Spo20963.1 (mRNA) | SpinachBase

Overview


Name	Spo20963.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein, putative
Location	chr2 : 34050644 .. 34054153 (-)
Sequence length	1162

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTTCCTCGTTCAAGCTAGATCTGGATGAGCTCATAAACGAGTTTTCCGAGGTGCGTTATCGATAGTCATGTTAAAATGGTTGGATATAACTGGTTCAATTTGAGTCTATTTTTGGGAGGAGGTGTGAGAACTTATTTTTTGTCCAGTATGCCATTCGCCTTCGTTGTACCATTTACAATTGTCTACATTCTTCGTTTCTATTGAATCGATTTTCTTTGGCTGTATTTGTATTCTTCTAGTTTTTTCTACGGGTTGTTTTCTTTGGAAGTTCTGTCTCTATTTTGGCTTTGCAAATAATGCCTTGTTATCAATCTTGTATAGTTGGATGCAAAAAAGCTAAAGCTCTTTATTCAACTACTAGCCTTTGTTCGTATGCAGGGAGGGCTTAAAACTTTAGCAGACATGAAAAGATTGTGGCTTGGGCGGAAGTTTTCCTACATATTTGAGGCTCGGCCTTCTACCAGCTCCAACATATTTATGCAATTCCTGTACAGTCATTCTATAAGTAAGTTTCTTTTTTTATGCTTAATGACATGTCATCACACATTTTGTTCTAAGAATCTAAGATGCATCTTTTATGTTTGGACCAACTGTAGAAAAGGATTTAGAATCTGAAGTCTAGATTATGTTATGATTTACCTTTTACAGAGAAATATGATCCAGTGTTTTGATATACGTACTTACAGCAGTTTATTGGACTCCTATAAGTAGTCCATGGTTCTAATCCAGCTTTTAGTCTCTCCACATCATGCACTTGGTATGATTTATATGTTCTGATATTTGTTTTTCTAAGATGTTTGATGTCCTGAGATTTCATGTGTGATATGAATCGGATAATCAATTCCGATTCAAAAGTAGGATAAGTGCATTTCAGTTGTCCCCTGCTTTTAAAAATGAATCTTATAGTTGATGTAGTGTTTTCCTACTTATCCTGGTGGCTGATATTCAGTCCCTTTTGTGTCTTGACAAATGACTGCTGTTTGTCTGATTGAAGTCCAAACCTTTTTGTTGTTGGACAAAATCTGATAATCTTTAATCTTTTTGTTATCATGCGCAGGTCACATGATCTCCACTAATTCTGTGTCACAAAGATTGGGAGCCCTCTATGTCCTCTATTGTCTCTATGAGACTCAGCCATTCAAGCCCCCATTCAAGATTTATCTATCACTTGGTATGTTTTTGCTTTTGCATATAAGTAAATTTTACTTCCTTCACTTCATTATTGAACCCTAAATGAAATCCGAAGCTATATTTAAGATGTATGTCTAATTGTCTATCATAAGTCACAGCCGATGAAGTTACCACTGATTGATTATTCTTGCCTTTCCCCCTTCTTTTTCAGGTGGCTAAAAACCTTTTATCTGGAAAACTAAATATAGTCTTCATAGTTGGTTCCCCCTGAAGTGATCCTGGGAAATTAGTTTTCTTCAAAGGCTCTCGTCTTAGGTACGAATATGGAGTTGCAGAGAGATGCAGTCTAATAATGGGAACAGTACTGAAACAATTAGTCTTTTCTTTAATACACACCACAACAACAAACTGATAAATATTTTTAAGGTGATCAAATAACCATAAAATTTGGCCTGAGTTACTGGTGTATACATACAATTTTCCTGAGTTACTGGTGTATAGTATAAAAACGTCTTATATGTCTTGTCTCAGAAACAGTAGGCAAGTAGATGTGTTTATGTCGTCTTTGATTAATTGGCACATATCCTTTCACTCCCTGCCTTTCTTTGTGAAGTGACTTAACCTCTTGATGGACTTGGCAGGAGAGTTACGAAGACTAAAAGCCCTGGTTGTAAATGCTAAAGAAAATGGAATCAAAATCGTATCTGTTTTGATCAAAAAGATGCTAGAGAAGAATGCATTCTTGTTTGGCTTTGTTAACATAAATGATTACTCTGAGAAAGAGAGGATAAAGGAGTTGGTAGATGTGCAGAATGCCTGTATAAAGAAGATGCATGAAAAGTATGTCCGACACTCATGTTATGCGTTAACAATCATAGCTACTTCAGCTTCATCAATGGTCTCATCATGCTGCTTTTCCTTTCTGTAGATTGTTGGCGAACACTGAGATTGAGCGTTACCTTCATATGGACATGGTATGTTGCATACTTTTATAATTTTTGGTTTCTTGTTGACTGTATTTTATGTATTATTTTAATACATCATGTTGTCACTGTCTTCTAAATTGATGCAAAAGCATTTTGATCAAAGCCACACACTATACATGACTGAATTCTGCGCTATCACAGTATCACTGTGAAACCGTGATATATCAGGCCTGTAGGATGCCTTACCCTCTATATCAAGTTTGTGAAGGTGTCCTATACATTAATATATTTGAAGGTTCTTTTAATCTAGGTTTTTAGTAGGTTTAGTAATGGACTAACGGGTGTTAAGTTAAAAAGGCCCAGAAAAAGTTGTTTGCGCCATTGAATTGCTTATTTTGAATCTGTGGCATCAATTTTGCTGCTGATTTTTCTCATAATAACTCGAACTTATGTAACAGGGCATGGAACTTGATCTAGAAGTGCTCAGGAAAATGTCCGAAGAATATGAAGGAACTAAAAGTCTTGCTATCAGAGGTATTCCATTCCATTATTTGCTTGTCGTTCTTTTCTCTTGCTACAACATGGTCAGGTTCATTATTTCAGAAAGTTATCTTGAGTTCCAAACTTAAATATTCTTCCGTGTTTTGTCTTGATTTATTGAACCCTGTTACTGGCAGGCTATTAAACAAACATGCAACCATGTCTGAAAATTAAATACTCATAAGAAGTATGTCTGTGTGTCTTGAGTATTCTAGTATTCTTGCAAATGGCAACAATTATCCCCATGTGTTTGAGTTTAGTTTGAGTTAGCAATGTTAGACTTAGAACAAAATATAAGGTCATTGATAAATTTTAAAAAATTCCGAGTTTGGTTACTGATTTGTCATTTGTTTGTTTTTGAAGAGGCAAGTAGGGTAGTGGATGTCGAAAATATGAAGCATATTGCAGAAGATAGGGTGACAATCGGAGATGAAGTGGAAAAGATAAATGAGGAGTGGAGTAATCAAAAGGAAATGTTATCTCAGCTTTTAGGAACAGACCAACTTCCTGGCATAACTCCTCATCCCAAGAGAAGAGAGAGACACGACGAGCTGCTTCCTGCTGATGAACAGCAGATTGGAGATGAATTGCAACACACAAGTTTCATGTCGCTTCTTATGGGCAACGAATCACCACCCACTAATGGGAATCTTCAACAGCCTCCTGGTGAAGAGGACCAAGATTATGACCTGGAGTATGCTAAGGATCTTGAATATCAATTATTTGGGGATATGTTGTAGTTCATGTTTTATATATTTAATATTTAATAGTATTTAATATTTGTGCCAAAGCAAGGTTTTATCATTGTTTTCAGGGCTGTAGATAATGATTCCAGTACTAAAGATATATTTACAAATTTCAATTTTGATCAATTATGTGGAAATATTACTTGTACTCAAAGCAAAT

mRNA sequence

ATGGATTTTTCCTCGTTCAAGCTAGATCTGGATGAGCTCATAAACGAGTTTTCCGAGGGAGGGCTTAAAACTTTAGCAGACATGAAAAGATTGTGGCTTGGGCGGAAGTTTTCCTACATATTTGAGGCTCGGCCTTCTACCAGCTCCAACATATTTATGCAATTCCTGTACAGTCATTCTATAAGTCACATGATCTCCACTAATTCTGTGTCACAAAGATTGGGAGCCCTCTATGTCCTCTATTGTCTCTATGAGACTCAGCCATTCAAGCCCCCATTCAAGATTTATCTATCACTTGGAGAGTTACGAAGACTAAAAGCCCTGGTTGTAAATGCTAAAGAAAATGGAATCAAAATCGTATCTGTTTTGATCAAAAAGATGCTAGAGAAGAATGCATTCTTGTTTGGCTTTGTTAACATAAATGATTACTCTGAGAAAGAGAGGATAAAGGAGTTGGTAGATGTGCAGAATGCCTGTATAAAGAAGATGCATGAAAAATTGTTGGCGAACACTGAGATTGAGCGTTACCTTCATATGGACATGGGCATGGAACTTGATCTAGAAGTGCTCAGGAAAATGTCCGAAGAATATGAAGGAACTAAAAGTCTTGCTATCAGAGAGGCAAGTAGGGTAGTGGATGTCGAAAATATGAAGCATATTGCAGAAGATAGGGTGACAATCGGAGATGAAGTGGAAAAGATAAATGAGGAGTGGAGTAATCAAAAGGAAATGTTATCTCAGCTTTTAGGAACAGACCAACTTCCTGGCATAACTCCTCATCCCAAGAGAAGAGAGAGACACGACGAGCTGCTTCCTGCTGATGAACAGCAGATTGGAGATGAATTGCAACACACAAGTTTCATGTCGCTTCTTATGGGCAACGAATCACCACCCACTAATGGGAATCTTCAACAGCCTCCTGGTGAAGAGGACCAAGATTATGACCTGGAGTATGCTAAGGATCTTGAATATCAATTATTTGGGGATATGTTGTAGTTCATGTTTTATATATTTAATATTTAATAGTATTTAATATTTGTGCCAAAGCAAGGTTTTATCATTGTTTTCAGGGCTGTAGATAATGATTCCAGTACTAAAGATATATTTACAAATTTCAATTTTGATCAATTATGTGGAAATATTACTTGTACTCAAAGCAAAT

Coding sequence (CDS)

ATGGATTTTTCCTCGTTCAAGCTAGATCTGGATGAGCTCATAAACGAGTTTTCCGAGGGAGGGCTTAAAACTTTAGCAGACATGAAAAGATTGTGGCTTGGGCGGAAGTTTTCCTACATATTTGAGGCTCGGCCTTCTACCAGCTCCAACATATTTATGCAATTCCTGTACAGTCATTCTATAAGTCACATGATCTCCACTAATTCTGTGTCACAAAGATTGGGAGCCCTCTATGTCCTCTATTGTCTCTATGAGACTCAGCCATTCAAGCCCCCATTCAAGATTTATCTATCACTTGGAGAGTTACGAAGACTAAAAGCCCTGGTTGTAAATGCTAAAGAAAATGGAATCAAAATCGTATCTGTTTTGATCAAAAAGATGCTAGAGAAGAATGCATTCTTGTTTGGCTTTGTTAACATAAATGATTACTCTGAGAAAGAGAGGATAAAGGAGTTGGTAGATGTGCAGAATGCCTGTATAAAGAAGATGCATGAAAAATTGTTGGCGAACACTGAGATTGAGCGTTACCTTCATATGGACATGGGCATGGAACTTGATCTAGAAGTGCTCAGGAAAATGTCCGAAGAATATGAAGGAACTAAAAGTCTTGCTATCAGAGAGGCAAGTAGGGTAGTGGATGTCGAAAATATGAAGCATATTGCAGAAGATAGGGTGACAATCGGAGATGAAGTGGAAAAGATAAATGAGGAGTGGAGTAATCAAAAGGAAATGTTATCTCAGCTTTTAGGAACAGACCAACTTCCTGGCATAACTCCTCATCCCAAGAGAAGAGAGAGACACGACGAGCTGCTTCCTGCTGATGAACAGCAGATTGGAGATGAATTGCAACACACAAGTTTCATGTCGCTTCTTATGGGCAACGAATCACCACCCACTAATGGGAATCTTCAACAGCCTCCTGGTGAAGAGGACCAAGATTATGACCTGGAGTATGCTAAGGATCTTGAATATCAATTATTTGGGGATATGTTGTAG

Protein sequence

MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHSISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIVSVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQPPGEEDQDYDLEYAKDLEYQLFGDML

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo20963	Spo20963	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo20963.1	Spo20963.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20963.1.CDS.7	Spo20963.1.CDS.7	CDS
Spo20963.1.CDS.6	Spo20963.1.CDS.6	CDS
Spo20963.1.CDS.5	Spo20963.1.CDS.5	CDS
Spo20963.1.CDS.4	Spo20963.1.CDS.4	CDS
Spo20963.1.CDS.3	Spo20963.1.CDS.3	CDS
Spo20963.1.CDS.2	Spo20963.1.CDS.2	CDS
Spo20963.1.CDS.1	Spo20963.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20963.1.utr3p.1	Spo20963.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo20963.1.exon.7	Spo20963.1.exon.7	exon
Spo20963.1.exon.6	Spo20963.1.exon.6	exon
Spo20963.1.exon.5	Spo20963.1.exon.5	exon
Spo20963.1.exon.4	Spo20963.1.exon.4	exon
Spo20963.1.exon.3	Spo20963.1.exon.3	exon
Spo20963.1.exon.2	Spo20963.1.exon.2	exon
Spo20963.1.exon.1	Spo20963.1.exon.1	exon

Homology

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BLAST of Spo20963.1 vs. NCBI nr
Match: gi|731353174|ref|XP_010687922.1| (PREDICTED: uncharacterized protein LOC104901982 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 454.9 bits (1169), Expect = 1.200e-124
Identity = 240/343 (69.97%), Postives = 276/343 (80.47%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MDFS FKLD+D+LI EFS+G LKTL+DMK+LWL RKFSYIF+ARPST   IFMQ  YSH+
Sbjct: 5   MDFSHFKLDIDDLIKEFSKGELKTLSDMKKLWLERKFSYIFDARPSTGLTIFMQCFYSHT 64

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           ISHM  TNS+SQRLGALYVLYCLYETQPFKP  KIYLSLGELR+LKALVVNAKE GIK+ 
Sbjct: 65  ISHMAPTNSLSQRLGALYVLYCLYETQPFKPLIKIYLSLGELRQLKALVVNAKEKGIKVA 124

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
           SVL+K+ML+KNAFLFGFVN NDYS+KERIKELV+VQNACIKKMHEKLLAN +IER+LH+D
Sbjct: 125 SVLVKRMLDKNAFLFGFVNTNDYSDKERIKELVNVQNACIKKMHEKLLANNDIERHLHLD 184

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MGMELDLE L KMS+EYE TK+LAIREAS++VDV+N+ HI EDR+T+GDEV+KINEEW N
Sbjct: 185 MGMELDLEALMKMSKEYEETKNLAIREASQIVDVQNINHITEDRLTVGDEVQKINEEWGN 244

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDE----LLPADEQQIGDELQHTSFMSLLMGNES 300
           QKEM  QL  TDQ P +T H K+RER  E    L  A++QQ  DELQ T FM LL+GN+S
Sbjct: 245 QKEMFLQLTRTDQHPAVT-HTKQRERSQERSMLLHAAEQQQNDDELQQTRFMELLLGNQS 304

Query: 301 PP--------TNGNLQQPPGEEDQDYDLEYAKDLEYQLFGDML 332
           P         T       PGE + D DL+YA DLE +LF D L
Sbjct: 305 PEAAHGNAGRTPNEQHSVPGEVELDDDLDYAMDLENELFRDFL 346

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BLAST of Spo20963.1 vs. NCBI nr
Match: gi|902178169|gb|KNA09082.1| (hypothetical protein SOVF_156540 [Spinacia oleracea])

HSP 1 Score: 406.8 bits (1044), Expect = 3.700e-110
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


		  
Query: 127 MLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELD 186
           MLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELD
Sbjct: 1   MLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELD 60

Query: 187 LEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLS 246
           LEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLS
Sbjct: 61  LEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLS 120

Query: 247 QLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQP 306
           QLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQP
Sbjct: 121 QLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQP 180

Query: 307 PGEEDQDYDLEYAKDLEYQLFGDML 332
           PGEEDQDYDLEYAKDLEYQLFGDML
Sbjct: 181 PGEEDQDYDLEYAKDLEYQLFGDML 205

[Close]

BLAST of Spo20963.1 vs. NCBI nr
Match: gi|743816459|ref|XP_011020179.1| (PREDICTED: uncharacterized protein LOC105122642 isoform X2 [Populus euphratica])

HSP 1 Score: 324.7 bits (831), Expect = 1.900e-85
Identity = 168/317 (53.00%), Postives = 227/317 (71.61%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MD S FKLD+DELINEF EG   TLADMKR+WL RKF+YIFEA P T    FMQ LY+H+
Sbjct: 1   MDLSPFKLDIDELINEFVEGEFTTLADMKRVWLSRKFTYIFEASPPTKLAFFMQSLYAHT 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           I HMIST+S+SQRLG LY LYCLYETQPFKPPFKIY SLGEL++LK LV+NAKE+GIK+V
Sbjct: 61  IGHMISTSSLSQRLGGLYCLYCLYETQPFKPPFKIYFSLGELKKLKTLVINAKEHGIKVV 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
             L+K+MLEKN FLFGFV++++ S  E + +L ++Q+A ++  ++KL  +T IE++LHMD
Sbjct: 121 PALVKRMLEKNMFLFGFVDLHESSVSETVNQLTELQDARVQVAYKKLFDDTRIEQFLHMD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MGME DLE+L+KMS EY   K  AIREA++ VDV+N++HI++DR  IGDEVE+I E W+ 
Sbjct: 181 MGMEFDLEMLKKMSTEYAEAKKHAIREANKAVDVQNIQHISDDREFIGDEVERITENWNV 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTN 300
           Q+++  Q  G +Q        + + +H +    D+   GDE  H   + L+   +     
Sbjct: 241 QRQVFYQQTGLNQRHAQKDEQQHQPQHKKHEQQDD-DFGDEFSHQLELQLIEEEQ----- 300

Query: 301 GNLQQPPGEEDQDYDLE 318
             LQQ   +++ +++LE
Sbjct: 301 --LQQKEEDDESNHELE 309

[Close]

BLAST of Spo20963.1 vs. NCBI nr
Match: gi|566174833|ref|XP_006381113.1| (hypothetical protein POPTR_0006s06470g [Populus trichocarpa])

HSP 1 Score: 323.9 bits (829), Expect = 3.200e-85
Identity = 168/317 (53.00%), Postives = 228/317 (71.92%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MD S FKLD+DELINEF EG   TLADMKR+WL RKF+YIFEA P T    FMQ LY+H+
Sbjct: 1   MDLSPFKLDIDELINEFVEGEFTTLADMKRVWLSRKFTYIFEASPPTKLAFFMQSLYAHT 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           I HMIST+S+SQRLG LY LYCLYETQPFKPPFKIY SLGEL++LK LV+NAKE+GIK+V
Sbjct: 61  IGHMISTSSLSQRLGGLYCLYCLYETQPFKPPFKIYFSLGELKKLKNLVINAKEHGIKVV 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
             L+K+MLEKN FLFGFV++++ S  E + +L ++Q+A ++  ++KL  +T IE++LHMD
Sbjct: 121 PALVKRMLEKNMFLFGFVDLHEGSVSETVNQLTELQDARVQVAYKKLFDDTRIEQFLHMD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MGME DLE+L+KMS EY   K  AIREA++ VDV+N++HI++DR  IGDEVE+I E W+ 
Sbjct: 181 MGMEFDLEMLKKMSTEYAEAKKHAIREANKAVDVQNIQHISDDREFIGDEVERITENWNV 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTN 300
           Q+++  Q  G +Q        +++ +H +    D+   GDE  H   + L+   +     
Sbjct: 241 QRQVFYQQTGLNQRHAQKDEQQQQPQHKKHEQQDD-DFGDEFSHQLELQLIEEEQ----- 300

Query: 301 GNLQQPPGEEDQDYDLE 318
             LQQ   +++ +++LE
Sbjct: 301 --LQQKEEDDESNHELE 309

[Close]

BLAST of Spo20963.1 vs. NCBI nr
Match: gi|719981674|ref|XP_010250199.1| (PREDICTED: uncharacterized protein LOC104592497 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 320.1 bits (819), Expect = 4.600e-84
Identity = 166/288 (57.64%), Postives = 214/288 (74.31%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MD + FKLD+DELINEFSE G  TLADMKR+WL RKF+YI+E RP T+   FMQ LY+HS
Sbjct: 1   MDLTPFKLDIDELINEFSETGSTTLADMKRIWLSRKFTYIYEGRPKTNLVFFMQSLYAHS 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           I  M+ST S+SQRLG +Y LYCLYETQPFKPP KIYLSLGEL++L+ LVV+AKE  ++IV
Sbjct: 61  IGKMVSTGSLSQRLGGMYCLYCLYETQPFKPPLKIYLSLGELKKLRNLVVDAKEANVRIV 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
             L+K+MLEK+ FLFGFV+IN+ S  ER+ E+ ++QNA I+  +EKLL+NT IE +LHMD
Sbjct: 121 PALVKRMLEKHIFLFGFVDINEGSVAERVNEITNLQNARIRVAYEKLLSNTRIEHFLHMD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           +GMELD+EVL++MS EY   K LAI+EA   VD+EN+KHIAE++  IGD +EKI E+W+ 
Sbjct: 181 LGMELDMEVLKRMSTEYAKAKELAIKEAGEQVDIENIKHIAENKTLIGDVIEKIAEDWNI 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGD----ELQH 285
           QKE+  Q  G +Q   I     + E H      +E+ + D    EL+H
Sbjct: 241 QKEVFYQQSGFNQSSNI-----QEEDHVAGAAQEEENVADDFDKELEH 283

[Close]

BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EIG1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g193760 PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 8.300e-125
Identity = 240/343 (69.97%), Postives = 276/343 (80.47%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MDFS FKLD+D+LI EFS+G LKTL+DMK+LWL RKFSYIF+ARPST   IFMQ  YSH+
Sbjct: 5   MDFSHFKLDIDDLIKEFSKGELKTLSDMKKLWLERKFSYIFDARPSTGLTIFMQCFYSHT 64

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           ISHM  TNS+SQRLGALYVLYCLYETQPFKP  KIYLSLGELR+LKALVVNAKE GIK+ 
Sbjct: 65  ISHMAPTNSLSQRLGALYVLYCLYETQPFKPLIKIYLSLGELRQLKALVVNAKEKGIKVA 124

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
           SVL+K+ML+KNAFLFGFVN NDYS+KERIKELV+VQNACIKKMHEKLLAN +IER+LH+D
Sbjct: 125 SVLVKRMLDKNAFLFGFVNTNDYSDKERIKELVNVQNACIKKMHEKLLANNDIERHLHLD 184

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MGMELDLE L KMS+EYE TK+LAIREAS++VDV+N+ HI EDR+T+GDEV+KINEEW N
Sbjct: 185 MGMELDLEALMKMSKEYEETKNLAIREASQIVDVQNINHITEDRLTVGDEVQKINEEWGN 244

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDE----LLPADEQQIGDELQHTSFMSLLMGNES 300
           QKEM  QL  TDQ P +T H K+RER  E    L  A++QQ  DELQ T FM LL+GN+S
Sbjct: 245 QKEMFLQLTRTDQHPAVT-HTKQRERSQERSMLLHAAEQQQNDDELQQTRFMELLLGNQS 304

Query: 301 PP--------TNGNLQQPPGEEDQDYDLEYAKDLEYQLFGDML 332
           P         T       PGE + D DL+YA DLE +LF D L
Sbjct: 305 PEAAHGNAGRTPNEQHSVPGEVELDDDLDYAMDLENELFRDFL 346

[Close]

BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPA5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_156540 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 2.600e-110
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 1


		  
Query: 127 MLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELD 186
           MLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELD
Sbjct: 1   MLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMDMGMELD 60

Query: 187 LEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLS 246
           LEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLS
Sbjct: 61  LEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSNQKEMLS 120

Query: 247 QLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQP 306
           QLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQP
Sbjct: 121 QLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTNGNLQQP 180

Query: 307 PGEEDQDYDLEYAKDLEYQLFGDML 332
           PGEEDQDYDLEYAKDLEYQLFGDML
Sbjct: 181 PGEEDQDYDLEYAKDLEYQLFGDML 205

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BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: U5G664_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06470g PE=4 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 2.200e-85
Identity = 168/317 (53.00%), Postives = 228/317 (71.92%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MD S FKLD+DELINEF EG   TLADMKR+WL RKF+YIFEA P T    FMQ LY+H+
Sbjct: 1   MDLSPFKLDIDELINEFVEGEFTTLADMKRVWLSRKFTYIFEASPPTKLAFFMQSLYAHT 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           I HMIST+S+SQRLG LY LYCLYETQPFKPPFKIY SLGEL++LK LV+NAKE+GIK+V
Sbjct: 61  IGHMISTSSLSQRLGGLYCLYCLYETQPFKPPFKIYFSLGELKKLKNLVINAKEHGIKVV 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
             L+K+MLEKN FLFGFV++++ S  E + +L ++Q+A ++  ++KL  +T IE++LHMD
Sbjct: 121 PALVKRMLEKNMFLFGFVDLHEGSVSETVNQLTELQDARVQVAYKKLFDDTRIEQFLHMD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MGME DLE+L+KMS EY   K  AIREA++ VDV+N++HI++DR  IGDEVE+I E W+ 
Sbjct: 181 MGMEFDLEMLKKMSTEYAEAKKHAIREANKAVDVQNIQHISDDREFIGDEVERITENWNV 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMSLLMGNESPPTN 300
           Q+++  Q  G +Q        +++ +H +    D+   GDE  H   + L+   +     
Sbjct: 241 QRQVFYQQTGLNQRHAQKDEQQQQPQHKKHEQQDD-DFGDEFSHQLELQLIEEEQ----- 300

Query: 301 GNLQQPPGEEDQDYDLE 318
             LQQ   +++ +++LE
Sbjct: 301 --LQQKEEDDESNHELE 309

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BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: D7TC57_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05760 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 4.300e-81
Identity = 163/284 (57.39%), Postives = 203/284 (71.48%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MD SSFKLD+DELINEF+E    TL DMKR+WL RKFSYI+EARPS++   FMQ LYSHS
Sbjct: 1   MDMSSFKLDIDELINEFTESKSMTLDDMKRVWLSRKFSYIYEARPSSNLAFFMQSLYSHS 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           IS+M  T S+S RLG LY LYCLYETQP KPPFKIYLSLG+L++LK L  NAKE G+++ 
Sbjct: 61  ISYMSDTASLSHRLGGLYCLYCLYETQPCKPPFKIYLSLGDLKKLKDLAANAKEKGVEVA 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
             LIK+ML++  FLFGFV+IN+ S +ER+ +L D+QNA I+  + KLLAN+ IE +LHMD
Sbjct: 121 PALIKRMLDRKIFLFGFVDINESSVRERVNDLADLQNARIQVAYNKLLANSRIEHFLHMD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MGME DL+ L K+S EY   + LAI EAS+VVDV+N+KHI+ED+  IGD V K  E W+ 
Sbjct: 181 MGMEFDLKGLNKISTEYANARKLAIEEASKVVDVQNIKHISEDKKLIGDVVNKTAENWNA 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQH 285
           QKE+  Q  G +Q P         E H +    D      EL+H
Sbjct: 241 QKEVFYQKTGLNQRPA--------EEHRQDNEDDGDDFDLELEH 276

[Close]

BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Match: V4TH10_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032301mg PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.100e-79
Identity = 154/289 (53.29%), Postives = 209/289 (72.32%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           MD S FK D+DELI+EF++  L+TLADMKR+WL RKF+YI+EA PST+ + FMQ LY+H+
Sbjct: 1   MDLSPFKQDIDELIDEFAQDELRTLADMKRVWLSRKFTYIYEASPSTNLSFFMQSLYAHT 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
             HM+S +S+S+RLG LY LYCLYETQPFKPPF IY+SLGEL++LK LVV AK   I++V
Sbjct: 61  TRHMVSNDSLSRRLGGLYCLYCLYETQPFKPPFHIYISLGELKKLKELVVEAKNKDIRVV 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
             L+K+MLEK  FLFGFV++N+ S  E + +L  +QNA ++  +EKL A+T IE ++HMD
Sbjct: 121 PALVKRMLEKKNFLFGFVDLNESSITETVNQLTGLQNARVQVAYEKLFASTRIEHFIHMD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           +GME+DL VL+KMS EY   K  AI+EAS VVDV+N+KHI +D+  +GD VEKI E W+ 
Sbjct: 181 LGMEVDLNVLQKMSTEYAEAKKQAIQEASEVVDVQNVKHIVDDQELMGDVVEKITENWNV 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKRRERHDELLPADEQQIGDELQHTSFMS 290
           Q+E+  Q    DQ P      + + + DE     +++ G EL+   F +
Sbjct: 241 QRELFYQQTRMDQQPPAAEQRQLQVKDDE--QGGDEEFGQELEQLLFQA 287

[Close]

BLAST of Spo20963.1 vs. TAIR (Arabidopsis)
Match: AT3G53270.1 (Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein)

HSP 1 Score: 237.7 bits (605), Expect = 1.100e-62
Identity = 123/271 (45.39%), Postives = 185/271 (68.27%), Query Frame = 1


		  
Query: 1   MDFSSFKLDLDELINEFSEGGLKTLADMKRLWLGRKFSYIFEARPSTSSNIFMQFLYSHS 60
           M+ S FK D+DELI+EF E  L T ADMK +WL RKFS+I+EA P+++   FMQ LY H+
Sbjct: 1   MNLSPFKRDIDELIDEFVEDDLTTFADMKSVWLSRKFSHIYEASPNSNLAFFMQSLYVHT 60

Query: 61  ISHMISTNSVSQRLGALYVLYCLYETQPFKPPFKIYLSLGELRRLKALVVNAKENGIKIV 120
           I HM+S +S S+RLG LY LYCL+E QPFKP F+IY+SL EL + + LVV AK+ G++I 
Sbjct: 61  IGHMVSIDSFSRRLGGLYCLYCLHEIQPFKPKFRIYISLQELGKFRDLVVEAKDKGVEIA 120

Query: 121 SVLIKKMLEKNAFLFGFVNINDYSEKERIKELVDVQNACIKKMHEKLLANTEIERYLHMD 180
           + + KKML++N  +FG V  ++ S  + I +L ++QNA ++  +EKL+ +T I +++H+D
Sbjct: 121 AAVAKKMLDENMLIFGAV--DETSATKTIHQLTELQNARVRFAYEKLICDTSINQFIHLD 180

Query: 181 MGMELDLEVLRKMSEEYEGTKSLAIREASRVVDVENMKHIAEDRVTIGDEVEKINEEWSN 240
           MG E+DL  L KMS EY   K  A+  A  +++++++KHI+E++  +G+ +EK+ EEW +
Sbjct: 181 MGKEVDLNSLDKMSIEYAEAKKRAVEGAGEIMEIDDIKHISEEKELMGERMEKLKEEWDS 240

Query: 241 QKEMLSQLLGTDQLPGITPHPKR--RERHDE 270
           Q+    +     +L G T  PK+     HDE
Sbjct: 241 QRLYFYE---QTKLDGFTTTPKQLTNVEHDE 266

The following BLAST results are available for this feature:

BLAST of Spo20963.1 vs. NCBI nr
BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
BLAST of Spo20963.1 vs. ExPASy Swiss-Prot
BLAST of Spo20963.1 vs. TAIR (Arabidopsis)

BLAST of Spo20963.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731353174\|ref\|XP_010687922.1\|	1.2e-124	69.9	PREDICTED: uncharacterized pro...	[more]
gi\|902178169\|gb\|KNA09082.1\|	3.7e-110	100.	hypothetical protein SOVF_1565...	[more]
gi\|743816459\|ref\|XP_011020179.1\|	1.9e-85	53.0	PREDICTED: uncharacterized pro...	[more]
gi\|566174833\|ref\|XP_006381113.1\|	3.2e-85	53.0	hypothetical protein POPTR_000...	[more]
gi\|719981674\|ref\|XP_010250199.1\|	4.6e-84	57.6	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo20963.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8EIG1_BETVU	8.3e-125	69.9	Uncharacterized protein OS=Bet...	[more]
A0A0K9QPA5_SPIOL	2.6e-110	100.	Uncharacterized protein OS=Spi...	[more]
U5G664_POPTR	2.2e-85	53.0	Uncharacterized protein OS=Pop...	[more]
D7TC57_VITVI	4.3e-81	57.3	Putative uncharacterized prote...	[more]
V4TH10_9ROSI	1.1e-79	53.2	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo20963.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo20963.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G53270.1	1.1e-62	45.3	Small nuclear RNA activating c...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PANTHER	PTHR15131	SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1	coord: 1..245 score: 4.5
IPR019188	Small nuclear RNA activating complex (SNAPc), subunit SNAP43	PFAM	PF09808	SNAPc_SNAP43	coord: 6..201 score: 4.5