Spo21352.1 (mRNA)

Overview
NameSpo21352.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionRNA polymerase II transcriptional coactivator kelp, putative
Locationchr6 : 39633515 .. 39637828 (-)
Sequence length1519
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTACCAAAACAATGCCATGAATATAAAAGAAATCACCTACGCATTCATTCGGTCCTTCCAAAAACGGAATATAACTTGCACTTTCACAGCTGCAGCCTGCACGAACGCCAGTTCATCAGACTTACAGAGAGTGGAAAATGGACGCGGCGACGAAGGAGAAGGTGGAAGAGACGGTGGTAGAAATCCTTCGTACCGCCGATATGCTAAAGATGACCGAGTTTAACGTCCGCACTCTCGCCGGCGAGAAGCTCGGTATAGACCTTTCTGAACCTTCTCGTAAGAAGTTTGTCCGGCAGATTGTTGAAGGTTTCCTTCAACAGCAGCAGCAAATCGATGCTCCTGAAGGCGGTAGCGGCGGCGGCGAAGTAGAAGAGGTACAACAAGAAGAAGAACAGGAAGAGGAGGAGGAAGAGAGTAATAAGAGACGTTCTGATGGCAAAGAGTATGACGAAGCCGGCGATCTTATCATCTGCCAAGTTAGTTCTTTAATTCCTTTTTCTGTTTTGAACTTATTCAATTTGTGATTTTGCAATACTTGTTTTTAAAGCTTGAATTTCTGAAATAATTTGTGATTTTGTAAACCCTAGTTTCAGGTTTTTGTGTATTGTCGCTTGAAATGCTTTAATTTACCGATTAGTTCTGTCATTTTCGGTTTAATTTTGTCTATGTTATGTGTATTTGTTCATGAGCTGGGGTAACTAGCTTGTCAGAATTGGATTTGATTGGATGATTTTTTCATGCAGTTGTCTGAAAAGCGAAGAGTGACGATTCAGGATTTCAAGGGGAAGACATTGGTGTCAATTAGGGAATACTATAAGAAGGATGGAAAATTTCTTCCTACCTCTAAAGGTATGAGTCTACTATTTTACTTCCGGCCTGCCGCCATCATTGTATTGGCTAGATATATGTGCTGCTGCATTGGGTTTTCTCTATGGTACATTGGTACTTCTAGCTTCAAATTGTGAACTTTATTGTCATTCGATATTTGCAAATTCCATGTGTTTTCCACTTCTCCTTGAAGCTAATTATGTAGTTTCCCTAATTTACAATGCATATTTTGAGTGAAGTGATTGTTGATTGTTTGGTATTTTGGTGAATAATTGTACTATCAGAGTTTTAGAGATACTTGTACCCGCCTACCCGGTTACTGAGATGAGTCACTAGTGTTGGGCATGGGTACCTGTCAATTTGTCTAGTTTTGCCACAACTTGTTGCAGTTTTTGGTTTGAAATGAAGTGTAAAGTATTTGTGAGGACTATAAGTCTATAACCATGTTGAAGTGAATACTTGAGGTGAAAATAAGAGCAGAAGGAATGTAGCTTGTAACTATTTTTTGACATATTTTTCAATTTTATAAATAGGAAAATGGCATGGTGTTACGTGTTTATATATGTATTTGCGGGGCTGTGCGCTTAAGTATACGTTTCAGATTTTTAACCGTAAAGCTTTATCAGCGATGGCATTGTTAGGATGAGACTGGAATCTGTGAGTGTTCTATCTTTGACGAGTGTTTATAATGTATTTGCCTCGAACCAAATAGCAGGTCCGTGGTGAAGCAATCTATTTTAAGGAGCATATTGAATTTTGATGTTTATGCTGAATTTGAGTCAAAATCTGAAATGCTGTATGTGGGTCAGATATTGAAAGAGTCATGATTCAGTAGTTCTGTATGTTATATAACGTGGGCAGCATGTCATTTACTGCTTCTTCTTCCTCTGCAATGATTCTATAGTTTTTCCTGGGTCCTGCCTCAGAGGGAGAAATGTTACTAAGTACAATTATTGGTCTGTTTACTTCCTGCCTAAGTGGTATACCTTTAGGGAGTCCATTTATAGTTCTGCATCACCTTCATGGAACCGAGCTCTTAAGAGGTTCGTGTTTCTAAATGTGCAACTTTCATTTGTTTATAACAGTCCATACAAGCTCTTTCTTTAGTTGTTGGTCTCTCGTACAAAGGAAACGGGGGGGGGGGGCGTGAGGCTTTCTCAGGCGACGTTTTCTATTTACATTCTCGTCTCTTAGAAAGTCGACTCGAGGACAAAAATAAAGCGGTAATTTAGGTAATTGAATCCATAGAGGGTTATTAATACCTTGGTTATTTTCAAACCAAATCCAATGTTGAGCCATGGTTAGCGACTTGCAGTCCACGTGAGAGTCAATGCCAGAGATTTGTCAACTCTAGGAAACCGGCAAAAGGTCCTTCCTCGCAACCAAAACCATTTATAAGGTCCTCGTTTGCCACCTTTTACAAGGTCCTTTCTGACAAAAGTGTGTTTATAAAGGTCATATCTGAGAAATTTTCCTTAAGAAAAGGTATCTCGTATCTAACAAATTTGAAGGTACACGATCTTTCCCAATCCCTCCGGGATTCTCAAAAACTTAAATGTAGATGACGAGGTGGAAAGCAATTGTTTTGGGAATGATAACCATATCTGGAGTAACTGCTGTAGGTGTCACAGTTATCAGAGGCTCAGAGCTATGAGTTGTGTTTCCTTGCAAGTTTGTAATTTGCCAGGCAAATTCATTTTTTACCCGCTTGTTTTTTTTAAAAATGTCAACTTGAAGGGGTATGGATTTTAATTTGAAAGTATCAAGGGGTACCTGCAGTTAAAATGATTCTAAGAACCTTCTTTACTCAAAAACATTCAATAAAAAAGAAGCAAGGCATAGAGCATGTACTGGAGATGCATAAGTTAATCCTTAATCAACAGAGTTTTTATAAAAAGTTGGGAAACTGTGAAGTTAAGATGATTCTAAGAACCTTCTTTACTCAAAAACATTCAATAAAAAAGAAGCAAGGCATAGAGCATGTACTGGAGATGCATAAGTTAAATCCTTAATCAACAGAGTTTTTATAAAAACTTGGGAAACTGTGAAGTTAAGATAAGTTGTTTACAGCCTTGGTGATATCGAGAAAATTATTTCATTGTGCTTCTAATGGGTGACTTTTAGGCTCCATGCAAAATGATTTTTCATGGAAAACATTTTCCAAGGAAAAACACAATTCCAAACTAGTTTTTCTTTGTTTGGTTGCTTAAAAGAAAATGGGAGAAGATGGTGAATATTGAGGGGAAGAAGGGAGAGGGAGGTGAGGAGGAAAGGTGGAAAAGTGGTTACCCCCCTTTGAAATGGAAAAAGGTTTCTCCATCTTTGAAGGAGTTATGGAAAATTGTTTTTCATCCTTGTCAAACCAAACAACATAAAATGATTGAAAAAGGGAAAATCGTTTTCCATGAAAACGTTTTACACCCTACCAAACGGAGTCTTAGGGATGTTTTCAGCGTTGTGTTGATAAGAAGTAATGTTTAAAGGAGTCGTGTTGTCTTTTGATTGCTTCAGGTCCTTATAATATCCCTGCTATTCTGTTCTACATGTAGGAATTAGCTTAACAGCTGAGCAGTGGTCCTCCTTCAACAAGAACATTCCTGCTATAGAGAAAGCTATCGAGAAAATGGAGGATCGGTTGAACTGAGGCTGAAGCTTCTTTTAGGACAGGTATGACAGACTGCCTAAGAGATAATCCTCTTACAATTTGGTGTTTCAATGCTCGTATGTTGTGGTAGACATTGCTCACTGCAATATTTATCGTTTTGTTTCTCGAGTCATCCAGGTCTTCATTTTGCGAGACTTGATGCGTTGCCTTAGATAACTTTATGAAACAATGTACAAATCGTGTAGTGATTTTCATTTTGTGAGGCATCTTATAGTCCTCGGCAACTGTATATGCAATGCAGATAAATCATGTTCTTTGGCTGCTACTCCTTTCTAGAGTTTTCTATCGTATACTAAAAAATATTCCGTATTATCCTCTGCAATAAGAAATAATGTTTTCCCTACTCTTACAATCGTACTCTCCCTTCGACCCATGTCAAAGATGGGTTTGCCGTTTGCTCAATGTAAGTTTTTCTTTTTCCCGTAGAAAGAGATGGAACTTTTTCTCGAGATCGTTTATAGGCATCAGTCACCTGAGTCGGTGTTGTGGCTCAGGTTTATCATGAATCATGATTCATGATTCATGAATAGGCCTGGTTTCAATCTTTTACATAATTAGGCCTGGTTTCAATCAAATTATTCCTTTACTACACTAGGCATTAAGTTTATATCTTTACTAATGATTGTTTGAAAATGAATCCAAATTCGATAAATCCCGATTAGCATCCTCAACGACCCCACTAACCTCACATGAGGCCTGCCAAATCCAATTCATCGAGTTGATCACCACCAATTAGTCATAAACTTGTTTATACCAACTACATTGTCGCATGCCATGATACCAAGTACGGAGTACCTGGTATGGAGACAAGAGATGCCCA

mRNA sequence

ATTACCAAAACAATGCCATGAATATAAAAGAAATCACCTACGCATTCATTCGGTCCTTCCAAAAACGGAATATAACTTGCACTTTCACAGCTGCAGCCTGCACGAACGCCAGTTCATCAGACTTACAGAGAGTGGAAAATGGACGCGGCGACGAAGGAGAAGGTGGAAGAGACGGTGGTAGAAATCCTTCGTACCGCCGATATGCTAAAGATGACCGAGTTTAACGTCCGCACTCTCGCCGGCGAGAAGCTCGGTATAGACCTTTCTGAACCTTCTCGTAAGAAGTTTGTCCGGCAGATTGTTGAAGGTTTCCTTCAACAGCAGCAGCAAATCGATGCTCCTGAAGGCGGTAGCGGCGGCGGCGAAGTAGAAGAGGTACAACAAGAAGAAGAACAGGAAGAGGAGGAGGAAGAGAGTAATAAGAGACGTTCTGATGGCAAAGAGTATGACGAAGCCGGCGATCTTATCATCTGCCAATTGTCTGAAAAGCGAAGAGTGACGATTCAGGATTTCAAGGGGAAGACATTGGTGTCAATTAGGGAATACTATAAGAAGGATGGAAAATTTCTTCCTACCTCTAAAGGAATTAGCTTAACAGCTGAGCAGTGGTCCTCCTTCAACAAGAACATTCCTGCTATAGAGAAAGCTATCGAGAAAATGGAGGATCGGTTGAACTGAGGCTGAAGCTTCTTTTAGGACAGGTATGACAGACTGCCTAAGAGATAATCCTCTTACAATTTGGTGTTTCAATGCTCGTATGTTGTGGTAGACATTGCTCACTGCAATATTTATCGTTTTGTTTCTCGAGTCATCCAGGTCTTCATTTTGCGAGACTTGATGCGTTGCCTTAGATAACTTTATGAAACAATGTACAAATCGTGTAGTGATTTTCATTTTGTGAGGCATCTTATAGTCCTCGGCAACTGTATATGCAATGCAGATAAATCATGTTCTTTGGCTGCTACTCCTTTCTAGAGTTTTCTATCGTATACTAAAAAATATTCCGTATTATCCTCTGCAATAAGAAATAATGTTTTCCCTACTCTTACAATCGTACTCTCCCTTCGACCCATGTCAAAGATGGGTTTGCCGTTTGCTCAATGTAAGTTTTTCTTTTTCCCGTAGAAAGAGATGGAACTTTTTCTCGAGATCGTTTATAGGCATCAGTCACCTGAGTCGGTGTTGTGGCTCAGGTTTATCATGAATCATGATTCATGATTCATGAATAGGCCTGGTTTCAATCTTTTACATAATTAGGCCTGGTTTCAATCAAATTATTCCTTTACTACACTAGGCATTAAGTTTATATCTTTACTAATGATTGTTTGAAAATGAATCCAAATTCGATAAATCCCGATTAGCATCCTCAACGACCCCACTAACCTCACATGAGGCCTGCCAAATCCAATTCATCGAGTTGATCACCACCAATTAGTCATAAACTTGTTTATACCAACTACATTGTCGCATGCCATGATACCAAGTACGGAGTACCTGGTATGGAGACAAGAGATGCCCA

Coding sequence (CDS)

ATGGACGCGGCGACGAAGGAGAAGGTGGAAGAGACGGTGGTAGAAATCCTTCGTACCGCCGATATGCTAAAGATGACCGAGTTTAACGTCCGCACTCTCGCCGGCGAGAAGCTCGGTATAGACCTTTCTGAACCTTCTCGTAAGAAGTTTGTCCGGCAGATTGTTGAAGGTTTCCTTCAACAGCAGCAGCAAATCGATGCTCCTGAAGGCGGTAGCGGCGGCGGCGAAGTAGAAGAGGTACAACAAGAAGAAGAACAGGAAGAGGAGGAGGAAGAGAGTAATAAGAGACGTTCTGATGGCAAAGAGTATGACGAAGCCGGCGATCTTATCATCTGCCAATTGTCTGAAAAGCGAAGAGTGACGATTCAGGATTTCAAGGGGAAGACATTGGTGTCAATTAGGGAATACTATAAGAAGGATGGAAAATTTCTTCCTACCTCTAAAGGAATTAGCTTAACAGCTGAGCAGTGGTCCTCCTTCAACAAGAACATTCCTGCTATAGAGAAAGCTATCGAGAAAATGGAGGATCGGTTGAACTGA

Protein sequence

MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQQQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo21352Spo21352gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo21352.1Spo21352.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21352.1.utr5p.1Spo21352.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21352.1.CDS.3Spo21352.1.CDS.3CDS
Spo21352.1.CDS.2Spo21352.1.CDS.2CDS
Spo21352.1.CDS.1Spo21352.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21352.1.utr3p.1Spo21352.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21352.1.exon.3Spo21352.1.exon.3exon
Spo21352.1.exon.2Spo21352.1.exon.2exon
Spo21352.1.exon.1Spo21352.1.exon.1exon


Homology
[Close]
BLAST of Spo21352.1 vs. NCBI nr
Match: gi|902197397|gb|KNA13418.1| (hypothetical protein SOVF_117150 [Spinacia oleracea])

HSP 1 Score: 334.3 bits (856), Expect = 1.300e-88
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ
Sbjct: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
           QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV
Sbjct: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN 180
           TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN
Sbjct: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN 179
[Close]
BLAST of Spo21352.1 vs. NCBI nr
Match: gi|731330677|ref|XP_010676262.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 258.8 bits (660), Expect = 6.800e-66
Identity = 141/183 (77.05%), Postives = 160/183 (87.43%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MDAA K+KVEETV+EILR+ DM+KM+EF+VR LAGEKL IDLSEPSRKKFVRQ+VEGFLQ
Sbjct: 1   MDAAMKQKVEETVLEILRSVDMVKMSEFDVRKLAGEKLAIDLSEPSRKKFVRQVVEGFLQ 60

Query: 61  Q----QQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSE 120
           Q    QQQ DA EG +GGGEVEE       EEEEEESN RRSDGKEYD+ GDLIIC+LS+
Sbjct: 61  QRLQEQQQNDAVEGAAGGGEVEE-------EEEEEESNNRRSDGKEYDDDGDLIICRLSD 120

Query: 121 KRRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMED 180
           KRRVT+QDFKGKTLVSIREYY+KDGKF PTSKGISL+AEQWS+F K++PAIEKAI+KME 
Sbjct: 121 KRRVTVQDFKGKTLVSIREYYEKDGKFRPTSKGISLSAEQWSTFKKSLPAIEKAIDKMEA 176
[Close]
BLAST of Spo21352.1 vs. NCBI nr
Match: gi|747070911|ref|XP_011082301.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Sesamum indicum])

HSP 1 Score: 199.5 bits (506), Expect = 4.900e-48
Identity = 108/177 (61.02%), Postives = 139/177 (78.53%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MD  T+ K+EETV+EIL+ ++M + TE+ +R  A EKL +DLSEP+RKKFVRQ+VE +L+
Sbjct: 1   MDTETRNKIEETVLEILKNSNMDETTEYKIRKSASEKLEMDLSEPTRKKFVRQVVESYLR 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
           +QQ            + EE QQ EE  EEEEE N R++ G+EYD+ G LIIC+LS+KRRV
Sbjct: 61  EQQ-----------AKAEEEQQPEE--EEEEEDNGRKTGGREYDDEGGLIICRLSDKRRV 120

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDR 178
           T+ +F+GKTLVSIREYYK+DGK LP++KGISLTAEQW+SF KN+PAIEKAI+KME R
Sbjct: 121 TLSEFRGKTLVSIREYYKRDGKELPSAKGISLTAEQWTSFKKNVPAIEKAIKKMESR 164
[Close]
BLAST of Spo21352.1 vs. NCBI nr
Match: gi|698537167|ref|XP_009764744.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nicotiana sylvestris])

HSP 1 Score: 199.1 bits (505), Expect = 6.400e-48
Identity = 108/180 (60.00%), Postives = 139/180 (77.22%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MD+ T  K+EETV+EIL++ ++ ++TE  +R +A EKLG++LS+P RK FVRQ+VE FL 
Sbjct: 1   MDSETSNKIEETVLEILKSCNLDEVTELKIRKMASEKLGLELSDPIRKAFVRQVVEKFLA 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDG---KEYDEAGDLIICQLSEK 120
           ++Q               E  +EEE+EEEEEE +K++S G   KEYD+ GDLI+C+LS K
Sbjct: 61  EEQA------------KAEANEEEEEEEEEEEDDKKKSSGAGDKEYDDDGDLIVCRLSHK 120

Query: 121 RRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDR 178
           RRVTI +F+GKTLVSIREYY KDGK LPTSKGISLTAEQW++FNKNIPA+EKAI+KME R
Sbjct: 121 RRVTITEFRGKTLVSIREYYNKDGKELPTSKGISLTAEQWATFNKNIPAVEKAIKKMESR 168
[Close]
BLAST of Spo21352.1 vs. NCBI nr
Match: gi|720033838|ref|XP_010266551.1| (PREDICTED: RNA polymerase II transcriptional coactivator KELP [Nelumbo nucifera])

HSP 1 Score: 198.7 bits (504), Expect = 8.300e-48
Identity = 110/178 (61.80%), Postives = 138/178 (77.53%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MD  T+ K+EETV+EILR++DM  MTEF VR  A EKLGIDLS    K+FVR++VE FL 
Sbjct: 1   MDPETQHKIEETVLEILRSSDMDAMTEFKVRNSAAEKLGIDLSGTEYKRFVRRVVESFLV 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
            +++ +  +G +   E +E ++E EQEEEEEE  K R+  KEYD+ GDLIIC+LS KRRV
Sbjct: 61  SKEEEEQVKGTAPDEETKEAEEEGEQEEEEEE-RKSRNSAKEYDDDGDLIICKLSNKRRV 120

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRL 179
           TIQDF+GKTLVS+REYY+KDGK LP+SKGISLT EQW++F K +PAIE AI+ ME RL
Sbjct: 121 TIQDFRGKTLVSLREYYEKDGKQLPSSKGISLTTEQWTTFRKAVPAIEDAIKNMESRL 177
[Close]
BLAST of Spo21352.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R1M6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117150 PE=4 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 8.900e-89
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ
Sbjct: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
           QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV
Sbjct: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN 180
           TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN
Sbjct: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRLN 179
[Close]
BLAST of Spo21352.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098550 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.700e-66
Identity = 141/183 (77.05%), Postives = 160/183 (87.43%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MDAA K+KVEETV+EILR+ DM+KM+EF+VR LAGEKL IDLSEPSRKKFVRQ+VEGFLQ
Sbjct: 1   MDAAMKQKVEETVLEILRSVDMVKMSEFDVRKLAGEKLAIDLSEPSRKKFVRQVVEGFLQ 60

Query: 61  Q----QQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSE 120
           Q    QQQ DA EG +GGGEVEE       EEEEEESN RRSDGKEYD+ GDLIIC+LS+
Sbjct: 61  QRLQEQQQNDAVEGAAGGGEVEE-------EEEEEESNNRRSDGKEYDDDGDLIICRLSD 120

Query: 121 KRRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMED 180
           KRRVT+QDFKGKTLVSIREYY+KDGKF PTSKGISL+AEQWS+F K++PAIEKAI+KME 
Sbjct: 121 KRRVTVQDFKGKTLVSIREYYEKDGKFRPTSKGISLSAEQWSTFKKSLPAIEKAIDKMEA 176
[Close]
BLAST of Spo21352.1 vs. UniProtKB/TrEMBL
Match: A5B3J4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032101 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.200e-47
Identity = 110/186 (59.14%), Postives = 143/186 (76.88%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           M+  T+ ++E+TV+EIL++ADM +MTEF VR LA +KLGI+LS P  K+FVRQ+VE FLQ
Sbjct: 79  MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPDYKRFVRQVVETFLQ 138

Query: 61  QQQQIDA-------PEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDG-KEYDEAGDLIIC 120
             ++          P+      E  E +  EE+EEEE E ++ +S G KEYD+ GDLIIC
Sbjct: 139 STEEPGREPEPEPEPDRKKANTEAAEREPTEEEEEEEVEEDRGKSSGVKEYDDDGDLIIC 198

Query: 121 QLSEKRRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIE 179
           +LS++RRVTIQDF+GKTLVSIRE+Y+KDGK LP+SKGISLTAEQWS+F KN+PAIE+AI+
Sbjct: 199 RLSDRRRVTIQDFRGKTLVSIREFYRKDGKELPSSKGISLTAEQWSAFKKNVPAIEEAIQ 258
[Close]
BLAST of Spo21352.1 vs. UniProtKB/TrEMBL
Match: F6HU32_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01700 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 2.200e-47
Identity = 110/186 (59.14%), Postives = 143/186 (76.88%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           M+  T+ ++E+TV+EIL++ADM +MTEF VR LA +KLGI+LS P  K+FVRQ+VE FLQ
Sbjct: 1   MEPETRRRIEKTVLEILKSADMDEMTEFKVRKLASDKLGINLSAPDYKRFVRQVVETFLQ 60

Query: 61  QQQQIDA-------PEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDG-KEYDEAGDLIIC 120
             ++          P+      E  E +  EE+EEEE E ++ +S G KEYD+ GDLIIC
Sbjct: 61  STEEPGREPEPEPEPDRKKANTEAAEREPTEEEEEEEVEEDRGKSSGVKEYDDDGDLIIC 120

Query: 121 QLSEKRRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIE 179
           +LS++RRVTIQDF+GKTLVSIRE+Y+KDGK LP+SKGISLTAEQWS+F KN+PAIE+AI+
Sbjct: 121 RLSDRRRVTIQDFRGKTLVSIREFYRKDGKELPSSKGISLTAEQWSAFKKNVPAIEEAIQ 180
[Close]
BLAST of Spo21352.1 vs. UniProtKB/TrEMBL
Match: A0A068UVC3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00035584001 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.900e-47
Identity = 105/181 (58.01%), Postives = 143/181 (79.01%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           MD+ T++++EETV+EILR ++M + TE+ +R  A EKLG+DLS P RKKFVRQ+V  +L 
Sbjct: 1   MDSETEKRIEETVLEILRNSNMDEATEYMIRQSASEKLGLDLSYPPRKKFVRQVVNSYLT 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNK--RRSDGKEYDEAGDLIICQLSEKR 120
           +Q    A E      + EE ++EE+ +EE+E+S+K  R++  KEYD+ GDLIIC+LS+ R
Sbjct: 61  EQNAKAAAEHQQQQNDAEEEEEEEDDDEEDEDSDKKKRKAGDKEYDDEGDLIICRLSKSR 120

Query: 121 RVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRL 180
           RVT+ +F+G+TLVSIREYY K GK LPTSKGISLTAEQW+SF+KN+PAIEKAI+KM+ RL
Sbjct: 121 RVTLTEFRGRTLVSIREYYSKGGKDLPTSKGISLTAEQWASFSKNVPAIEKAIKKMKSRL 180
[Close]
BLAST of Spo21352.1 vs. ExPASy Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.300e-45
Identity = 104/178 (58.43%), Postives = 132/178 (74.16%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           M+  TKEK+E+TV+EIL  +DM ++TEF VR LA EKL IDLSE S K FVR +VE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
           +++            E E  Q  +E+E+ +++  K     KE+D+ GDLIIC+LS+KRRV
Sbjct: 61  EER----------AREYENSQVNKEEEDGDKDCGK---GNKEFDDDGDLIICRLSDKRRV 120

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRL 179
           TIQ+FKGK+LVSIREYYKKDGK LPTSKGISLT EQWS+F KN+PAIE A++KME R+
Sbjct: 121 TIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
[Close]
BLAST of Spo21352.1 vs. ExPASy Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.600e-11
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 1 

		  

Query: 78  EEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRVTIQDFKGKTLVSIREYY 137
           E+V+  +++ E    + K      + D++ D+++C +S+ RRV+++++ GK  + IRE+Y
Sbjct: 10  EDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFY 69

Query: 138 KKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKM 175
            KDGK LP  KGISL+ +QW++   +   IEKA+  +
Sbjct: 70  VKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106
[Close]
BLAST of Spo21352.1 vs. ExPASy Swiss-Prot
Match: TCP4_SCHPO (Putative RNA polymerase II transcriptional coactivator OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16A10.02 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.500e-7
Identity = 23/57 (40.35%), Postives = 37/57 (64.91%), Query Frame = 1 

		  

Query: 115 SEKRRVTIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAI 172
           +EK+R+T+ +F+G   V IREYY+KDG  LP  KGI+L   +W    + I  ++ ++
Sbjct: 35  TEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKKGIALNINEWKKLKQLIHEVDDSL 91
[Close]
BLAST of Spo21352.1 vs. ExPASy Swiss-Prot
Match: TCP4_CHICK (Activated RNA polymerase II transcriptional coactivator p15 OS=Gallus gallus GN=SUB1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.600e-6
Identity = 31/90 (34.44%), Postives = 55/90 (61.11%), Query Frame = 1 

		  

Query: 86  QEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRVTIQDFKGKTLVSIREYY-KKDGKFL 145
           ++++  ES+K  +  K+     + +  Q+ + R V+++DFKGK L+ IREY+  ++G+  
Sbjct: 38  KKQKTGESSKGAASSKQSSNRDENMF-QIGKMRYVSVRDFKGKVLIDIREYWMDQEGEMK 97

Query: 146 PTSKGISLTAEQWSSFNKNIPAIEKAIEKM 175
           P  KGISL  EQW+   + I  I+ A+ K+
Sbjct: 98  PGRKGISLNPEQWNQLKEQISDIDDAVRKL 126
[Close]
BLAST of Spo21352.1 vs. ExPASy Swiss-Prot
Match: TCP4_RAT (Activated RNA polymerase II transcriptional coactivator p15 OS=Rattus norvegicus GN=Sub1 PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 2.700e-6
Identity = 38/114 (33.33%), Postives = 62/114 (54.39%), Query Frame = 1 

		  

Query: 70  GGSGGGEVEEVQQEEEQEEEEE--------ESNKRRSDGKEYDEAGDLIICQLSEKRRVT 129
           G     EVE+  + ++Q   E+        ES++  +  K+   + D  + Q+ + R V+
Sbjct: 14  GSDSDSEVEKKLKRKKQVVPEKPVKKQKPGESSRALASSKQSSSSRDDNMFQIGKMRYVS 73

Query: 130 IQDFKGKTLVSIREYY-KKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKM 175
           ++DFKGK L+ IREY+   +G+  P  KGISL  EQWS   + I  I+ A+ K+
Sbjct: 74  VRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL 127
[Close]
BLAST of Spo21352.1 vs. TAIR (Arabidopsis)
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 183.3 bits (464), Expect = 1.300e-46
Identity = 104/178 (58.43%), Postives = 132/178 (74.16%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           M+  TKEK+E+TV+EIL  +DM ++TEF VR LA EKL IDLSE S K FVR +VE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
           +++            E E  Q  +E+E+ +++  K     KE+D+ GDLIIC+LS+KRRV
Sbjct: 61  EER----------AREYENSQVNKEEEDGDKDCGK---GNKEFDDDGDLIICRLSDKRRV 120

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRL 179
           TIQ+FKGK+LVSIREYYKKDGK LPTSKGISLT EQWS+F KN+PAIE A++KME R+
Sbjct: 121 TIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
[Close]
BLAST of Spo21352.1 vs. TAIR (Arabidopsis)
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.900e-13
Identity = 64/178 (35.96%), Postives = 91/178 (51.12%), Query Frame = 1 

		  

Query: 1   MDAATKEKVEETVVEILRTADMLKMTEFNVRTLAGEKLGIDLSEPSRKKFVRQIVEGFLQ 60
           M+    +K+EETV  IL  +DM +MTEF +R  A  KLGIDLS  + KK VR ++E FL 
Sbjct: 12  MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71

Query: 61  QQQQIDAPEGGSGGGEVEEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRV 120
                      S  GE   V +     + E  S    S G E     +  IC+LSEK+  
Sbjct: 72  -----------STPGEA-LVPETVAPAKNETVSVAAASVGGE----DERFICKLSEKQNA 131

Query: 121 TIQDFKGKTLVSIREYYKKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKMEDRL 179
           T+Q ++G+  +SI    ++ GK     +G  L+  QWS   KN  AIE  I++ + +L
Sbjct: 132 TVQRYRGQPFLSIGS--QEHGK---AFRGAHLSTNQWSVIKKNFAAIEDGIKQCQSKL 168
[Close]
BLAST of Spo21352.1 vs. TAIR (Arabidopsis)
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 70.9 bits (172), Expect = 9.300e-13
Identity = 34/97 (35.05%), Postives = 62/97 (63.92%), Query Frame = 1 

		  

Query: 78  EEVQQEEEQEEEEEESNKRRSDGKEYDEAGDLIICQLSEKRRVTIQDFKGKTLVSIREYY 137
           E+V+  +++ E    + K      + D++ D+++C +S+ RRV+++++ GK  + IRE+Y
Sbjct: 10  EDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFY 69

Query: 138 KKDGKFLPTSKGISLTAEQWSSFNKNIPAIEKAIEKM 175
            KDGK LP  KGISL+ +QW++   +   IEKA+  +
Sbjct: 70  VKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106
The following BLAST results are available for this feature:
BLAST of Spo21352.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902197397|gb|KNA13418.1|1.3e-88100.hypothetical protein SOVF_1171... [more]
gi|731330677|ref|XP_010676262.1|6.8e-6677.0PREDICTED: RNA polymerase II t... [more]
gi|747070911|ref|XP_011082301.1|4.9e-4861.0PREDICTED: RNA polymerase II t... [more]
gi|698537167|ref|XP_009764744.1|6.4e-4860.0PREDICTED: RNA polymerase II t... [more]
gi|720033838|ref|XP_010266551.1|8.3e-4861.8PREDICTED: RNA polymerase II t... [more]
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BLAST of Spo21352.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R1M6_SPIOL8.9e-89100.Uncharacterized protein OS=Spi... [more]
A0A0J8CEC9_BETVU4.7e-6677.0Uncharacterized protein OS=Bet... [more]
A5B3J4_VITVI2.2e-4759.1Putative uncharacterized prote... [more]
F6HU32_VITVI2.2e-4759.1Putative uncharacterized prote... [more]
A0A068UVC3_COFCA4.9e-4758.0Uncharacterized protein OS=Cof... [more]
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BLAST of Spo21352.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KELP_ARATH2.3e-4558.4RNA polymerase II transcriptio... [more]
KIWI_ARATH1.6e-1135.0RNA polymerase II transcriptio... [more]
TCP4_SCHPO2.5e-740.3Putative RNA polymerase II tra... [more]
TCP4_CHICK1.6e-634.4Activated RNA polymerase II tr... [more]
TCP4_RAT2.7e-633.3Activated RNA polymerase II tr... [more]
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BLAST of Spo21352.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT4G10920.11.3e-4658.4transcriptional coactivator p1... [more]
AT4G00980.11.9e-1335.9zinc knuckle (CCHC-type) famil... [more]
AT5G09250.19.3e-1335.0ssDNA-binding transcriptional ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003173Transcriptional coactivator p15 (PC4)PFAMPF02229PC4coord: 112..162
score: 7.9
IPR009044ssDNA-binding transcriptional regulatorGENE3D2.30.31.10coord: 111..173
score: 2.1
IPR009044ssDNA-binding transcriptional regulatorunknownSSF54447ssDNA-binding transcriptional regulator domaincoord: 111..173
score: 4.16
IPR009057Homeodomain-likeGENE3D1.10.10.60coord: 4..62
score: 1.2
IPR014876DEK, C-terminalPFAMPF08766DEK_Ccoord: 5..59
score: 4.2
IPR017415RNA polymerase II transcriptional coactivator KELPPIRPIRSF038156RNA_polymII_KELPcoord: 1..178
score: 4.9
NoneNo IPR availableunknownCoilCoilcoord: 77..97
scor
NoneNo IPR availablePANTHERPTHR13215RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATORcoord: 1..179
score: 4.4
NoneNo IPR availablePANTHERPTHR13215:SF6RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELPcoord: 1..179
score: 4.4
NoneNo IPR availableunknownSSF109715DEK C-terminal domaincoord: 4..60
score: 3.2

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045893 positive regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0005515 protein binding