Spo21043.1 (mRNA)

Overview
NameSpo21043.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionSmall nuclear ribonucleoprotein E
LocationSpoScf_00101 : 214750 .. 222971 (+)
Sequence length1537
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGCTAAGGCTTACCGATGTGTGTTGTGTTACCGGTTGGGGGTTCCTTTGTTCTCTGTTACGGCGCCATGTTCTGCTTGTTCCAGGGTCTTTGCGGGAGACATCTTTGGTGATCATGCGGTGTCATGTGCTGGCATCGTGGGTATTAAGCATCGACATAATGTGGTTCGGGATACCCTTGTTGATGTTTGTTATCGCTCTGGGATTCCGGCACGGAAAGAGGTTGATATTGGTCTACCTGGAGGGAACGATGGAGCTCTCCGACCAGCAGACGTGTTGCTCTACTCTTGGGACCGGGGCTGTGATGTGTTTGTTGACTTGACGGGATCATCTCCTTTGACACAATCTGGGTTGTCTGGCTTTGCTCCGGGCCGGGTTGTGACTGATGCGGCTATTCGGAAACGGGTCAAGTACGAAGCACGTTGCAGGGCCATTGGTTATGGGTTTCTTCCGTTCCCTTTCTCTTCTTTGGGGGAGCTGGATAAGGATGCTGTTGCGTTGCTGAAGCGGATTCAGAAGTTTTCCAGGACACAGGACATTGGGGCTCGTGCTGCTGCTCATATTTTCACTAGGATAGGCTTTGCTATAGCCAGGGGAGTGGGGGCCCAGATTGTATCTCGGCTTCCCACTAACTATTTGTAAAATATTTGACTTTGTTGGCATTTGATTTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAATAATAATAATAATAAAAATAAAATAATAATATCTTCAAGAGTTGAAGCTTGGGCCTAGATATTACGTAAGAGTAATAAGGTTTTAGTTATTTGAAAACAAAAACTAAAACAGTTTGAAGGGGAAAAAAGCCAAAAATGAAATCAGTTGTCTGTTTTTGTAAAACAGAAAACTGAAAACTGGAAATGGTGTCGAACAAGCCCTAAGCTCAAATAAGAAGTTTTAAAAGCTTGTTTAAGCTCGAGTTAGCCGGAACAATATTACTCTATAATCCTTCTTAGTAACTTAGCTCGAAGTCTCGAACAAACTAAAACCCGGCTTGAGTCGTTTCCAACAGCCTAAACGAGCGGTTTTGTTGTTGGTCGTATTTCTCTATTTCCTGGTTTTAACATTTGCAGGAGGAAGTCTTTGTCACAAGACTTGTGTCCATATTGGACACAAGTGAGTACCAATACAGAATTTGGAGTACCAATACAGAATATGTTAGTACCAATACAAATTATGTGAATACCAATAATAACACATATGACTTATATTGGTGGTATTTCTAAGTAATTTTACATTTTGGTATTGACATAGTATGTGTTGGTACTCAAGATGATTGTATTTGGATCAAGTCACTTGAGGTTTAGAAACCCTCCATTTGCAAGGGGGTAAGTTGTTGTTTTGTTGGTCGTAGTTCTTTATTTCCAGAGGTACTATTCAGGGGTTTTAGCAGCGCAGAGCAATTTCGAAACAGCAGCCATGGCGAGCACTAAAGTCCAGCGGATTATGACCCAACCTATCGTAATTTCACTGCTTCTTCTCTTCCATTCTCAATTTTCTTCTTAATTTATGGTCTAACTCATATTCTTGTTTTTTGTTTTTTCGCTGTTTTTTTCTCCGATTCTCGTATCTTCCAGAACCTGATATTCAGGTTTCTTCAAAGCGTAAGCCCCAAGCTCATTGCTACACCAAATTTCATATTTGTTGTTTATTGCTTCACATTATTCTGAATTTAATTGGTTTATTTTGGATTCAGAAAGCTCGGATTCAGATTTGGCTGTTTGAGCAGAAAGATGCGAGGATTGAAGGCCGCATAATTGTAAGTTTTTGTTAACTAATTTTATTTTATTTTTCAATAATGCTTTATTGTTGATGAAAATTAAATTTTAGGGTTCTACATGCTTGAGCTTGAGGGTTTTGTTTGTGAGTAACTCTGTGTGTATATTGATTTATTTGCTAGAAATTAGATTTTTTTTATGATTATGTAGTTGATCAGCATCTATTTTGGTACATTTCTGGATGAAATCTAATACTTCGTATATTAAATTCACCAACAAAAATAGAGAAAAAGAAATTAAGAAATTAATGTTCACTAAAATCTGGCAGGCTGAAAAGATTTTGTTCATTTGATTGAAATATGTACTATCAAGTTCGCGTAGGATCATTGAGATCTCTAGTAAACATGTTCCACATGGTTTCTCTTCTTTGATTGGTAATGGATAGGGATGACAGGGGTCCAGGACCTGTTGGACCCTACCCTACAATTAGGGTATGGGTCTTAATTTTTAAGACCCTATAGGGTAAGGGTAGGGATGGGTATAGGACGTATTGGGTAGGGTAGGGTAAGGGTCTCATTTTTTCAAACCCATATCCTACACAGACCCTACCCGTGGACCCTTATGACTCAAACCCTACCCAGACCCTAAACTAAAGCCGCTCAAATTTATGAAAACATAAAAAAGAATTATATAAAAAACAAAATCCTAAAGCCATTCACAAAATTACCTCTACTCTTCTAAAAGTAAGCTACAACTACCACTCTCTAAGTTAAAATCCTAAACGTTGTGTAGTTAGGAACTTGAATTTTGTAGTTTATGAGCTTAGTACATTAAACTGTGATGTGTTAAAGGAAAGACAATAATGGTTTTTGGAGACTAACTATTTATTTGTTTTAAATTGTCAAATTAATTGTTTGTCTTGTATTATTTTTTGCGCATTAGATATAATTATACACAAAAAATGCCGATAAAAGTTATCAAAAAAAGAGGCATCGTTGACCCACTCTAGACCCTAGACCCTACCCATACCCTACCAGATCCATAGGGTCCGGATAAGAGTCTTATAATTTTAGACCCTACAGGGTAGGGGTAGGGGTAGGGTATGGTTATACGTCAAAAATTAGGGCTCGGGTCCGGGTATTGCTAGACCCTACCCAGACCCTACCCATTGTCATCTCTAGTAATGGAGTGTATCTTCAGGTGAGTTTTACATTGGAGTTCATAACTTCATATACTTCTCTATGGATGTAATATTGGGCAATGGGATTATAGATTGTGTGAAGTTTGATTATGATGTTTGCATCTTCATTAAAGGGGGCTATGAGGCAAGAATTACTAGTGCTTTTTGATGTTGGTTTCTTCCTCAGTTATTCTACATGGCAGTGATACAACGAAGAGCAAGAAAATGAAATAAGGCATAGAAATTTTCAAAAAAAAAAAAGAATTAAAAAAAGAAACTGGGTTGTCACATGTTGAGATCCCTAAGCACACTATTTATTTCTTGGATATGCATTTCACGTGGGTTCTAATGTTTTGAATTGGTACATTACTCCCGCTGTACTTTATTAGGAGTCACATGTTGACCGACACACGTATTAAGGAAGGAGAGTTGAATCTAATAAAATTAATGAAGCAAGTGGGGGAGGGAGTAATAAAAAAATAGAAAAAAGATGAAGGGAAAAATATTTTAATCAAAGTAGAGAGGGAGTTTATTGTAGTGGTGGTCCCTAAAGCAAGTGGTGGGGTAGAAAAGTTACTAAAAATGAAAATATGACTTGGTGACTCCTAAATTCCTAATAAAATACGGCCGGAAATGGTAAGTGTGATTCCTAATAAAATACGGAGGGAGTATTTAGAATGTTTGATTGGATGGCCATTAGTTGTTTTGACGGACCATTATTCATCTATCCTTCTCCTTCCATCCTCCTCTACTGTTTTCTTAATAGGTGGACTACCCTTTCTCACCTTCACCACCATTCCTCTCACGTTCTTCTGTCGTCCCTCATTCTCCCTCTCATTTTTCACATCTTTCTTTTCTCCGGGTGACTGGGAAAAGACTAAACATAGGGTGTGGTCACATGTGTTAGTTTGATTATTGATTGTACTTTTCCAGTTTTTTTGATTCAAAACTGGGTGGTTAAATCGGATGATTCATGATTGTGCGAAGTAACATTATCAGGTACAAAGAACAAGGTATTGGTCTTGCCTTGGTTGATTAATGTTGGAGGTTTCAGGAGATCAGAACCCTTTTTCCTGTTGTCTTGATTTTCTTGTTATGGTGCTGTCTTGGTTTTGAAAGAAAGTTATGGTGTGGTAGTTGTAAGGGCTGATGATCTCTATAATGTTGATCTTCTTTCATTCTTTGCTATTGATATCATCTCTTCGCTGCCAGTTCCCTAAGGTTTATGCATCATTAGGTTAGGTCAATGATTCTACTTTTGCTCATTGGCCATTTTTATGGTCCGCCAAAAATGGTAGGTGTTTACTGTTTAGTAGTTTCATGAATGGGGAAAGAGTTGTGCAGTGGGCTTGTGGGGGGAGGGTAAGACAATGGTGGGTGTGGAACAGGGTAGGGGAAATTGTTAGGATCAACAACAGCTTCAGCAAGGTTGGCTTGGTTCTGATCGGGCTTCTTCTTGACCCTGCAATCTCTGGACTTGTGACCAGCCTTCCCACATTCAAAACAGTTTTCCTTAAACTTATACTTCTGAATTTTCCCCTTGAGGCTGGAACTGACTGCCCTTCTCCTTAAACCTATCAGAACTGAAATTATCCTTAGGTTCAACAAGATTAGCTTTAGCAGAACCTGAAAACACAGATTAACCCTTATCCTTAATACGGTTCTCCTCCTCAATTTCCTGGTGACCTACGAGCTTCTCTAAGGTAACGTCTTTCTTCTTATGCGTTAACTGGTTTCTAAAATCTTTCCACGAGGGTGGCAGTTTCTCAATCAGAACAATAACAAGCGTGATATCACAAATACACAGACCCTCAGCAGTCATGGAAATGCACACATTCTCATAAGCATGAATCTGATCTATTATAGGCTTATCTTCCTTAACTTGAAAACCTAACCACTTAACGCTTAGTACCAGCATCATCAGTTCCATACTTCTTATCTAATGCATCCCAAATTTTCCTAGCATGATTATAACCCATATAAATATCAAGTAATTCATTCGACATATGATGCAACAACATGCCCTTACATGTTCTATCGTCCTTAGCAAACTTCAACTCAAAATCATGCAAATCAGATTCATCATCAGGTTTCACAACATCAGCAATAACTTACGCAACATCAATTTGTTCTAAATAAAATCGCATCCTAACAGCCCAATGTTTATAGTTCTTTCCACCAAGAGGTTCTAACTTAGACATATCAGGAATTAGGAATTTCAAATTGAAAGCCATTTTAGATTGTTAGTAATAAAACAATTAGAACAACTTATCTGGATGTTACCTTAGTTTAAAAAGGCGCAAGGCGCACTAAGACGCACAAGGGTCATGGATCCTAGGCGCAAGGCTCAGGCGCGCGCCTTTTGGATACAAGGCGCACATAATTTTCTAATAAACTTTAAATTCGGTATAGAAAAAAATTAACACAATTTATACTCAAAACAACATATTTCTATTGGAGTGCCATATTTTCTTGTCGGTTCATAAGCATTGCGTGATCACGTCCATGGAGTGCCAGAATTAGAACCTTCCATGGTAGTTACAAGCTGGAAGTATGAAAATTAACTCATATTATGCTACTTTCACTACCCAAAAAGCTAAGGTTGTAGAGATATGACCGTTGATAGGTCACATGTGTGTTCATATCATTAAAAAAAAAAAATGTAAATAAAAGATTCATGTCATCCTACTGCGCCTGAAGACTGAAGGCGCATAAGGCGCTGCGCCTTGCGCCTTACCTAAGGCGCGCGAAGGCGCCAAAGGCTGAGCCTAGGTGAGCCTTGCGCGCGCTTTTTTAAACTAAGGATGTTATGAGTACGATTTGAACAATTGTCGTGTTGTGGCCGAACCACTACTCTAAAAGACAATTCCGCGCTACCACGGCGCAGTAGAACGTTTGCGGTTGTCCTCCAAGGTTAACACGACACCAAGGATTGTGTGCACTCACAAGCCTCGATTGGAACATTTGAGGATTTGAGGGAGATAGAGAGTGAGCAGTTTCTGTGTATATGTTTATGAAAATGGAAGTGAGAGGGGGGATAATCTCGATTCTTGAAGATGTATCACCACTAATCAGTAGCTTCAAAACCGAATTCAAAAAAAAAGCAAATCATGCAAGACCATAGCTAAATGCTTAACTAATGAGAGTTACAAAACTGCAACAGCCATAAAACGGCTAGAATAGAATGGGAAGTAGTGGAGCAGTTACAACGGAACAAATTCTGTAATCAATGCCATTAGTGGGTTGATTAATTCTTCTGACCGTTACGGCAAGAATTGCTTTTCTTGCTCAAACCGCTTCTGACCGAAAAGATGGCCCTCAAAACCCACCCAACGCCCGCAAATCGCATTCCCAAGAGCCCACGGCCCGAGCTCGACCTGGCTGGCCAGCCGGCGCGTGTGCATGTGTGTTATGTGTCCACACATACCACTCTCATACTTTCTTAAACAAGTATGCACTCAAGCCCCAAATATAAACAAGGAATGAAGTTGGTATTTTATCAATGTGGGACTTTTCCCATTCCCATTTTCACTCTTTTCTTTTGCACTTTCAACAAGAATTTCTAACAATTTTATATTTACTTTTTTGTTATTTTTTTTTTCTTCTGTTTTTCCATATAGTGAAAGAGGACATAATTATGCTTGAGAAGTTGCCTAGATTTTCTCTTTTTGGTTGCCTAATAACATGTCAAAGGGTTTTGACCTGACTGATGCGGTGAAGATGAGGGAAGAGGAATCAACAATAAGAATCTTTATTTATGTTATAAACCTCTTTTTATCTTGTGAAGCCGCAGAAATTACAACATCATAGAGACTTTTGGAAGACATGGCTCTAAGATAGGGTCTATTTCAATTCTTCTACACTATGTTCTGGATAGGAAGATTTGGAGAGAAAGGGGGTAAAGGATAGGAATCAGAGGGATCCATTTTTCTTCCCCTTTTAATAGACCAAACCCCTCCATTATTGGAATGATTTCTAATGAATATGGAAGCTCACTGTTTCCCTCCCCTCCCTTTCCTCAACAAATGCTAACCAAACAAAGTGCTAGTGAAGGCTTATAATTATCTTTTATGTTTCCGTTATACTGGTATTTGCTAGAATTGTGAACGCATTTGTCAATTGCTGGACTTTTGTTGAGCTTGAGGTATCACTATTGACCAGAAATAATTCGGTAATTACTTTGATCACCTTGTAAATATGTGGAGGATGGTTGGATTGCTTGATTGTTGGAGGACTCTGTCCTATTGGCAATCTGGTGGTTGGGGTGGAGAAGTGGGGTACTGGTTTGTTGAATATAGCTGTGCAGAATTATCTCGTTTCCGCCTCAAAAAGCTTTTTACTTTGCGCATGTCAATATTTGCTGCTGAAATCCATCTCTATATGATTCTATGCCAGCTTTCTTGTGTATTGATACATTTTGATTTGCGATCTCTTCTTCAGGGCTTTGATGAGTACATGAATTTGGTTTTAGAAGATGCTGAAGAGGTGAACGTCAAAAAGAAGACCAGAAAATCACTTGGTAAATTAAGCAGCCAATGTTCGAATCTCTTTATTTGTTATTCCAACTTGATCATGTGTCCAACTTTCTAATCATGGTGCCTCTTATTTTAGGGAGGATCCTTCTGAAAGGAGACAATATTACTCTGATGATGAATACGTAAGTCCAATTTGGTTTTCTTCCCATGTTATTTTTGTTACTCGCTCTTACTTGATAACCTCCCTGTGATTTCTGTTTATCTGAGCTTTATGTTGTATTATTTGTCTGTATATCTGTTGTGCAGGGGAAAATGATACACATGGCTGATGTGCATTTGTTCAGAAGTATTGAAATTGTTGGCCTGGAAGCTATGACAAACTGCTGACCCGACATAGTAGCCTTTTATGCGTAAAACATACTGATTAATGGTGTCTGCGTCAAGCATTCCCCTCCTCTCCGTATTAGCTGAAATGTAGTTAAAGTGAATATTAAGTAGTGGATTTAATTGATTTCTTCGGTCATATGTAAAAGTATTAAGTTTCTTATGGTTGAGGCTCCTGGTGGTGCTTTCCATTTTGGGGCTTTTCTCTCTGTTCTATTAGCTTATGTTACAGAAGAGGGTATATTCAAGTGAACCCTGTTTGTGATTTATCATTTTATCCGATTGTGGAGATTATGATATCTCGTACCAATCTCAAAGCAGTCGAGTAGTTGACCCAGCAGGTGTTAATCTTCCTATGATTGTCCTCTTGATGAATGCATTTTGCTTTACTAGTAACACTAATGGGTGACCC

mRNA sequence

ATGAATGCTAAGGCTTACCGATGTGTGTTGTGTTACCGGTTGGGGGTTCCTTTGTTCTCTGTTACGGCGCCATGTTCTGCTTGTTCCAGGGTCTTTGCGGGAGACATCTTTGGTGATCATGCGGTGTCATGTGCTGGCATCGTGGGTATTAAGCATCGACATAATGTGGTTCGGGATACCCTTGTTGATGTTTGTTATCGCTCTGGGATTCCGGCACGGAAAGAGGTTGATATTGGTCTACCTGGAGGGAACGATGGAGCTCTCCGACCAGCAGACGTGTTGCTCTACTCTTGGGACCGGGGCTGTGATGTGTTTGTTGACTTGACGGGATCATCTCCTTTGACACAATCTGGGTTGTCTGGCTTTGCTCCGGGCCGGGTTGTGACTGATGCGGCTATTCGGAAACGGGTCAAGTACGAAGCACGTTGCAGGGCCATTGGTTATGGGTTTCTTCCGTTCCCTTTCTCTTCTTTGGGGGAGCTGGATAAGGATGCTGTTGCGTTGCTGAAGCGGATTCAGAAGTTTTCCAGGACACAGGACATTGGGGCTCGTGCTGCTGCTCATATTTTCACTAGGATAGGCTTTGCTATAGCCAGGGGAGTGGGGGCCCAGATTAGGTACTATTCAGGGGTTTTAGCAGCGCAGAGCAATTTCGAAACAGCAGCCATGGCGAGCACTAAAGTCCAGCGGATTATGACCCAACCTATCAACCTGATATTCAGGTTTCTTCAAAGCAAAGCTCGGATTCAGATTTGGCTGTTTGAGCAGAAAGATGCGAGGATTGAAGGCCGCATAATTGGCTTTGATGAGTACATGAATTTGGTTTTAGAAGATGCTGAAGAGGTGAACGTCAAAAAGAAGACCAGAAAATCACTTGGGAGGATCCTTCTGAAAGGAGACAATATTACTCTGATGATGAATACGTAAGTCCAATTTGGTTTTCTTCCCATGTTATTTTTGTTACTCGCTCTTACTTGATAACCTCCCTGTGATTTCTGTTTATCTGAGCTTTATGTTGTATTATTTGTCTGTATATCTGTTGTGCAGGGGAAAATGATACACATGGCTGATGTGCATTTGTTCAGAAGTATTGAAATTGTTGGCCTGGAAGCTATGACAAACTGCTGACCCGACATAGTAGCCTTTTATGCGTAAAACATACTGATTAATGGTGTCTGCGTCAAGCATTCCCCTCCTCTCCGTATTAGCTGAAATGTAGTTAAAGTGAATATTAAGTAGTGGATTTAATTGATTTCTTCGGTCATATGTAAAAGTATTAAGTTTCTTATGGTTGAGGCTCCTGGTGGTGCTTTCCATTTTGGGGCTTTTCTCTCTGTTCTATTAGCTTATGTTACAGAAGAGGGTATATTCAAGTGAACCCTGTTTGTGATTTATCATTTTATCCGATTGTGGAGATTATGATATCTCGTACCAATCTCAAAGCAGTCGAGTAGTTGACCCAGCAGGTGTTAATCTTCCTATGATTGTCCTCTTGATGAATGCATTTTGCTTTACTAGTAACACTAATGGGTGACCC

Coding sequence (CDS)

ATGAATGCTAAGGCTTACCGATGTGTGTTGTGTTACCGGTTGGGGGTTCCTTTGTTCTCTGTTACGGCGCCATGTTCTGCTTGTTCCAGGGTCTTTGCGGGAGACATCTTTGGTGATCATGCGGTGTCATGTGCTGGCATCGTGGGTATTAAGCATCGACATAATGTGGTTCGGGATACCCTTGTTGATGTTTGTTATCGCTCTGGGATTCCGGCACGGAAAGAGGTTGATATTGGTCTACCTGGAGGGAACGATGGAGCTCTCCGACCAGCAGACGTGTTGCTCTACTCTTGGGACCGGGGCTGTGATGTGTTTGTTGACTTGACGGGATCATCTCCTTTGACACAATCTGGGTTGTCTGGCTTTGCTCCGGGCCGGGTTGTGACTGATGCGGCTATTCGGAAACGGGTCAAGTACGAAGCACGTTGCAGGGCCATTGGTTATGGGTTTCTTCCGTTCCCTTTCTCTTCTTTGGGGGAGCTGGATAAGGATGCTGTTGCGTTGCTGAAGCGGATTCAGAAGTTTTCCAGGACACAGGACATTGGGGCTCGTGCTGCTGCTCATATTTTCACTAGGATAGGCTTTGCTATAGCCAGGGGAGTGGGGGCCCAGATTAGGTACTATTCAGGGGTTTTAGCAGCGCAGAGCAATTTCGAAACAGCAGCCATGGCGAGCACTAAAGTCCAGCGGATTATGACCCAACCTATCAACCTGATATTCAGGTTTCTTCAAAGCAAAGCTCGGATTCAGATTTGGCTGTTTGAGCAGAAAGATGCGAGGATTGAAGGCCGCATAATTGGCTTTGATGAGTACATGAATTTGGTTTTAGAAGATGCTGAAGAGGTGAACGTCAAAAAGAAGACCAGAAAATCACTTGGGAGGATCCTTCTGAAAGGAGACAATATTACTCTGATGATGAATACGTAA

Protein sequence

MNAKAYRCVLCYRLGVPLFSVTAPCSACSRVFAGDIFGDHAVSCAGIVGIKHRHNVVRDTLVDVCYRSGIPARKEVDIGLPGGNDGALRPADVLLYSWDRGCDVFVDLTGSSPLTQSGLSGFAPGRVVTDAAIRKRVKYEARCRAIGYGFLPFPFSSLGELDKDAVALLKRIQKFSRTQDIGARAAAHIFTRIGFAIARGVGAQIRYYSGVLAAQSNFETAAMASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEVNVKKKTRKSLGRILLKGDNITLMMNT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo21043Spo21043gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo21043.1Spo21043.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21043.1.exon.1Spo21043.1.exon.1exon
Spo21043.1.exon.2Spo21043.1.exon.2exon
Spo21043.1.exon.3Spo21043.1.exon.3exon
Spo21043.1.exon.4Spo21043.1.exon.4exon
Spo21043.1.exon.5Spo21043.1.exon.5exon
Spo21043.1.exon.6Spo21043.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21043.1.CDS.1Spo21043.1.CDS.1CDS
Spo21043.1.CDS.2Spo21043.1.CDS.2CDS
Spo21043.1.CDS.3Spo21043.1.CDS.3CDS
Spo21043.1.CDS.4Spo21043.1.CDS.4CDS
Spo21043.1.CDS.5Spo21043.1.CDS.5CDS
Spo21043.1.CDS.6Spo21043.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21043.1.utr3p.1Spo21043.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo21043.1 vs. NCBI nr
Match: gi|902110388|gb|KNA03701.1| (hypothetical protein SOVF_206410, partial [Spinacia oleracea])

HSP 1 Score: 198.7 bits (504), Expect = 1.400e-47
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 1 

		  

Query: 94  LLYSWDRGCDVFVDLTGSSPLTQSGLSGFAPGRVVTDAAIRKRVKYEARCRAIGYGFLPF 153
           LLYSWDRGCDV VDL  SSPLTQSGLSGFAPGRVVTD AIRKR +YEARCRAIGYGFLPF
Sbjct: 1   LLYSWDRGCDVCVDLMRSSPLTQSGLSGFAPGRVVTDTAIRKR-EYEARCRAIGYGFLPF 60

Query: 154 PFSSLGELDKDAVALLKRIQKFSRTQDIGARAAAHIFTRIGFAIARGVGAQIR 207
            FSSLGELDKDAVALLKRIQKFSR  DI ARAAAHIFTRIGFAIARGVGAQI+
Sbjct: 61  SFSSLGELDKDAVALLKRIQKFSRAHDIEARAAAHIFTRIGFAIARGVGAQIK 112
[Close]
BLAST of Spo21043.1 vs. NCBI nr
Match: gi|902222780|gb|KNA19264.1| (hypothetical protein SOVF_063160 [Spinacia oleracea])

HSP 1 Score: 167.5 bits (423), Expect = 3.500e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           NVKKKTRKSLGRILLKGDNITLMMNT
Sbjct: 61  NVKKKTRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. NCBI nr
Match: gi|902187043|gb|KNA10834.1| (hypothetical protein SOVF_140750 isoform A [Spinacia oleracea])

HSP 1 Score: 166.4 bits (420), Expect = 7.900e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVL+DAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLDDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           NVKKKTRKSLGRILLKGDNITLMMNT
Sbjct: 61  NVKKKTRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. NCBI nr
Match: gi|313586495|gb|ADR71258.1| (small nuclear ribonucleoprotein E [Hevea brasiliensis])

HSP 1 Score: 164.1 bits (414), Expect = 3.900e-37
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD RIEGRIIGFDEYMNLVL+DAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           N+KKKTRKSLGRILLKGDNITLMMNT
Sbjct: 61  NIKKKTRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. NCBI nr
Match: gi|566176981|ref|XP_006381848.1| (small nuclear ribonucleoprotein E [Populus trichocarpa])

HSP 1 Score: 163.7 bits (413), Expect = 5.100e-37
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD RIEGRIIGFDEYMNLVLEDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           N+KKK+RKSLGRILLKGDNITLMMNT
Sbjct: 61  NIKKKSRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QB16_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_206410 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.000e-47
Identity = 102/113 (90.27%), Postives = 104/113 (92.04%), Query Frame = 1 

		  

Query: 94  LLYSWDRGCDVFVDLTGSSPLTQSGLSGFAPGRVVTDAAIRKRVKYEARCRAIGYGFLPF 153
           LLYSWDRGCDV VDL  SSPLTQSGLSGFAPGRVVTD AIRKR +YEARCRAIGYGFLPF
Sbjct: 1   LLYSWDRGCDVCVDLMRSSPLTQSGLSGFAPGRVVTDTAIRKR-EYEARCRAIGYGFLPF 60

Query: 154 PFSSLGELDKDAVALLKRIQKFSRTQDIGARAAAHIFTRIGFAIARGVGAQIR 207
            FSSLGELDKDAVALLKRIQKFSR  DI ARAAAHIFTRIGFAIARGVGAQI+
Sbjct: 61  SFSSLGELDKDAVALLKRIQKFSRAHDIEARAAAHIFTRIGFAIARGVGAQIK 112
[Close]
BLAST of Spo21043.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RK17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063160 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 2.500e-38
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           NVKKKTRKSLGRILLKGDNITLMMNT
Sbjct: 61  NVKKKTRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU94_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140750 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 5.500e-38
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVL+DAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLDDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           NVKKKTRKSLGRILLKGDNITLMMNT
Sbjct: 61  NVKKKTRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. UniProtKB/TrEMBL
Match: I3NMM1_HEVBR (Small nuclear ribonucleoprotein E OS=Hevea brasiliensis GN=SNRPE PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 2.700e-37
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD RIEGRIIGFDEYMNLVL+DAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           N+KKKTRKSLGRILLKGDNITLMMNT
Sbjct: 61  NIKKKTRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. UniProtKB/TrEMBL
Match: A9PB49_POPTR (Small nuclear ribonucleoprotein E OS=Populus trichocarpa GN=POPTR_0006s18800g PE=2 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.600e-37
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD RIEGRIIGFDEYMNLVLEDAEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           N+KKK+RKSLGRILLKGDNITLMMNT
Sbjct: 61  NIKKKSRKSLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. ExPASy Swiss-Prot
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.200e-27
Identity = 57/81 (70.37%), Postives = 73/81 (90.12%), Query Frame = 1 

		  

Query: 227 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEVNVKK 286
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ + RIEG IIGFDEYMNLVL+DAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 287 KTRKSLGRILLKGDNITLMMN 308
           K+RK LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89
[Close]
BLAST of Spo21043.1 vs. ExPASy Swiss-Prot
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.200e-27
Identity = 57/81 (70.37%), Postives = 73/81 (90.12%), Query Frame = 1 

		  

Query: 227 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEVNVKK 286
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ + RIEG IIGFDEYMNLVL+DAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 287 KTRKSLGRILLKGDNITLMMN 308
           K+RK LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89
[Close]
BLAST of Spo21043.1 vs. ExPASy Swiss-Prot
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.200e-27
Identity = 57/81 (70.37%), Postives = 73/81 (90.12%), Query Frame = 1 

		  

Query: 227 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEVNVKK 286
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ + RIEG IIGFDEYMNLVL+DAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 287 KTRKSLGRILLKGDNITLMMN 308
           K+RK LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89
[Close]
BLAST of Spo21043.1 vs. ExPASy Swiss-Prot
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.200e-27
Identity = 57/81 (70.37%), Postives = 73/81 (90.12%), Query Frame = 1 

		  

Query: 227 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEVNVKK 286
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ + RIEG IIGFDEYMNLVL+DAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 287 KTRKSLGRILLKGDNITLMMN 308
           K+RK LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89
[Close]
BLAST of Spo21043.1 vs. ExPASy Swiss-Prot
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.200e-27
Identity = 57/81 (70.37%), Postives = 73/81 (90.12%), Query Frame = 1 

		  

Query: 227 KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEVNVKK 286
           KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ + RIEG IIGFDEYMNLVL+DAEE++ K 
Sbjct: 9   KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 287 KTRKSLGRILLKGDNITLMMN 308
           K+RK LGRI+LKGDNITL+ +
Sbjct: 69  KSRKQLGRIMLKGDNITLLQS 89
[Close]
BLAST of Spo21043.1 vs. TAIR (Arabidopsis)
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 154.8 bits (390), Expect = 8.400e-38
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD RIEGRI GFDEYMNLVL++AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMNT 309
           ++KK TRK LGRILLKGDNITLMMNT
Sbjct: 61  SIKKNTRKPLGRILLKGDNITLMMNT 86
[Close]
BLAST of Spo21043.1 vs. TAIR (Arabidopsis)
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 154.8 bits (390), Expect = 8.400e-38
Identity = 78/85 (91.76%), Postives = 82/85 (96.47%), Query Frame = 1 

		  

Query: 223 MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDARIEGRIIGFDEYMNLVLEDAEEV 282
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKD RIEGRI GFDEYMNLVL++AEEV
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 283 NVKKKTRKSLGRILLKGDNITLMMN 308
           ++KKKTRK LGRILLKGDNITLMMN
Sbjct: 61  SIKKKTRKPLGRILLKGDNITLMMN 85
The following BLAST results are available for this feature:
BLAST of Spo21043.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902110388|gb|KNA03701.1|1.4e-4790.2hypothetical protein SOVF_2064... [more]
gi|902222780|gb|KNA19264.1|3.5e-38100.hypothetical protein SOVF_0631... [more]
gi|902187043|gb|KNA10834.1|7.9e-3898.8hypothetical protein SOVF_1407... [more]
gi|313586495|gb|ADR71258.1|3.9e-3796.5small nuclear ribonucleoprotei... [more]
gi|566176981|ref|XP_006381848.1|5.1e-3796.5small nuclear ribonucleoprotei... [more]
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BLAST of Spo21043.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QB16_SPIOL1.0e-4790.2Uncharacterized protein (Fragm... [more]
A0A0K9RK17_SPIOL2.5e-38100.Uncharacterized protein OS=Spi... [more]
A0A0K9QU94_SPIOL5.5e-3898.8Uncharacterized protein OS=Spi... [more]
I3NMM1_HEVBR2.7e-3796.5Small nuclear ribonucleoprotei... [more]
A9PB49_POPTR3.6e-3796.5Small nuclear ribonucleoprotei... [more]
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BLAST of Spo21043.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RUXE_BOVIN8.2e-2770.3Small nuclear ribonucleoprotei... [more]
RUXE_HUMAN8.2e-2770.3Small nuclear ribonucleoprotei... [more]
RUXE_MOUSE8.2e-2770.3Small nuclear ribonucleoprotei... [more]
RUXE_PIG8.2e-2770.3Small nuclear ribonucleoprotei... [more]
RUXE_CHICK8.2e-2770.3Small nuclear ribonucleoprotei... [more]
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BLAST of Spo21043.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT2G18740.18.4e-3890.7Small nuclear ribonucleoprotei... [more]
AT4G30330.18.4e-3891.7Small nuclear ribonucleoprotei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 242..305
score: 5.5
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 241..307
score: 3.1
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 234..306
score: 1.94
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 223..308
score: 9.4
NoneNo IPR availableGENE3D2.30.30.100coord: 231..306
score: 9.2

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid