Spo21021.1 (mRNA) | SpinachBase

Overview


Name	Spo21021.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	(Thylakoid soluble phosphoprotein) (Precursor)
Location	chr1 : 42053988 .. 42055321 (-)
Sequence length	561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCAACCCACTCGGGTTAGCAGGCTACACATTTTGAAAGTGGGGAATGGTAAAGGAATCCTCCCTCAAAGTGCTTGTGGGTTAGCAGGCTACACATTTTGAAAGTGGGGAATGGTAAAGGAATCCTCCCTCAAAGTGCCCTTAATGGGGAAAGCCTAACCTTTGATTGAAAGCGTAGAATCATTTCTACTAGCCCAAAACATTGTAGTGATACTATGAATTATGCGATGGTATTTCTAGTTGTGAAACCTTAGATAACTATGATGATATATTTGATGGTACTCGTAGAGCTATAGTAGTAATTAATCAATGTTTTTCTATAAAACTTCTATTCTGATCTCGCGTATTTTCATCCTTCATTTGGTAAAATAAAATATAGGTAAATACTCTTACATAAACCTAAAATATCAAACACAATTACCTCGAAGTTTGAGGTAAAACATGCTCGTGGAGTGAAGACTGACTAGGTATATTATTACTAAGAAAATCGATAGAGTAGAAAGTATTGCGTAGTACTCCCTGCCATAAAAAATACTTGTACAGTTGTACGTTTCCATGCCGAGTTACAAATAGTCGTTTCCAAAACTTTTGGGCAGTGAATACAAGCAATGGTAGAAAATTGTTGTTGCAACGATAAGAGGATGGGCCAGAGATAGCCACGTGTCAAGCACACGACCATACTCAAATGATGATGATTTATCGTAATTCTCACATAATTAAAAATTATAAAAGAAAATGAAATGAAATAAAATAAATAAAAGATAAGATCTATAAAAACCTTGTGGAAAACCCGTGGTGGAAACACTTCTATAAATAAATTCCAATTCCATAAAAAATAAAAATAAATTCCAAGGGCTGAAAAATTCACACCACCCCAAGTTGCATATATTATCCTAAGCCTTTCTCACAATATAACTGTTTATCATACATTACTTCTCCCCTTAGCAGCTTTCCTCCACCATTATCTAACTCAACAACAAAAGCTTAAGCTCAAACTCAATCAGCCCAAGGAGAACATAATGTCATCATTGCCCTTCGTGTTCGGTGCAGCGGCCAGTTCGAGAGTAGTCACAGCGGCAGCAGCCAAAGGCACGGCAGAAACCAAGCAAGAAAAGAGCTTTGTAGACTGGCTTCTTGGCAAAATAACAAAGGAAGATCAATTCTATGAAACTGACCCGATTCTTCGGGGTGGTGATGTCAAGTCGAGCGGCTCCACCAGTGGAAAGAAGGGCGGCACCACCAGTGGAAAGAAAGGCACAGTTTCAATTCCGAGCAAGAAGAAGAACGGTAATGGAGGTGTCTTTGGAGGTCTCTTTGCCAAGAAGGACTAG

mRNA sequence

ATGGGTCAACCCACTCGGGTTAGCAGGCTACACATTTTGAAAGTGGGGAATGGTAAAGGAATCCTCCCTCAAAGTGCTTGTGGGGCTGAAAAATTCACACCACCCCAAGTTGCATATATTATCCTAAGCCTTTCTCACAATATAACTGTTTATCATACATTACTTCTCCCCTTAGCAGCTTTCCTCCACCATTATCTAACTCAACAACAAAAGCTTAAGCTCAAACTCAATCAGCCCAAGGAGAACATAATGTCATCATTGCCCTTCGTGTTCGGTGCAGCGGCCAGTTCGAGAGTAGTCACAGCGGCAGCAGCCAAAGGCACGGCAGAAACCAAGCAAGAAAAGAGCTTTGTAGACTGGCTTCTTGGCAAAATAACAAAGGAAGATCAATTCTATGAAACTGACCCGATTCTTCGGGGTGGTGATGTCAAGTCGAGCGGCTCCACCAGTGGAAAGAAGGGCGGCACCACCAGTGGAAAGAAAGGCACAGTTTCAATTCCGAGCAAGAAGAAGAACGGTAATGGAGGTGTCTTTGGAGGTCTCTTTGCCAAGAAGGACTAG

Coding sequence (CDS)

ATGGGTCAACCCACTCGGGTTAGCAGGCTACACATTTTGAAAGTGGGGAATGGTAAAGGAATCCTCCCTCAAAGTGCTTGTGGGGCTGAAAAATTCACACCACCCCAAGTTGCATATATTATCCTAAGCCTTTCTCACAATATAACTGTTTATCATACATTACTTCTCCCCTTAGCAGCTTTCCTCCACCATTATCTAACTCAACAACAAAAGCTTAAGCTCAAACTCAATCAGCCCAAGGAGAACATAATGTCATCATTGCCCTTCGTGTTCGGTGCAGCGGCCAGTTCGAGAGTAGTCACAGCGGCAGCAGCCAAAGGCACGGCAGAAACCAAGCAAGAAAAGAGCTTTGTAGACTGGCTTCTTGGCAAAATAACAAAGGAAGATCAATTCTATGAAACTGACCCGATTCTTCGGGGTGGTGATGTCAAGTCGAGCGGCTCCACCAGTGGAAAGAAGGGCGGCACCACCAGTGGAAAGAAAGGCACAGTTTCAATTCCGAGCAAGAAGAAGAACGGTAATGGAGGTGTCTTTGGAGGTCTCTTTGCCAAGAAGGACTAG

Protein sequence

MGQPTRVSRLHILKVGNGKGILPQSACGAEKFTPPQVAYIILSLSHNITVYHTLLLPLAAFLHHYLTQQQKLKLKLNQPKENIMSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21021	Spo21021	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21021.1	Spo21021.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21021.1.CDS.2	Spo21021.1.CDS.2	CDS
Spo21021.1.CDS.1	Spo21021.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21021.1.exon.2	Spo21021.1.exon.2	exon
Spo21021.1.exon.1	Spo21021.1.exon.1	exon

Homology

[Close]

BLAST of Spo21021.1 vs. NCBI nr
Match: gi|27529048|emb|CAD45559.1| (thylakoid soluble phosphoprotein [Spinacia oleracea])

HSP 1 Score: 194.9 bits (494), Expect = 1.300e-46
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV
Sbjct: 1   MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 60

Query: 144 KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD 187
           KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD
Sbjct: 61  KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD 103

[Close]

BLAST of Spo21021.1 vs. NCBI nr
Match: gi|88192991|pdb|2FFT|A (Chain A, Nmr Structure Of Spinach Thylakoid Soluble Phosphoprotein Of 9 Kda In Sds Micelles)

HSP 1 Score: 161.4 bits (407), Expect = 1.500e-36
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1


		  
Query: 103 AAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKG 162
           +AAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKG
Sbjct: 1   SAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDVKSSGSTSGKKGGTTSGKKG 60

Query: 163 TVSIPSKKKNGNGGVFGGLFAKKD 187
           TVSIPSKKKNGNGGVFGGLFAKKD
Sbjct: 61  TVSIPSKKKNGNGGVFGGLFAKKD 84

[Close]

BLAST of Spo21021.1 vs. NCBI nr
Match: gi|731348658|ref|XP_010685599.1| (PREDICTED: uncharacterized protein LOC104899990 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 119.4 bits (298), Expect = 6.700e-24
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLPFVFGAAA+ RV T  A KG++   +EKSFVDWLLGK+ KEDQFYETDP+L+  + 
Sbjct: 1   MASLPFVFGAAATGRVFTTRATKGSSAPTEEKSFVDWLLGKVAKEDQFYETDPLLQKVEE 60

Query: 144 KSSGSTSGKKGGTTSGKKGTVSIPSKKKN-GNGGVFGGLFAKKD 187
           K++G        TT+G+KGTVS+ SKKK  GNGG FGGLFAKKD
Sbjct: 61  KAAG--------TTNGRKGTVSMQSKKKTGGNGGGFGGLFAKKD 96

[Close]

BLAST of Spo21021.1 vs. NCBI nr
Match: gi|255569279|ref|XP_002525607.1| (PREDICTED: uncharacterized protein LOC8276373 [Ricinus communis])

HSP 1 Score: 109.4 bits (272), Expect = 6.900e-21
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLP  F AA + RV  A AAKG   +K+EK F+DW+LG +TKEDQFYETDPIL+  + 
Sbjct: 1   MASLPIAF-AAPTVRVYAATAAKGAGGSKEEKGFLDWVLGNLTKEDQFYETDPILKKVEE 60

Query: 144 KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKK 186
           KSS       GGTTSG+K +VSIP KKKNG  G FGGLFAKK
Sbjct: 61  KSS-------GGTTSGRKNSVSIPQKKKNGGFGGFGGLFAKK 94

[Close]

BLAST of Spo21021.1 vs. NCBI nr
Match: gi|802538465|ref|XP_012067962.1| (PREDICTED: uncharacterized protein LOC105630678 [Jatropha curcas])

HSP 1 Score: 99.0 bits (245), Expect = 9.400e-18
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLP VF A    RV  A A K    +K+EKSF+DW+LG + KEDQFYETDPIL+  + 
Sbjct: 1   MASLPIVF-APPKVRVYAATATKEAGGSKEEKSFLDWVLGNLAKEDQFYETDPILKKVEE 60

Query: 144 KSSGSTSGKKGGTTSGK-KGTVSIPSKKKNGNGGVFGGLFAKKD 187
           K+S        GTTSG+ + +VSIP KKKNG  GVFGGLFAKK+
Sbjct: 61  KNS-------SGTTSGRGRNSVSIPQKKKNGGNGVFGGLFAKKE 96

[Close]

BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
Match: Q8GT36_SPIOL (Thylakoid soluble phosphoprotein OS=Spinacia oleracea GN=tsp9 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.700e-47
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV
Sbjct: 1   MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 60

Query: 144 KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD 187
           KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD
Sbjct: 61  KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKKD 103

[Close]

BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYN4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g172530 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.700e-24
Identity = 66/104 (63.46%), Postives = 80/104 (76.92%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLPFVFGAAA+ RV T  A KG++   +EKSFVDWLLGK+ KEDQFYETDP+L+  + 
Sbjct: 1   MASLPFVFGAAATGRVFTTRATKGSSAPTEEKSFVDWLLGKVAKEDQFYETDPLLQKVEE 60

Query: 144 KSSGSTSGKKGGTTSGKKGTVSIPSKKKN-GNGGVFGGLFAKKD 187
           K++G        TT+G+KGTVS+ SKKK  GNGG FGGLFAKKD
Sbjct: 61  KAAG--------TTNGRKGTVSMQSKKKTGGNGGGFGGLFAKKD 96

[Close]

BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
Match: B9SHY8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0611510 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.800e-21
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLP  F AA + RV  A AAKG   +K+EK F+DW+LG +TKEDQFYETDPIL+  + 
Sbjct: 1   MASLPIAF-AAPTVRVYAATAAKGAGGSKEEKGFLDWVLGNLTKEDQFYETDPILKKVEE 60

Query: 144 KSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAKK 186
           KSS       GGTTSG+K +VSIP KKKNG  G FGGLFAKK
Sbjct: 61  KSS-------GGTTSGRKNSVSIPQKKKNGGFGGFGGLFAKK 94

[Close]

BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
Match: A0A067LGP2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08495 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.500e-18
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLP VF A    RV  A A K    +K+EKSF+DW+LG + KEDQFYETDPIL+  + 
Sbjct: 1   MASLPIVF-APPKVRVYAATATKEAGGSKEEKSFLDWVLGNLAKEDQFYETDPILKKVEE 60

Query: 144 KSSGSTSGKKGGTTSGK-KGTVSIPSKKKNGNGGVFGGLFAKKD 187
           K+S        GTTSG+ + +VSIP KKKNG  GVFGGLFAKK+
Sbjct: 61  KNS-------SGTTSGRGRNSVSIPQKKKNGGNGVFGGLFAKKE 96

[Close]

BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
Match: I6Y9K3_LINUS (Thylakoid soluble phosphoprotein OS=Linum usitatissimum GN=TSP9 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.400e-15
Identity = 59/108 (54.63%), Postives = 71/108 (65.74%), Query Frame = 1


		  
Query: 84  MSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGDV 143
           M+SLP  F  AA  RV  A AAKG+  +K+EK   DW++G + KEDQFYETDPIL   + 
Sbjct: 1   MASLPISFTTAA--RVFAATAAKGSGGSKEEKGPWDWIVGTLIKEDQFYETDPILNKTEE 60

Query: 144 KSSGSTSGKKG-----GTTSGKKGT--VSIPSKKKNGNGGVFGGLFAK 185
           KS G T+  +G     GTTSG+KGT  VS+P KKK G    FGGLFAK
Sbjct: 61  KSGGGTTSGRGTTSGRGTTSGRKGTTTVSVPQKKKGG----FGGLFAK 102

[Close]

BLAST of Spo21021.1 vs. TAIR (Arabidopsis)
Match: AT3G47070.1 (LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope)

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-9
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 1


		  
Query: 83  IMSSLPFVFGAAASSRVVTAAAAKGTAETKQEKSFVDWLLGKITKEDQFYETDPILRGGD 142
           ++SSL   F A A+ RV   +   G+   K+EK+ +D++LG +TK+DQFYET+P+L+  D
Sbjct: 1   MVSSLLMSF-APATVRVYATSTKGGSGGPKEEKNPIDFVLGFMTKQDQFYETNPLLKKVD 60

Query: 143 VKSSGSTSGKKGGTTSGKKGTVSIPSKKKNGNGGVFGGLFAK 185
            K  G+T+G +G    GK    +   KK  G  G  G LF K
Sbjct: 61  EK-EGTTTGGRGTVRGGKNSAPTPVPKKSEGGFGGLGSLFKK 100

The following BLAST results are available for this feature:

BLAST of Spo21021.1 vs. NCBI nr
BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
BLAST of Spo21021.1 vs. ExPASy Swiss-Prot
BLAST of Spo21021.1 vs. TAIR (Arabidopsis)

BLAST of Spo21021.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|27529048\|emb\|CAD45559.1\|	1.3e-46	100.	thylakoid soluble phosphoprote...	[more]
gi\|88192991\|pdb\|2FFT\|A	1.5e-36	98.8	Chain A, Nmr Structure Of Spin...	[more]
gi\|731348658\|ref\|XP_010685599.1\|	6.7e-24	63.4	PREDICTED: uncharacterized pro...	[more]
gi\|255569279\|ref\|XP_002525607.1\|	6.9e-21	61.7	PREDICTED: uncharacterized pro...	[more]
gi\|802538465\|ref\|XP_012067962.1\|	9.4e-18	56.7	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo21021.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
Q8GT36_SPIOL	8.7e-47	100.	Thylakoid soluble phosphoprote...	[more]
A0A0J8BYN4_BETVU	4.7e-24	63.4	Uncharacterized protein OS=Bet...	[more]
B9SHY8_RICCO	4.8e-21	61.7	Putative uncharacterized prote...	[more]
A0A067LGP2_JATCU	6.5e-18	56.7	Uncharacterized protein OS=Jat...	[more]
I6Y9K3_LINUS	1.4e-15	54.6	Thylakoid soluble phosphoprote...	[more]

BLAST of Spo21021.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo21021.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G47070.1	3.8e-9	40.2	LOCATED IN: thylakoid, chlorop...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021584	Thylakoid soluble phosphoprotein TSP9	PFAM	PF11493	TSP9	coord: 104..184 score: 7.8
None	No IPR available	PANTHER	PTHR36370	FAMILY NOT NAMED	coord: 93..186 score: 7.8
None	No IPR available	PANTHER	PTHR36370:SF1	SUBFAMILY NOT NAMED	coord: 93..186 score: 7.8
None	No IPR available	unknown	SSF144256	TSP9-like	coord: 104..186 score: 1.96