTGTTAATTACCTGGTGGTTGTTATTCTCTTGTCTCTTATTGCATCCCTAACTTGAAAGTTGAAAGTGGCCTGCTGCTATTTTGTCCAAAACTAACAATCACTGGCATAGACCACTCCTGTATAGACTATCTTCCGTGATGCATCATCTGATTGACCGTTTACTTTAACTGGTGCAGTTTTTGTTGTGTAATTCAAGCTGAAAAACAGAATCCAAAGTTTTGACAAACTATATAATGCCTTGTCATTGCTCGTATCAACACCGTGATAAGCTTGTCTCAGTCCTTACAGCGCGTTTGATGCTACTTGGTTATATTTACTCCAAATTATCTTGCTACATTTTATTTGTAAAGTTGCAGTATCGTACCTCTATTTCAGGACTATATTTTGGAATGTGTTCATGTTGTAAGCTTGAAACTACTAAAATCCTGAGTTAAGTATATTGTTGGGTGAAACTCAATCACTGGTAGAAATTATATTGGTTGAAATGTTTGAGTTTAAGTTTCCTGATGATGGAATTAGATTCATTAATCTTCCAAATTTGAAGAAACTCCATATATCAAAGATTCGCACCCTCCCTTGACGGATACCC

mRNA sequence

CAAGTTTGTCATTACCTCTAAAATTATCCCTAGAATCCAACAGTCAGGCAAAGGGTTTTAGACTTTTAGCTCATTTCTCTCTCCTCAAAGAAAAACCCTGCAATCGAAAACTCAGAAACCCTAAAAATGGAGGGAGCATCCTACCAACGGTTCCCCGAAATCAAAATCAGAGAAATGCGTGATGATTTCATGAAATTCGAGCTCCGCAAAACCGACTCCAGCATGGCTAACGCTCTCCGCCGTGTAATGATAGCCGAGGTGCCGACGGTCGCGGTCGATCTTGTCGAAATCGAAGTTAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCACCGCCTCGGCCTCATCCCTCTTACTAGTGAACGTGCCATGGCCATGCGGTTTTCGCGTGACTGCGACGCCTGCGACGGTGACGGACAGTGTGAGTATTGCTCGGTGGAGTTTCATCTTCGGGCCAAGTGTATCGGCGATCAAACCCTAGATGTTACTAGCAAGGATTTGTTGAGCTCTGACCATACTGTTACTCCGGTTGATTTCTCTGAGGCTCCTGCTACTGAAGATGCTACTGATAACAGGGGGATCATAATCGTGAAGTTACGTAAAGGTCAAGAGTTGAAGCTTAGAGCAATAGCTAGAAAAGGCATAGGGAAAGACCACGCTAAATGGTCTCCTGCTGCAACAGTCACCTTTATGTATGAACCGGAGATTCTTATCAACGATGATTTGATGGAATCCTTGTCACTAGAACAAAAGAAAGATTGGGTTGAAAGCAGTCCTACCAAAGTCTTTGACATTGATCCTAATACTCAGCAGGTTGTTGTAGTTGATCCTGAGGCCTATACCTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGGAAGTCGGGACTTGTTGAGATTTACCCAAAAGAGGACAGTTTTATATTTACTGTTGAATCTACTGGTGCAGTCAAGGCTCCTCTACTTTTGCTTAATGCAATTGAAGTCCTGAAGCAGAAGTTAGATGCAGTTCGATTGCCTGAAGACTCTGTAGATGCTGATGATTTTGGAGAATTAGGTGCTCACATGCGAGGAGGCTGATTAGCTTTGCCTAATTTACTCATTTTTTGTTGTGTAATTCAAGCTGAAAAACAGAATCCAAAGTTTTGACAAACTATATAATGCCTTGTCATTGCTCGTATCAACACCGTGATAAGCTTGTCTCAGTCCTTACAGCGCGTTTGATGCTACTTGGTTATATTTACTCCAAATTATCTTGCTACATTTTATTTGTAAAGTTGCAGTATCGTACCTCTATTTCAGGACTATATTTTGGAATGTGTTCATGTTGTAAGCTTGAAACTACTAAAATCCTGAGTTAAGTATATTGTTGGGTGAAACTCAATCACTGGTAGAAATTATATTGGTTGAAATGTTTGAGTTTAAGTTTCCTGATGATGGAATTAGATTCATTAATCTTCCAAATTTGAAGAAACTCCATATATCAAAGATTCGCACCCTCCCTTGACGGATACCC

Coding sequence (CDS)

ATGGAGGGAGCATCCTACCAACGGTTCCCCGAAATCAAAATCAGAGAAATGCGTGATGATTTCATGAAATTCGAGCTCCGCAAAACCGACTCCAGCATGGCTAACGCTCTCCGCCGTGTAATGATAGCCGAGGTGCCGACGGTCGCGGTCGATCTTGTCGAAATCGAAGTTAACTCTTCTGTTCTCAACGACGAGTTCATCGCTCACCGCCTCGGCCTCATCCCTCTTACTAGTGAACGTGCCATGGCCATGCGGTTTTCGCGTGACTGCGACGCCTGCGACGGTGACGGACAGTGTGAGTATTGCTCGGTGGAGTTTCATCTTCGGGCCAAGTGTATCGGCGATCAAACCCTAGATGTTACTAGCAAGGATTTGTTGAGCTCTGACCATACTGTTACTCCGGTTGATTTCTCTGAGGCTCCTGCTACTGAAGATGCTACTGATAACAGGGGGATCATAATCGTGAAGTTACGTAAAGGTCAAGAGTTGAAGCTTAGAGCAATAGCTAGAAAAGGCATAGGGAAAGACCACGCTAAATGGTCTCCTGCTGCAACAGTCACCTTTATGTATGAACCGGAGATTCTTATCAACGATGATTTGATGGAATCCTTGTCACTAGAACAAAAGAAAGATTGGGTTGAAAGCAGTCCTACCAAAGTCTTTGACATTGATCCTAATACTCAGCAGGTTGTTGTAGTTGATCCTGAGGCCTATACCTATGATGATGAGGTGATTAAGAAAGCTGAAGCTATGGGGAAGTCGGGACTTGTTGAGATTTACCCAAAAGAGGACAGTTTTATATTTACTGTTGAATCTACTGGTGCAGTCAAGGCTCCTCTACTTTTGCTTAATGCAATTGAAGTCCTGAAGCAGAAGTTAGATGCAGTTCGATTGCCTGAAGACTCTGTAGATGCTGATGATTTTGGAGAATTAGGTGCTCACATGCGAGGAGGCTGA

Protein sequence

MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPEDSVDADDFGELGAHMRGG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20846	Spo20846	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20846.1	Spo20846.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20846.1.exon.1	Spo20846.1.exon.1	exon
Spo20846.1.exon.2	Spo20846.1.exon.2	exon
Spo20846.1.exon.3	Spo20846.1.exon.3	exon
Spo20846.1.exon.4	Spo20846.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20846.1.utr5p.1	Spo20846.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20846.1.CDS.1	Spo20846.1.CDS.1	CDS
Spo20846.1.CDS.2	Spo20846.1.CDS.2	CDS
Spo20846.1.CDS.3	Spo20846.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20846.1.utr3p.1	Spo20846.1.utr3p.1	three_prime_UTR
Spo20846.1.utr3p.2	Spo20846.1.utr3p.2	three_prime_UTR

Homology

[Close]

BLAST of Spo20846.1 vs. NCBI nr
Match: gi|902229643|gb|KNA21560.1| (hypothetical protein SOVF_042120 [Spinacia oleracea])

HSP 1 Score: 624.4 bits (1609), Expect = 1.100e-175
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE
Sbjct: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300

Query: 301 DSVDADDFGELGAHMRGG 319
           DSVDADDFGELGAHMRGG
Sbjct: 301 DSVDADDFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. NCBI nr
Match: gi|731360255|ref|XP_010691712.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 586.3 bits (1510), Expect = 3.300e-164
Identity = 293/318 (92.14%), Postives = 309/318 (97.17%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP IKIREMRDDF+KFELR TDSS+ANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 1   MEGVSYQRFPRIKIREMRDDFLKFELRDTDSSVANALRRVMIAEVPTVAVDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDLLSSDHTVTP+DFS++PA +DA+DNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVTPIDFSDSPAADDASDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEILIN+DLME+L+LEQKK WVESSPTKVFDIDPNTQQVV+VDPEAY Y
Sbjct: 181 SPAATVTFMYEPEILINEDLMETLTLEQKKAWVESSPTKVFDIDPNTQQVVIVDPEAYAY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEVIKKAEAMGK GLVEIYPKEDSFIFTVESTGAVKA  L+LNAIE+LKQKLDAVRLPE
Sbjct: 241 DDEVIKKAEAMGKPGLVEIYPKEDSFIFTVESTGAVKAYQLVLNAIEILKQKLDAVRLPE 300

Query: 301 DSVDADDFGELGAHMRGG 319
           D+VDADDFGELGAHMRGG
Sbjct: 301 DTVDADDFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. NCBI nr
Match: gi|870848875|gb|KMT01164.1| (hypothetical protein BVRB_9g224160 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 586.3 bits (1510), Expect = 3.300e-164
Identity = 293/318 (92.14%), Postives = 309/318 (97.17%), Query Frame = 1


		  
Query: 1    MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
            MEG SYQRFP IKIREMRDDF+KFELR TDSS+ANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 784  MEGVSYQRFPRIKIREMRDDFLKFELRDTDSSVANALRRVMIAEVPTVAVDLVEIEVNSS 843

Query: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
            VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 844  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 903

Query: 121  TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
            TSKDLLSSDHTVTP+DFS++PA +DA+DNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 904  TSKDLLSSDHTVTPIDFSDSPAADDASDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 963

Query: 181  SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
            SPAATVTFMYEPEILIN+DLME+L+LEQKK WVESSPTKVFDIDPNTQQVV+VDPEAY Y
Sbjct: 964  SPAATVTFMYEPEILINEDLMETLTLEQKKAWVESSPTKVFDIDPNTQQVVIVDPEAYAY 1023

Query: 241  DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
            DDEVIKKAEAMGK GLVEIYPKEDSFIFTVESTGAVKA  L+LNAIE+LKQKLDAVRLPE
Sbjct: 1024 DDEVIKKAEAMGKPGLVEIYPKEDSFIFTVESTGAVKAYQLVLNAIEILKQKLDAVRLPE 1083

Query: 301  DSVDADDFGELGAHMRGG 319
            D+VDADDFGELGAHMRGG
Sbjct: 1084 DTVDADDFGELGAHMRGG 1101

[Close]

BLAST of Spo20846.1 vs. NCBI nr
Match: gi|255555327|ref|XP_002518700.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Ricinus communis])

HSP 1 Score: 537.7 bits (1384), Expect = 1.300e-149
Identity = 273/319 (85.58%), Postives = 298/319 (93.42%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFP IKIRE++DD+ KFELR TD+SMANALRRVMIAEVPTVA+DLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDFS++    D+++ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGY-DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I IN+DLMESLSLE+K+ WVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAE+MGK GLV I  KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. NCBI nr
Match: gi|823203502|ref|XP_012436162.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 3 [Gossypium raimondii])

HSP 1 Score: 536.2 bits (1380), Expect = 3.900e-149
Identity = 272/319 (85.27%), Postives = 299/319 (93.73%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP++KIRE++DD+ KFELR TD+SMANALRRVMI+EVPT+A+DLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDF++  A  D+T+ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFTDN-AGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEI IN+DLMESL+LE+K  +VESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEV+KKAEAMGK GLVEIY KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPV4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042120 PE=4 SV=1)

HSP 1 Score: 624.4 bits (1609), Expect = 7.600e-176
Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE
Sbjct: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300

Query: 301 DSVDADDFGELGAHMRGG 319
           DSVDADDFGELGAHMRGG
Sbjct: 301 DSVDADDFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g224160 PE=4 SV=1)

HSP 1 Score: 586.3 bits (1510), Expect = 2.300e-164
Identity = 293/318 (92.14%), Postives = 309/318 (97.17%), Query Frame = 1


		  
Query: 1    MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
            MEG SYQRFP IKIREMRDDF+KFELR TDSS+ANALRRVMIAEVPTVAVDLVEIEVNSS
Sbjct: 784  MEGVSYQRFPRIKIREMRDDFLKFELRDTDSSVANALRRVMIAEVPTVAVDLVEIEVNSS 843

Query: 61   VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
            VLNDEFIAHRLGLIPLTS+RAM+MRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV
Sbjct: 844  VLNDEFIAHRLGLIPLTSDRAMSMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 903

Query: 121  TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
            TSKDLLSSDHTVTP+DFS++PA +DA+DNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW
Sbjct: 904  TSKDLLSSDHTVTPIDFSDSPAADDASDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 963

Query: 181  SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
            SPAATVTFMYEPEILIN+DLME+L+LEQKK WVESSPTKVFDIDPNTQQVV+VDPEAY Y
Sbjct: 964  SPAATVTFMYEPEILINEDLMETLTLEQKKAWVESSPTKVFDIDPNTQQVVIVDPEAYAY 1023

Query: 241  DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
            DDEVIKKAEAMGK GLVEIYPKEDSFIFTVESTGAVKA  L+LNAIE+LKQKLDAVRLPE
Sbjct: 1024 DDEVIKKAEAMGKPGLVEIYPKEDSFIFTVESTGAVKAYQLVLNAIEILKQKLDAVRLPE 1083

Query: 301  DSVDADDFGELGAHMRGG 319
            D+VDADDFGELGAHMRGG
Sbjct: 1084 DTVDADDFGELGAHMRGG 1101

[Close]

BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: B9RYB6_RICCO (DNA-directed RNA polymerase II subunit, putative OS=Ricinus communis GN=RCOM_0811900 PE=4 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 9.400e-150
Identity = 273/319 (85.58%), Postives = 298/319 (93.42%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEGASYQRFP IKIRE++DD+ KFELR TD+SMANALRRVMIAEVPTVA+DLVEIEVNSS
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQC+YCSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDFS++    D+++ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFSDSSGY-DSSEQRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I IN+DLMESLSLE+K+ WVESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIHINEDLMESLSLEEKQSWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAE+MGK GLV I  KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DEEVIKKAESMGKPGLVNIQAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0D2SZ13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G023500 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 2.700e-149
Identity = 272/319 (85.27%), Postives = 299/319 (93.73%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP++KIRE++DD+ KFELR TD+SMANALRRVMI+EVPT+A+DLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDF++  A  D+T+ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFTDN-AGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEI IN+DLMESL+LE+K  +VESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEV+KKAEAMGK GLVEIY KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MXX2_GOSAR (DNA-directed RNA polymerase II subunit RPB3-A-like protein OS=Gossypium arboreum GN=F383_29872 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 2.700e-149
Identity = 272/319 (85.27%), Postives = 299/319 (93.73%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           MEG SYQRFP++KIRE++DD+ KFELR TD+SMANALRRVMI+EVPT+A+DLVEIEVNSS
Sbjct: 1   MEGISYQRFPKVKIRELKDDYAKFELRDTDASMANALRRVMISEVPTIAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEFHLRAKCI DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCISDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TSKDL SSDHTV PVDF++  A  D+T+ RGIIIVKLR+GQEL+LRAIARKGIGKDHAKW
Sbjct: 121 TSKDLYSSDHTVVPVDFTDN-AGYDSTEPRGIIIVKLRRGQELRLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEPEI IN+DLMESL+LE+K  +VESSPTKVFDIDPNTQQVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPEIHINEDLMESLTLEEKLSFVESSPTKVFDIDPNTQQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           DDEV+KKAEAMGK GLVEIY KEDSFIFTVESTGA+KA  L+LNAIE+LKQKLDAVRL E
Sbjct: 241 DDEVLKKAEAMGKPGLVEIYAKEDSFIFTVESTGAIKASQLVLNAIEILKQKLDAVRLSE 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 318

[Close]

BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: NRPB3_ARATH (DNA-directed RNA polymerases II, IV and V subunit 3 OS=Arabidopsis thaliana GN=NRPB3 PE=1 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 5.500e-143
Identity = 254/319 (79.62%), Postives = 296/319 (92.79%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+GA+YQRFP+IKIRE++DD+ KFELR+TD SMANALRRVMI+EVPTVA+DLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +  D+++++GIIIVKLR+GQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I+IN+D+M++LS E+K D +ESSPTKVF +DP T+QVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI PK+DSFIFTVESTGAVKA  L+LNAI++LKQKLDAVRL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319

[Close]

BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: RPD3B_ARATH (DNA-directed RNA polymerases IV and V subunit 3B OS=Arabidopsis thaliana GN=NRPD3B PE=1 SV=2)

HSP 1 Score: 470.7 bits (1210), Expect = 1.300e-131
Identity = 232/319 (72.73%), Postives = 284/319 (89.03%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+G +YQRFP +KIRE++DD+ KFELR+TD SMANALRRVMI+EVPT+A+ LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIA RL LIPLTSERAM+MRF +DC+ C+GD  CE+CSVEF L AKC+ DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +T D+++++GIII KLR+GQELKL+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVT+MYEP+I+IN+++M +L+ E+K D +ESSPTKVF IDP T QVVVVDPEAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI+PK DSF+FTVESTGA+KA  L+LNAI++LKQKLDA+RL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           ++V+ADD FGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319

[Close]

BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: RPB3_DICDI (DNA-directed RNA polymerase II subunit rpb3 OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 9.500e-71
Identity = 145/292 (49.66%), Postives = 200/292 (68.49%), Query Frame = 1


		  
Query: 8   RFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFI 67
           R PE++I E+++D + F L  TD S+ANALRRVMIAEVPT+ +DLVE E N+SVL DEFI
Sbjct: 10  RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69

Query: 68  AHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKDLLS 127
           AHRLGLIPL S+      ++RDC   D   +C+ CSVE  L  KC  ++  DVTS DLLS
Sbjct: 70  AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 129

Query: 128 SDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVT 187
            +  V PV    +     +   + I IVKLR+GQE+KLRAIA+KG+GK+HAKWSP+   T
Sbjct: 130 QNSAVIPV----SSQVTSSNSEQEIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVAT 189

Query: 188 FMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDP--NTQQVVVVDPEAYTYDDEVI 247
           + ++P I++N + ++ L+ +QK++WV S PTKV+   P  +TQQV + DP    Y  E  
Sbjct: 190 YQFQPIIVLNQNRIDELTDQQKEEWVGSCPTKVYSYSPHQSTQQVTIEDPLRCVYCLECK 249

Query: 248 KKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVR 298
           KKAE+ GK  LV +  K+D FIFTVES+GA+K   ++L AI+++K+KL  ++
Sbjct: 250 KKAESFGKPDLVHLEQKQDKFIFTVESSGALKPEDIVLYAIQIIKRKLTDIQ 294

[Close]

BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: CNJC_TETTH (Conjugation stage-specific protein OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.300e-46
Identity = 117/296 (39.53%), Postives = 173/296 (58.45%), Query Frame = 1


		  
Query: 23  KFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFIAHRLGLIPLTSERAM 82
           +F L   D S+AN+LRR+++AE+ T+A+  V++  N+S L DE+IAHRLGLIPL S +  
Sbjct: 17  EFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYIAHRLGLIPLNSAKVD 76

Query: 83  AMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKDLLS-SDHT----VTPVDF 142
              +  +C+     G+C+ C++ F LR     ++ L+VTS DL    DHT    V P+  
Sbjct: 77  DYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQRQDHTDEDAVRPIKV 136

Query: 143 SEAPATEDATDNR-GIIIVKLRKGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPEILI 202
                 E       GI I+KL KGQ++     A+KGIGK H+KW+P    TF  EPEI+ 
Sbjct: 137 YSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPEIIF 196

Query: 203 NDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDE-VIKKAEAMGKSG 262
           + ++ ++L +EQKK  V + PTKVF I+P+T  + V D     Y +E V K AE   K  
Sbjct: 197 DQEI-QNLDIEQKKALVNACPTKVFGINPHTNTLEVQDHMKCMYCEECVYKCAEDFQKPK 256

Query: 263 LVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVR--LPEDSVDADDFG 310
           L++I  K+D F F VE+TG +K   +L      L+QKLD +R  + E+S +  ++G
Sbjct: 257 LIKIDHKKDKFFFKVETTGVMKPVEVLRRGFSTLRQKLDFMREQIQENSNNQFEYG 308

[Close]

BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Match: RPB3_BOVIN (DNA-directed RNA polymerase II subunit RPB3 OS=Bos taurus GN=POLR2C PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.100e-46
Identity = 116/290 (40.00%), Postives = 169/290 (58.28%), Query Frame = 1


		  
Query: 6   YQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDE 65
           Y   P ++I E+ D+ +KF +  TD ++AN++RRV IAEVP +A+D V+I+ NSSVL+DE
Sbjct: 3   YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62

Query: 66  FIAHRLGLIPLTSERAM-AMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDVTSKD 125
           FIAHRLGLIPLTS+  +  +++SRDC     +  C  CSVEF L  +C  DQT  VTS+D
Sbjct: 63  FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 122

Query: 126 LLSSDHTVTPV-DFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKWSPA 185
           L+S+   V PV   +      D  +   I+IVKLRKGQEL+LRA A+KG GK+HAKW+P 
Sbjct: 123 LISNSPRVIPVTSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPT 182

Query: 186 ATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTYDDE 245
           A V F Y+P     D+ +      + ++W +S   +  ++D +  Q    DP        
Sbjct: 183 AGVAFEYDP-----DNALRHTVYPKPEEWPKS---EYSELDEDESQ-APYDPNG------ 242

Query: 246 VIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKL 294
                             K + F + VES G+++   ++L+A+  LK+KL
Sbjct: 243 ------------------KPERFYYNVESCGSLRPETIVLSALSGLKKKL 256

[Close]

BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT2G15430.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 508.4 bits (1308), Expect = 3.100e-144
Identity = 254/319 (79.62%), Postives = 296/319 (92.79%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+GA+YQRFP+IKIRE++DD+ KFELR+TD SMANALRRVMI+EVPTVA+DLVEIEVNSS
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIAHRLGLIPLTSERAM+MRFSRDCDACDGDGQCE+CSVEF L +KC+ DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +  D+++++GIIIVKLR+GQELKLRAIARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTIDSSVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVTFMYEP+I+IN+D+M++LS E+K D +ESSPTKVF +DP T+QVVVVDPEAYTY
Sbjct: 181 SPAATVTFMYEPDIIINEDMMDTLSDEEKIDLIESSPTKVFGMDPVTRQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI PK+DSFIFTVESTGAVKA  L+LNAI++LKQKLDAVRL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEISPKDDSFIFTVESTGAVKASQLVLNAIDLLKQKLDAVRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           D+V+ADD FGELGAHMRGG
Sbjct: 301 DTVEADDQFGELGAHMRGG 319

[Close]

BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT2G15400.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 470.7 bits (1210), Expect = 7.100e-133
Identity = 232/319 (72.73%), Postives = 284/319 (89.03%), Query Frame = 1


		  
Query: 1   MEGASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSS 60
           M+G +YQRFP +KIRE++DD+ KFELR+TD SMANALRRVMI+EVPT+A+ LV+IEVNSS
Sbjct: 1   MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60

Query: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQTLDV 120
           VLNDEFIA RL LIPLTSERAM+MRF +DC+ C+GD  CE+CSVEF L AKC+ DQTLDV
Sbjct: 61  VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120

Query: 121 TSKDLLSSDHTVTPVDFSEAPATEDATDNRGIIIVKLRKGQELKLRAIARKGIGKDHAKW 180
           TS+DL S+D TVTPVDF+   +T D+++++GIII KLR+GQELKL+A+ARKGIGKDHAKW
Sbjct: 121 TSRDLYSADPTVTPVDFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKGIGKDHAKW 180

Query: 181 SPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQQVVVVDPEAYTY 240
           SPAATVT+MYEP+I+IN+++M +L+ E+K D +ESSPTKVF IDP T QVVVVDPEAYTY
Sbjct: 181 SPAATVTYMYEPDIIINEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTY 240

Query: 241 DDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNAIEVLKQKLDAVRLPE 300
           D+EVIKKAEAMGK GL+EI+PK DSF+FTVESTGA+KA  L+LNAI++LKQKLDA+RL +
Sbjct: 241 DEEVIKKAEAMGKPGLIEIHPKHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIRLSD 300

Query: 301 DSVDADD-FGELGAHMRGG 319
           ++V+ADD FGELGAHMR G
Sbjct: 301 NTVEADDQFGELGAHMREG 319

[Close]

BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT1G60850.2 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 131.3 bits (329), Expect = 1.000e-30
Identity = 94/319 (29.47%), Postives = 163/319 (51.10%), Query Frame = 1


		  
Query: 3   GASYQRFPEIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVL 62
           G  Y  F ++ +  +    M+F++   D++ ANA RR++IAEVP++A++ V I  N+SV+
Sbjct: 68  GNFYDNF-KVDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVI 127

Query: 63  NDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCIGDQ-TLDVT 122
            DE +AHR+GLIP+ ++  +    S      + D   E  ++ F L  KC  ++  L V 
Sbjct: 128 IDEVLAHRMGLIPIAADPRLFEYLS------EHDQANEKNTIVFKLHVKCPKNRPRLKVL 187

Query: 123 SKDLL-----------SSDHTVTPVDFSEAPATEDATD----------NRGIIIVKLRKG 182
           + DL            S + T  P  ++    ++D+            +  I+I KL  G
Sbjct: 188 TSDLKWLPNGSELLRESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPG 247

Query: 183 QELKLRAIARKGIGKDHAKWSPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKV 242
           QE++L A A KGIGK HAKWSP  T  +   PE+++  ++ + L+    +  V   P  V
Sbjct: 248 QEIELEAHAVKGIGKTHAKWSPVGTAWYRMHPEVVLRGEVEDELA----ERLVNVCPQNV 307

Query: 243 FDID---PNTQQVVVVDPEAYTYDDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVK 297
           FDI+      ++  V  P   T   E ++  + +     V++   ++ FIF +ESTG++ 
Sbjct: 308 FDIEDMGKGKKRATVAQPRKCTLCKECVRDDDLVDH---VDLGSVKNHFIFNIESTGSLP 367

[Close]

BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Match: AT1G60620.1 (RNA polymerase I subunit 43)

HSP 1 Score: 129.4 bits (324), Expect = 3.900e-30
Identity = 94/311 (30.23%), Postives = 162/311 (52.09%), Query Frame = 1


		  
Query: 11  EIKIREMRDDFMKFELRKTDSSMANALRRVMIAEVPTVAVDLVEIEVNSSVLNDEFIAHR 70
           ++ +  + +  M F++    + +ANA RR+++AE+P++A++ V +  N+SV+ DE +AHR
Sbjct: 82  KVDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHR 141

Query: 71  LGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRAKCI-GDQTLDVTSKDLL--- 130
           LGLIP+ ++  +    S      + D   E  ++ F L  KC+ GD    V + +L    
Sbjct: 142 LGLIPIAADPRLFEYLS------ENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLP 201

Query: 131 --------SSDHTVTPVDFSEAPATEDA----TDN------RGIIIVKLRKGQELKLRAI 190
                   S   T TP  ++    ++D+     +N      + I+I KL  GQE++L A 
Sbjct: 202 NGSELIKESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAH 261

Query: 191 ARKGIGKDHAKWSPAATVTFMYEPEILINDDLMESLSLEQKKDWVESSPTKVFDIDPNTQ 250
           A KGIGK HAKWSP AT  +   PE++    L++    +  ++ V+  P KVFDI+   Q
Sbjct: 262 AVKGIGKTHAKWSPVATAWYRMLPEVV----LLKEFEGKHAEELVKVCPKKVFDIEDMGQ 321

Query: 251 ---QVVVVDPEAYTYDDEVIKKAEAMGKSGLVEIYPKEDSFIFTVESTGAVKAPLLLLNA 297
              +  V  P   +   E I+  + +     V++   ++ FIFT+ESTG+    +L   A
Sbjct: 322 GRKRATVARPRDCSLCRECIR--DGVEWEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEA 380

The following BLAST results are available for this feature:

BLAST of Spo20846.1 vs. NCBI nr
BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
BLAST of Spo20846.1 vs. TAIR (Arabidopsis)

BLAST of Spo20846.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902229643\|gb\|KNA21560.1\|	1.1e-175	100.	hypothetical protein SOVF_0421...	[more]
gi\|731360255\|ref\|XP_010691712.1\|	3.3e-164	92.1	PREDICTED: DNA-directed RNA po...	[more]
gi\|870848875\|gb\|KMT01164.1\|	3.3e-164	92.1	hypothetical protein BVRB_9g22...	[more]
gi\|255555327\|ref\|XP_002518700.1\|	1.3e-149	85.5	PREDICTED: DNA-directed RNA po...	[more]
gi\|823203502\|ref\|XP_012436162.1\|	3.9e-149	85.2	PREDICTED: DNA-directed RNA po...	[more]

BLAST of Spo20846.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RPV4_SPIOL	7.6e-176	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BMG1_BETVU	2.3e-164	92.1	Uncharacterized protein OS=Bet...	[more]
B9RYB6_RICCO	9.4e-150	85.5	DNA-directed RNA polymerase II...	[more]
A0A0D2SZ13_GOSRA	2.7e-149	85.2	Uncharacterized protein OS=Gos...	[more]
A0A0B0MXX2_GOSAR	2.7e-149	85.2	DNA-directed RNA polymerase II...	[more]

BLAST of Spo20846.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NRPB3_ARATH	5.5e-143	79.6	DNA-directed RNA polymerases I...	[more]
RPD3B_ARATH	1.3e-131	72.7	DNA-directed RNA polymerases I...	[more]
RPB3_DICDI	9.5e-71	49.6	DNA-directed RNA polymerase II...	[more]
CNJC_TETTH	1.3e-46	39.5	Conjugation stage-specific pro...	[more]
RPB3_BOVIN	2.1e-46	40.0	DNA-directed RNA polymerase II...	[more]

BLAST of Spo20846.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT2G15430.1	3.1e-144	79.6	DNA-directed RNA polymerase fa...	[more]
AT2G15400.1	7.1e-133	72.7	DNA-directed RNA polymerase fa...	[more]
AT1G60850.2	1.0e-30	29.4	DNA-directed RNA polymerase fa...	[more]
AT1G60620.1	3.9e-30	30.2	RNA polymerase I subunit 43	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001514	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	PROSITE	PS00446	RNA_POL_D_30KD	coord: 35..75 scor
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF01193	RNA_pol_L	coord: 23..293 score: 1.5
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	unknown	SSF55257	RBP11-like subunits of RNA polymerase	coord: 213..297 score: 1.47E-31coord: 10..51 score: 1.47
IPR011262	DNA-directed RNA polymerase, insert domain	GENE3D	2.170.120.12		coord: 47..178 score: 1.4
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 53..181 score: 7.2
IPR011262	DNA-directed RNA polymerase, insert domain	unknown	SSF56553	Insert subdomain of RNA polymerase alpha subunit	coord: 46..182 score: 1.08
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 21..299 score: 2.3
None	No IPR available	GENE3D	3.30.1360.10		coord: 6..46 score: 9.7E-40coord: 179..297 score: 9.7
None	No IPR available	PANTHER	PTHR11800	DNA-DIRECTED RNA POLYMERASE	coord: 5..316 score: 7.4E
None	No IPR available	PANTHER	PTHR11800:SF2	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3	coord: 5..316 score: 7.4E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity