Spo21317.1 (mRNA) | SpinachBase

Overview


Name	Spo21317.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Complex 1 protein, LYR family protein
Location	chr2 : 17437197 .. 17437466 (-)
Sequence length	270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGCGCCAGCAAGAGCAGAAATCCTGCATCTATTCCGGTCACTCCTGCGTGAAGCTCGTAAATTCCCCGACTACAATATCAGAGAATACGCTAAGAGAAGAACCATCGATGCCTTCCGTCACAACAAATCACTATCAGATCCTTCTTCCATCTCTCAAGCCTTCGCTGAGGCCAACTCTCAGCTCGACGTCGCTAAGCGCCAAGCTGTTGTTTACTCCCTTTATGCCCCCAAAGTTCGGAGCATTATGGAAGTCCCCAACGAATAG

mRNA sequence

ATGACTGCGCCAGCAAGAGCAGAAATCCTGCATCTATTCCGGTCACTCCTGCGTGAAGCTCGTAAATTCCCCGACTACAATATCAGAGAATACGCTAAGAGAAGAACCATCGATGCCTTCCGTCACAACAAATCACTATCAGATCCTTCTTCCATCTCTCAAGCCTTCGCTGAGGCCAACTCTCAGCTCGACGTCGCTAAGCGCCAAGCTGTTGTTTACTCCCTTTATGCCCCCAAAGTTCGGAGCATTATGGAAGTCCCCAACGAATAG

Coding sequence (CDS)

ATGACTGCGCCAGCAAGAGCAGAAATCCTGCATCTATTCCGGTCACTCCTGCGTGAAGCTCGTAAATTCCCCGACTACAATATCAGAGAATACGCTAAGAGAAGAACCATCGATGCCTTCCGTCACAACAAATCACTATCAGATCCTTCTTCCATCTCTCAAGCCTTCGCTGAGGCCAACTCTCAGCTCGACGTCGCTAAGCGCCAAGCTGTTGTTTACTCCCTTTATGCCCCCAAAGTTCGGAGCATTATGGAAGTCCCCAACGAATAG

Protein sequence

MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQLDVAKRQAVVYSLYAPKVRSIMEVPNE

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21317	Spo21317	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21317.1	Spo21317.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21317.1.CDS.1	Spo21317.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21317.1.exon.1	Spo21317.1.exon.1	exon

Homology

[Close]

BLAST of Spo21317.1 vs. NCBI nr
Match: gi|902184451|gb|KNA10296.1| (hypothetical protein SOVF_145730 [Spinacia oleracea])

HSP 1 Score: 171.8 bits (434), Expect = 5.400e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN
Sbjct: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 90
          SQLDVAKRQAVVYSLYAPKVRSIMEVPNE
Sbjct: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 89

[Close]

BLAST of Spo21317.1 vs. NCBI nr
Match: gi|731362971|ref|XP_010693177.1| (PREDICTED: LYR motif-containing protein 4B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.4 bits (368), Expect = 2.400e-32
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

		  
Query: 4  PARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQL 63
          PARAEI+H++RSLLREARKFPDYNIREYAKRRTID F HNKSLSDPSS++QA A+A SQL
Sbjct: 3  PARAEIIHIYRSLLREARKFPDYNIREYAKRRTIDGFHHNKSLSDPSSVAQALADAKSQL 62

Query: 64 DVAKRQAVVYSLYAPKVRSIMEVPNE 90
          ++AKRQ VVYSLYAPK +SIMEVPNE
Sbjct: 63 EIAKRQTVVYSLYAPKFKSIMEVPNE 88

[Close]

BLAST of Spo21317.1 vs. NCBI nr
Match: gi|698528689|ref|XP_009761176.1| (PREDICTED: LYR motif-containing protein 4 [Nicotiana sylvestris])

HSP 1 Score: 127.5 bits (319), Expect = 1.200e-26
Identity = 62/86 (72.09%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLL+ AR+FPDYNIREY KRRTID FR NK LSDPS ++ AF+E  
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86

[Close]

BLAST of Spo21317.1 vs. NCBI nr
Match: gi|460380605|ref|XP_004236045.1| (PREDICTED: LYR motif-containing protein 4 [Solanum lycopersicum])

HSP 1 Score: 127.1 bits (318), Expect = 1.500e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86

[Close]

BLAST of Spo21317.1 vs. NCBI nr
Match: gi|697139318|ref|XP_009623746.1| (PREDICTED: LYR motif-containing protein 4 [Nicotiana tomentosiformis])

HSP 1 Score: 126.3 bits (316), Expect = 2.600e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLL+ AR+FPDYNIREY KRRTID FR NK LSDPS ++ AF+E  
Sbjct: 1  MASPSRGEVLTLFRSLLKTARQFPDYNIREYTKRRTIDGFRQNKDLSDPSKVAAAFSEGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          +QL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 AQLEVAKRQAVVYSLYAPKVKSVMEL 86

[Close]

BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUX3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_145730 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.800e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN
Sbjct: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 90
          SQLDVAKRQAVVYSLYAPKVRSIMEVPNE
Sbjct: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVPNE 89

[Close]

BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEC0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g046300 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.700e-32
Identity = 71/86 (82.56%), Postives = 80/86 (93.02%), Query Frame = 1

		  
Query: 4  PARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQL 63
          PARAEI+H++RSLLREARKFPDYNIREYAKRRTID F HNKSLSDPSS++QA A+A SQL
Sbjct: 3  PARAEIIHIYRSLLREARKFPDYNIREYAKRRTIDGFHHNKSLSDPSSVAQALADAKSQL 62

Query: 64 DVAKRQAVVYSLYAPKVRSIMEVPNE 90
          ++AKRQ VVYSLYAPK +SIMEVPNE
Sbjct: 63 EIAKRQTVVYSLYAPKFKSIMEVPNE 88

[Close]

BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: A0A0V0GXH7_SOLCH (Putative LYR motif-containing protein 4-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86

[Close]

BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: K4BL51_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86

[Close]

BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Match: M1CAK5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400024653 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.100e-26
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M +P+R E+L LFRSLLR AR+FPDYN+REY KRRTID FR NK LSDPS ++ AF++  
Sbjct: 1  MASPSRVEVLTLFRSLLRTAREFPDYNVREYTKRRTIDGFRQNKDLSDPSKVTAAFSDGR 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEV 87
          SQL+VAKRQAVVYSLYAPKV+S+ME+
Sbjct: 61 SQLEVAKRQAVVYSLYAPKVKSVMEL 86

[Close]

BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_TAEGU (LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.200e-12
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R+LLRE+++F  YN R YA RR  DAFR NK+++D   I +   +A 
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 SQLDVAKRQAVVYSLYAPKVRSIMEVP 88
          + L+V +RQ  +  +YA + + I+E P
Sbjct: 61 ANLEVIQRQGTIDHMYATE-KLIIERP 86

[Close]

BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYM4B_SALSA (LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.400e-11
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1

		  
Query: 3  APARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQ 62
          A   A++L L+R L++E+ KFP YN R YA RR  DAFR N+S+ DP  + Q   +    
Sbjct: 2  AACTAQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDN 61

Query: 63 LDVAKRQAVVYSLYAPKVRSIME 86
          LD+ +RQ  +  +Y P  ++I+E
Sbjct: 62 LDMIRRQVAIGKMY-PTQKTIVE 83

[Close]

BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_HUMAN (LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.000e-10
Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R++LRE+++F  YN R YA RR  DAFR NK++ DP  I     +A 
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 SQLDVAKRQAVVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

[Close]

BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_MOUSE (LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.900e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R+++RE++ F  YN R YA RR  DAFR NK++ DP  I     +A 
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 SQLDVAKRQAVVYSLYA 78
            L++ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

[Close]

BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Match: LYRM4_BOVIN (LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.600e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 1

		  
Query: 1  MTAPARAEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEAN 60
          M A +RA++L L+R++LRE+++F  YN R YA RR  DAFR NK++ DP  I     +A 
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 SQLDVAKRQAVVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

[Close]

BLAST of Spo21317.1 vs. TAIR (Arabidopsis)
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 97.8 bits (242), Expect = 3.500e-21
Identity = 48/80 (60.00%), Postives = 63/80 (78.75%), Query Frame = 1

		  
Query: 7  AEILHLFRSLLREARKFPDYNIREYAKRRTIDAFRHNKSLSDPSSISQAFAEANSQLDVA 66
          +E+L L R+LLR  R+FPDYNIREY+KRRT+D FR NK+L+DPS +++A+AEA  QL VA
Sbjct: 5  SEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLFVA 64

Query: 67 KRQAVVYSLYAPKVRSIMEV 87
          +R   VY  Y PK ++IMEV
Sbjct: 65 ERVLKVYLAYPPKTKNIMEV 84

The following BLAST results are available for this feature:

BLAST of Spo21317.1 vs. NCBI nr
BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
BLAST of Spo21317.1 vs. TAIR (Arabidopsis)

BLAST of Spo21317.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902184451\|gb\|KNA10296.1\|	5.4e-40	100.	hypothetical protein SOVF_1457...	[more]
gi\|731362971\|ref\|XP_010693177.1\|	2.4e-32	82.5	PREDICTED: LYR motif-containin...	[more]
gi\|698528689\|ref\|XP_009761176.1\|	1.2e-26	72.0	PREDICTED: LYR motif-containin...	[more]
gi\|460380605\|ref\|XP_004236045.1\|	1.5e-26	70.9	PREDICTED: LYR motif-containin...	[more]
gi\|697139318\|ref\|XP_009623746.1\|	2.6e-26	70.9	PREDICTED: LYR motif-containin...	[more]

BLAST of Spo21317.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QUX3_SPIOL	3.8e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BEC0_BETVU	1.7e-32	82.5	Uncharacterized protein OS=Bet...	[more]
A0A0V0GXH7_SOLCH	1.1e-26	70.9	Putative LYR motif-containing ...	[more]
K4BL51_SOLLC	1.1e-26	70.9	Uncharacterized protein OS=Sol...	[more]
M1CAK5_SOLTU	1.1e-26	70.9	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo21317.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
LYRM4_TAEGU	8.2e-12	42.5	LYR motif-containing protein 4...	[more]
LYM4B_SALSA	2.4e-11	40.9	LYR motif-containing protein 4...	[more]
LYRM4_HUMAN	2.0e-10	44.1	LYR motif-containing protein 4...	[more]
LYRM4_MOUSE	5.9e-10	41.5	LYR motif-containing protein 4...	[more]
LYRM4_BOVIN	7.6e-10	41.5	LYR motif-containing protein 4...	[more]

BLAST of Spo21317.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G61220.1	3.5e-21	60.0	LYR family of Fe/S cluster bio...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 8..64 score: 4.3
None	No IPR available	PANTHER	PTHR13166	PROTEIN C6ORF149	coord: 1..86 score: 3.4