Spo21353.1 (mRNA) | SpinachBase

Overview


Name	Spo21353.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ycf20-like protein
Location	chr6 : 39589397 .. 39594661 (-)
Sequence length	717

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCAAAAAGAGGCCTACGTCGACGCCGTTGCCTCCACCATTATCGCCGGCGACCAAGGTTTTTTTTTTTCATTTTTTCGTTCTATCTCGCGCACACGAATTGCGGGGCCTCCATTAACGCCGCGCAAAGGTTGTGCACCGGTGACATGTGGGCCGTGCATATCTGGTGCACCACTCCCATGTCACTGGCGCACGGTGTTTGCGTGGCGGGCATGGATTCCCCGCATTTCGTGTACGCAGGAAGTTTCAATTTTTTTTTTAATATTTTTTTTAATTATTGTTGTGTTAATTCAATTTCTGATTATGTTATTAAATTTGTTGTTGAATTTATTATTTCCTATTTTATTTGTTTTATTTTTATTTTTTAATTTTCTGTTTTCATTTTGATTGTTCAATGTAGTTATTTTAGTTGATTATAATTTATTATATTAACGGAAAATTAAATATAATCCGCAGCGAAAAAAATTATACTCCCTCCGTCCCAGATTAGTTGTTACACTTTCCTTTTTTGGCCGTCCCAGATTAGTTGTTACACTTCTAAATTAGGAATGACCCCACTATTATTATATTGTCTCTCTCTTCCCACTAAATATTTTTTTTGTCCCCACACTCTCTCTTATTCAATTAAAATAATACCCCACTAACTCCTATCACATCTACTTTTTCAATAAAATAACAATTGATAACCAAACAACCACTTATCACCTAAAACTTTGTGCAAAGGTAAGTGTAACAACTAATCTGGGACGGAGGGAGTAAATTTTAGGGATCATTATTGTGGTAATTATATGAGTTTGGAAGATTGCCAACAAAAAATATTAAAAAAAAAAAATTGGCCGGATTTTTTTTTCCGGCGAGGATCTTAGGCCTGCCGGATTTTTTTTTCCGGTGGAGATCTTAGGACTGCCGACGGAGGGGGGAGGGGGGATGAGGGCCTGAGGGGAAGGGGTGAAAAAAATATGATGGGAGGGGGTAAGTTTATTATAAGGGCAAGTTTGTACTTTCACTTCAATAATGCGGACGATATTTACGTACACGGGCGTCGAATAACGATACACTTTGGTTGACCTACCCCACGTGATCAATGATTTTAAGGGTGATAGGTTTCCTTTGTGACTATTATAAAAGATACCTATCCGAATTTAATACTCCGTATTTCATTATTCATCATTTCTCATTTGGACACTATTTATCAATTAACTTTGACAATCTTTTTTCATCATTATGTATGTAAAAATATAATCAAGTGAGATTTTGTTAAATTCGTATCAATACGACGATTTCAAATATCAACTTTTTATAATTTTTACTTATACGTATTTAGAGATATTAATATCCAAAAAAGCGTGTTGGAATACGTACAAAAAGAAATGTTACATGTATTGTGGAATGGAGGTAGTACGAAGTACTTTTATACGGAATATATGTCATGTCGTGTAGATATAATAGTGTAAGGATATCTATCTATATTATTAAAGCAGAGTAATAGAGAATGAGAGGGCTCCAAAATCCCAATCCTTCCTTTTGAGCCACTCTACTTAAAAAGGGCAAATTAATCAATTAAAAGAAAAAATAAATTAACATATATTTATAATAGGAAACTTAAATAACAAAAGATATTGATTGACAACTTTTCAAATCTGTTAACACATTCTAAAAATTTATTTCATCAATATATTAAATTTAAGAAACATTACCAAATAATTTGATTATGTAAAATTTATAACTAATGTTGTTTTGTTTATGACGAACAACTAATTTTCATTGTCCAATTAATTTCATAAATTTAAGAGAAAGTCAGTCAAAGTTTTTTTCCAATGGTTCTCCAAGACTTTTCTGTTAAACTGCCTGAGCATATAAGTACCAGGTATTTTTCTTCATGGATGATGTATGGACCTTCCCATGTTGCAGAAAGTTTTCCATGATTTCGGTCTTTCTGAACCGATGCAGAGTTTCTGAGCACTAGATCCCTGACCTTCATATGTCTGACATTAACTGTTCGGATGTAGTGTTGCATTGATGTTCTGACGTTCTCTGTTGATAGGTTGCATTAAGTGTTCTGGCATCGTTCCGAGCTTTATTCAGCAGATCTAAAGATTCGGTCAGAAGTTGGTCATTGCTTTCACCATGGATTCCATCATACTTGTTGTATGCTTGGATCCTTAAGCTTTCTGTGCCAATCTCTACGGGGATGACTACCTCGGAACCATACACCAAATGAAAAGTTGTCTGCTCCAGTAGCTTCTTTTTCGGTGGTTCGAAGAGACCGTTATGCAAATTAAAGACTTTCTCGAGATTTTTGGTCATCCGTTTGATATTTTAAAAATAGGAGAATCGCAATTTCAAATTGAATAGAAATAGTTCAAATTGATTGTATCTATATGCATCAGGATCCCGATTCATGAATCTCTCAGTTCTAGAAAGAAAATAAGAGGATCGAACCATTTCTTCTGACGCCTTTTCAAATTCGAGAAATCTTGGTTGATCATATATTTCCTTATAGTTCTATGATTCAAATAGATTTTGAAAAAAAAGGCAAAATCGGAAATGGTTAAACTTAAATTTACGGAAGTAGTTGAATCCGAAAATGATTTAGCTCTTCATGAATCGGAAATGGTTAAACTTAAATTTACATGCTATTTTGAAATATGCTTATTTTACTCATTCATTTATTTTAAACTTTACTTATTTTTTATTATCTCTTACAATATTTCTTCTATAATATATATACATTTTTCTCTTATCTTACTTTCATTAATTCCACTTTCTCTTCATTGTTTTTCTTATTACTTCTTGCTCCTTTTTGGTTTGATTGGTGATAATGACGATCTCCTACGACGATTCATGTTAGCCGATCCCAAATCATTTTGGGACTAAGGCTTTGTTGTTGTTGTAGTAGTTGAATCCCATTTGAATTCATACAAATAAATAGAGTACTATAAGAGCTATTCTGATTTCATCGAAGCGGAAGAATCAAATAATTTTCTATCAGATCCGATTTTTTTTTTGAGTGAATTATGATGTAATGGCGAAAGAAAAGAGAATCTAATAAGGAAAATTATCTACTCCATCCGATTGGTTCTGGGTTCGAATCCTGAGAACCCATTTTTTAATACTGAAATCATATTATTCATAGGAGATTGCTTAGGAATTTCTCATAATACCCAACCCGGTTGATTCGCAGTCGGGAAGTGTCAATGGTTCAGGTATAAAACCAGTCATGCTTCTCTCTCCTTCCTCATTTTCCCAGGCAAGTTCTTCCATTTATTCATTCTACTTTTTCAAATTAATTCCCCAATCCTTCAATTTTTGTCAATTGGGTGTCACTTTGCTTGTAATTCTAGGGTTTTGAAAGCTCAAACTTCTGAATTTTGATTAAGATTTGCAATTATTAGGGTGTTTGATTGAAATTCATTTGTTGCATTCATAACTTCAAAATTTCTTGTCCAATTTAATCTGTGTAATTGGTTTAGGGTTTATAGATTAGCATGAATCTGTGTTCGTTGAAGATTAAGTGTTTTGATGAAATTAGCCCTCGGATTTTGCAAAATTCTGAGATGGGAACAATGATTTTGCAGGCAATGCCGCATTTCTTGTATACAGAAATGCAGTTGAAGCAATGTCGTGTTTCGGAGATTTTTCATACCCAAGAGAACAAGTTATTGATCAGGCAGGGTTTGACAAACATTGCTCCAAAATCACTGTCTTTCTCCAAGAGGAGGTGTGTAGAGCTTCAAACTAGTCGTTTAAATGATAGTTTTCCCAATTGCAATACAGTGATGTGTTGTTGTCTGAGGTCTTTTGCATTTCACAATTGATATCAGTGTGGTGCTTCTAACTTGTTAGAGTTGCTACTGTTTGAGGAAACACTACTAAAGAGAATTGTGTCATTTCCTGAGAGTGATTCTATCATCCTTTTTACTTAAAACTTGGTGATTTGAGTGCATCGAGTCTTGTTAGTTTGATTATTTAGCTTGTTGATCCTAAGAGAGAAACCTTGGCTAATGGCTATTAGAACTGTTTGCTGCTCTCAAAGGTATGAGATAATGAAGGGAAGTTTACTAGATGAGGGTGTTTGACTGTTGGTAATATATCTTCAGTGTTAACTTATCTACATGAAAGTTTTTATACTCCGTATTTGTGTTAGTCTTCCTGTATGAAGAACGAACAACAGACACTCTTGTTTTTTCAGCAGTTACCTTAGTTTATTTATATTCCATGATATTAAGGGTGTTGTGTTTAATGTGTCATCTATCTTCGTTTTGTGGTTCTAATCAGTTACCTTAGTCAGTATGTTTTTGGTAACCTAGCTGTAAACTTTGCTTGATGACATTTGGTTGGTTTTTTTTTTAACTTATTAGTCTTTGTAAGAGAGGATTGGGGTAATTGAAGTATATTTAAGTATCACATTGGGCAAACATATCTCTTGGACAAAACACTGGTGGTACAGTTTCTTCAAAATTTGAAAACATGGTCTTATGATTGCTGTACTCCCCTATCCGTCCAAGGCAAAAGTTATCCAATCCAAGTTCATGCTTTAGTTCCCTTTTTGTGATGGTGCAGTATTATGTTAAATTTGTTACTACACATTAGTCAGCACCGTCTAATCTGCAAAGCGACGGATAATTCAGCCAAGTTCTTGCAATCCTATCAAGTTTCCCAATTTGGTTCCTATCAAGATCCCGGTGTGACCTTCACCTAATTTTTGGTGTTATTCCCACATCTTCAAACCAAAAAAAATAATTTGACGTTCATGTATGCATTTGGTGACTAACTCAAGCCATCTCTAACCCCCACGTTGATGTGCTTGAGCAGTTTTCACAGGGGAAGACACTGTTGGAAACTCAAATTTGCTTTAGATACTGGTGGATTATCCGGTAATGGCAATCAGCAAAATGATATTAACGAGGACTCCTCGGGTCTTGGGCAAACACGGCTTAGCAGGATTGTGATTGCAGGTGGCAGGCAGCTGCTAGCAAAGTTGAATTCTGCTAGAAAGAATTTCCCGATGAAAGTTTTTCTTCTGTTGCTGGGATTCTACACTGCTAACGCACTAGCAACAGTACTTGGTCAGACGGGTGATTGGGATGTATTGGTTGCAGGTATTGTAGTAGCTGCCATCGAGGGTATTGGTATGCTCATGTACAAAAGAAGTACATTACCAAGTGGGAGGCTACAATCTTTAGTTGTGCTCATCAACTATTGGAAAGCCGGTGTTTGCTTAGGCCTTTTTGTAGATGCTTTCAAATTGGGAAGCTGA

mRNA sequence

ATGGCTCCCAAAAAGAGGCCTACGTCGACGCCGTTGCCTCCACCATTATCGCCGGCGACCAAGTCGGGAAGTGTCAATGGTTCAGGTATAAAACCAGTCATGCTTCTCTCTCCTTCCTCATTTTCCCAGGCAATGCCGCATTTCTTGTATACAGAAATGCAGTTGAAGCAATGTCGTGTTTCGGAGATTTTTCATACCCAAGAGAACAAGTTATTGATCAGGCAGGGTTTGACAAACATTGCTCCAAAATCACTGTCTTTCTCCAAGAGGAGTTTTCACAGGGGAAGACACTGTTGGAAACTCAAATTTGCTTTAGATACTGGTGGATTATCCGGTAATGGCAATCAGCAAAATGATATTAACGAGGACTCCTCGGGTCTTGGGCAAACACGGCTTAGCAGGATTGTGATTGCAGGTGGCAGGCAGCTGCTAGCAAAGTTGAATTCTGCTAGAAAGAATTTCCCGATGAAAGTTTTTCTTCTGTTGCTGGGATTCTACACTGCTAACGCACTAGCAACAGTACTTGGTCAGACGGGTGATTGGGATGTATTGGTTGCAGGTATTGTAGTAGCTGCCATCGAGGGTATTGGTATGCTCATGTACAAAAGAAGTACATTACCAAGTGGGAGGCTACAATCTTTAGTTGTGCTCATCAACTATTGGAAAGCCGGTGTTTGCTTAGGCCTTTTTGTAGATGCTTTCAAATTGGGAAGCTGA

Coding sequence (CDS)

ATGGCTCCCAAAAAGAGGCCTACGTCGACGCCGTTGCCTCCACCATTATCGCCGGCGACCAAGTCGGGAAGTGTCAATGGTTCAGGTATAAAACCAGTCATGCTTCTCTCTCCTTCCTCATTTTCCCAGGCAATGCCGCATTTCTTGTATACAGAAATGCAGTTGAAGCAATGTCGTGTTTCGGAGATTTTTCATACCCAAGAGAACAAGTTATTGATCAGGCAGGGTTTGACAAACATTGCTCCAAAATCACTGTCTTTCTCCAAGAGGAGTTTTCACAGGGGAAGACACTGTTGGAAACTCAAATTTGCTTTAGATACTGGTGGATTATCCGGTAATGGCAATCAGCAAAATGATATTAACGAGGACTCCTCGGGTCTTGGGCAAACACGGCTTAGCAGGATTGTGATTGCAGGTGGCAGGCAGCTGCTAGCAAAGTTGAATTCTGCTAGAAAGAATTTCCCGATGAAAGTTTTTCTTCTGTTGCTGGGATTCTACACTGCTAACGCACTAGCAACAGTACTTGGTCAGACGGGTGATTGGGATGTATTGGTTGCAGGTATTGTAGTAGCTGCCATCGAGGGTATTGGTATGCTCATGTACAAAAGAAGTACATTACCAAGTGGGAGGCTACAATCTTTAGTTGTGCTCATCAACTATTGGAAAGCCGGTGTTTGCTTAGGCCTTTTTGTAGATGCTTTCAAATTGGGAAGCTGA

Protein sequence

MAPKKRPTSTPLPPPLSPATKSGSVNGSGIKPVMLLSPSSFSQAMPHFLYTEMQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21353	Spo21353	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21353.1	Spo21353.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21353.1.CDS.4	Spo21353.1.CDS.4	CDS
Spo21353.1.CDS.3	Spo21353.1.CDS.3	CDS
Spo21353.1.CDS.2	Spo21353.1.CDS.2	CDS
Spo21353.1.CDS.1	Spo21353.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21353.1.exon.4	Spo21353.1.exon.4	exon
Spo21353.1.exon.3	Spo21353.1.exon.3	exon
Spo21353.1.exon.2	Spo21353.1.exon.2	exon
Spo21353.1.exon.1	Spo21353.1.exon.1	exon

Homology

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BLAST of Spo21353.1 vs. NCBI nr
Match: gi|902190255|gb|KNA11578.1| (hypothetical protein SOVF_133910 [Spinacia oleracea])

HSP 1 Score: 364.4 bits (934), Expect = 1.500e-97
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 1


		  
Query: 53  MQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSG 112
           MQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFS RSFHRGRHCWKLKFALDTGGLSG
Sbjct: 1   MQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSNRSFHRGRHCWKLKFALDTGGLSG 60

Query: 113 NGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALA 172
           NGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALA
Sbjct: 61  NGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALA 120

Query: 173 TVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVD 232
           TVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVD
Sbjct: 121 TVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVD 180

Query: 233 AFKLGS 239
           AFKLGS
Sbjct: 181 AFKLGS 186

[Close]

BLAST of Spo21353.1 vs. NCBI nr
Match: gi|731330679|ref|XP_010676263.1| (PREDICTED: ycf20-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 320.5 bits (820), Expect = 2.500e-84
Identity = 163/205 (79.51%), Postives = 173/205 (84.39%), Query Frame = 1


		  
Query: 34  MLLSPSSFSQAMPHFLYTEMQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSKRSFH 93
           M+LSP S SQ MPH    ++ LKQ   S IF  +ENKLL R+ LTN  PKS SFSK SF 
Sbjct: 1   MILSPPSLSQVMPHIFNKDLYLKQHCASAIFSNEENKLLFRKALTNSTPKSPSFSKGSFQ 60

Query: 94  RGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKN 153
            GRHCWK+K ALDTGG   NG Q+ND+NEDS GLGQTRLSRIVIAGGRQLL KLNSARKN
Sbjct: 61  NGRHCWKIKLALDTGGFPSNGGQENDVNEDSPGLGQTRLSRIVIAGGRQLLGKLNSARKN 120

Query: 154 FPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQS 213
           FPMKVFLLLLGFYTANALAT+LGQTGDWDVLVAGIVVAAIEGIGMLMYK+S L SGRLQS
Sbjct: 121 FPMKVFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKSALSSGRLQS 180

Query: 214 LVVLINYWKAGVCLGLFVDAFKLGS 239
           LVV INYWKAGVCLGLFVDAFKLGS
Sbjct: 181 LVVFINYWKAGVCLGLFVDAFKLGS 205

[Close]

BLAST of Spo21353.1 vs. NCBI nr
Match: gi|870860580|gb|KMT11888.1| (hypothetical protein BVRB_5g098560 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 308.1 bits (788), Expect = 1.300e-80
Identity = 156/194 (80.41%), Postives = 165/194 (85.05%), Query Frame = 1


		  
Query: 45  MPHFLYTEMQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSKRSFHRGRHCWKLKFA 104
           MPH    ++ LKQ   S IF  +ENKLL R+ LTN  PKS SFSK SF  GRHCWK+K A
Sbjct: 1   MPHIFNKDLYLKQHCASAIFSNEENKLLFRKALTNSTPKSPSFSKGSFQNGRHCWKIKLA 60

Query: 105 LDTGGLSGNGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLG 164
           LDTGG   NG Q+ND+NEDS GLGQTRLSRIVIAGGRQLL KLNSARKNFPMKVFLLLLG
Sbjct: 61  LDTGGFPSNGGQENDVNEDSPGLGQTRLSRIVIAGGRQLLGKLNSARKNFPMKVFLLLLG 120

Query: 165 FYTANALATVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAG 224
           FYTANALAT+LGQTGDWDVLVAGIVVAAIEGIGMLMYK+S L SGRLQSLVV INYWKAG
Sbjct: 121 FYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKSALSSGRLQSLVVFINYWKAG 180

Query: 225 VCLGLFVDAFKLGS 239
           VCLGLFVDAFKLGS
Sbjct: 181 VCLGLFVDAFKLGS 194

[Close]

BLAST of Spo21353.1 vs. NCBI nr
Match: gi|223545849|gb|EEF47352.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 237.3 bits (604), Expect = 2.800e-59
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = 1


		  
Query: 77  LTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIV 136
           +  I  KS SF ++ F      W++ FALDTGG+SGNG ++N ++ DSSGLG TRL RIV
Sbjct: 40  IPKIGLKSASFLRKRFKLSGQDWRIPFALDTGGISGNGGEEN-LDGDSSGLGSTRLGRIV 99

Query: 137 IAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGI 196
            AGGRQLL KLNSARKNFPMK+FLLLLGFYTANALAT+LGQTGDWDVLVAG+VVAAIEGI
Sbjct: 100 SAGGRQLLQKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGI 159

Query: 197 GMLMYKRSTLPS-GRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           GMLMYK+ T PS GRLQS VV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 160 GMLMYKKPTSPSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 201

[Close]

BLAST of Spo21353.1 vs. NCBI nr
Match: gi|1000975699|ref|XP_002514798.2| (PREDICTED: ycf20-like protein [Ricinus communis])

HSP 1 Score: 237.3 bits (604), Expect = 2.800e-59
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = 1


		  
Query: 77  LTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIV 136
           +  I  KS SF ++ F      W++ FALDTGG+SGNG ++N ++ DSSGLG TRL RIV
Sbjct: 48  IPKIGLKSASFLRKRFKLSGQDWRIPFALDTGGISGNGGEEN-LDGDSSGLGSTRLGRIV 107

Query: 137 IAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGI 196
            AGGRQLL KLNSARKNFPMK+FLLLLGFYTANALAT+LGQTGDWDVLVAG+VVAAIEGI
Sbjct: 108 SAGGRQLLQKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGI 167

Query: 197 GMLMYKRSTLPS-GRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           GMLMYK+ T PS GRLQS VV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 168 GMLMYKKPTSPSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 209

[Close]

BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXY2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133910 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.100e-97
Identity = 185/186 (99.46%), Postives = 185/186 (99.46%), Query Frame = 1


		  
Query: 53  MQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSG 112
           MQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFS RSFHRGRHCWKLKFALDTGGLSG
Sbjct: 1   MQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSNRSFHRGRHCWKLKFALDTGGLSG 60

Query: 113 NGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALA 172
           NGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALA
Sbjct: 61  NGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALA 120

Query: 173 TVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVD 232
           TVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVD
Sbjct: 121 TVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVD 180

Query: 233 AFKLGS 239
           AFKLGS
Sbjct: 181 AFKLGS 186

[Close]

BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CII4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098560 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 9.100e-81
Identity = 156/194 (80.41%), Postives = 165/194 (85.05%), Query Frame = 1


		  
Query: 45  MPHFLYTEMQLKQCRVSEIFHTQENKLLIRQGLTNIAPKSLSFSKRSFHRGRHCWKLKFA 104
           MPH    ++ LKQ   S IF  +ENKLL R+ LTN  PKS SFSK SF  GRHCWK+K A
Sbjct: 1   MPHIFNKDLYLKQHCASAIFSNEENKLLFRKALTNSTPKSPSFSKGSFQNGRHCWKIKLA 60

Query: 105 LDTGGLSGNGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLG 164
           LDTGG   NG Q+ND+NEDS GLGQTRLSRIVIAGGRQLL KLNSARKNFPMKVFLLLLG
Sbjct: 61  LDTGGFPSNGGQENDVNEDSPGLGQTRLSRIVIAGGRQLLGKLNSARKNFPMKVFLLLLG 120

Query: 165 FYTANALATVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAG 224
           FYTANALAT+LGQTGDWDVLVAGIVVAAIEGIGMLMYK+S L SGRLQSLVV INYWKAG
Sbjct: 121 FYTANALATILGQTGDWDVLVAGIVVAAIEGIGMLMYKKSALSSGRLQSLVVFINYWKAG 180

Query: 225 VCLGLFVDAFKLGS 239
           VCLGLFVDAFKLGS
Sbjct: 181 VCLGLFVDAFKLGS 194

[Close]

BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
Match: B9RM29_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077390 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.000e-59
Identity = 122/163 (74.85%), Postives = 138/163 (84.66%), Query Frame = 1


		  
Query: 77  LTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIV 136
           +  I  KS SF ++ F      W++ FALDTGG+SGNG ++N ++ DSSGLG TRL RIV
Sbjct: 40  IPKIGLKSASFLRKRFKLSGQDWRIPFALDTGGISGNGGEEN-LDGDSSGLGSTRLGRIV 99

Query: 137 IAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGI 196
            AGGRQLL KLNSARKNFPMK+FLLLLGFYTANALAT+LGQTGDWDVLVAG+VVAAIEGI
Sbjct: 100 SAGGRQLLQKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGI 159

Query: 197 GMLMYKRSTLPS-GRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           GMLMYK+ T PS GRLQS VV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 160 GMLMYKKPTSPSTGRLQSFVVMMNYWKAGVCLGLFVDAFKLGS 201

[Close]

BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
Match: D7U6I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00110 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.600e-59
Identity = 123/163 (75.46%), Postives = 138/163 (84.66%), Query Frame = 1


		  
Query: 77  LTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIV 136
           ++ +  KS  F ++SF   RH WK  FALDTGG+  NG Q+N +N +   LGQTRL RIV
Sbjct: 64  ISKLGMKSAPFPRKSFQTRRHGWKTAFALDTGGIPDNGGQEN-LNGNGPDLGQTRLGRIV 123

Query: 137 IAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGI 196
            AGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALAT+LGQTGDWDVLVAG+VVAAIEGI
Sbjct: 124 SAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATILGQTGDWDVLVAGVVVAAIEGI 183

Query: 197 GMLMYKRSTLPS-GRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           GML+YK+S+  S GRLQSLVV+INYWKAGVCLGLFVDAFKLGS
Sbjct: 184 GMLVYKKSSSQSTGRLQSLVVMINYWKAGVCLGLFVDAFKLGS 225

[Close]

BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QHN5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G088400 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.200e-58
Identity = 123/171 (71.93%), Postives = 144/171 (84.21%), Query Frame = 1


		  
Query: 69  NKLLIRQGLTNIAPKSLSFSKRSFHRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLG 128
           N+L +    + I  KSL+F K+S  + RH WK+  ALDTGG+ GNG  ++ +N DSS LG
Sbjct: 43  NELSLSGQSSKIGLKSLTFPKKSSTQ-RHGWKIALALDTGGVPGNG--EDSLNSDSSNLG 102

Query: 129 QTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGI 188
            TRL RIV AGGRQLL KLNSARKNFPMK+FLLLLGFYTANALAT+LGQTGDWDVLVAG+
Sbjct: 103 GTRLGRIVSAGGRQLLEKLNSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGV 162

Query: 189 VVAAIEGIGMLMYKRS-TLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           VVAAIEGIGMLMY++S +L +GRLQS+VV++NYWKAGVCLGLFVDAFKLGS
Sbjct: 163 VVAAIEGIGMLMYRKSPSLKTGRLQSIVVMVNYWKAGVCLGLFVDAFKLGS 210

[Close]

BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
Match: YC20L_ARATH (Ycf20-like protein OS=Arabidopsis thaliana GN=At1g65420 PE=2 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 1.400e-53
Identity = 111/164 (67.68%), Postives = 132/164 (80.49%), Query Frame = 1


		  
Query: 78  TNIAPKSLSFSKRSFHRGRHCWKLKFALDTGG-LSGNGNQQNDINEDSSGLGQTRLSRIV 137
           ++I   S  +  +SF   R   K+ FALDTG  + G+  +  ++N D +GLG TRL RI 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 138 IAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGI 197
           IAGG+QLL K+NSARKNFPMK+FLLLLGFYTANALAT+LGQTGDWDVLVAGIVVAAIEGI
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 198 GMLMYKR--STLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           GMLMYK+  S++ SG+LQS VV +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
Match: YCF20_MESVI (Uncharacterized protein ycf20 OS=Mesostigma viride GN=ycf20 PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.700e-20
Identity = 57/116 (49.14%), Postives = 74/116 (63.79%), Query Frame = 1


		  
Query: 127 LGQTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVA 186
           +  TRL+       + L +K+ +   NFP+K+ LLLLGF+ A  LATV GQTGDWDVLVA
Sbjct: 1   MSNTRLTLFFTNIFQLLDSKIQNYSINFPIKILLLLLGFFIATVLATVFGQTGDWDVLVA 60

Query: 187 GIVVAAIEGIGMLMYKRSTLPSGRLQSLVVL----INYWKAGVCLGLFVDAFKLGS 239
           GI+VA IE +G  MY +  +   ++  +  L    INY K G+  GLFVDAFKLGS
Sbjct: 61  GILVAMIEILGNKMYSKKYISKKQVFDISFLSLIGINYIKIGLIFGLFVDAFKLGS 116

[Close]

BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
Match: YCF20_PORPU (Uncharacterized protein ycf20 OS=Porphyra purpurea GN=ycf20 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.300e-11
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 1


		  
Query: 129 QTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGI 188
           +T+LS       + L ++L  +       +  LLLGF+ +  L+T+ GQTGDW ++ A +
Sbjct: 3   RTKLSIFFSYFVQNLSSRLYYSLNELTAGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 189 VVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           +VAAIE +  ++Y        R+     L+N  K G+  GLFVDAFKLGS
Sbjct: 63  IVAAIELVSKIVYSNKKKYGVRIN----LLNNLKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
Match: YCF20_PYRYE (Uncharacterized protein ycf20 OS=Pyropia yezoensis GN=ycf20 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.400e-11
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1


		  
Query: 129 QTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGI 188
           +TRLS       + L  KL  +       +  LLLGF+ +  L+T+ GQTGDW ++ A +
Sbjct: 3   KTRLSTFFAYLIKNLNNKLYYSLSELTTGLISLLLGFFISTGLSTIPGQTGDWGIIAASL 62

Query: 189 VVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           +VAA E    ++Y        +L   + L N +K G+  GLFVDAFKLGS
Sbjct: 63  IVAATELTSKIVYSSHK----QLNIKINLFNNFKIGITYGLFVDAFKLGS 108

[Close]

BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
Match: YC20L_SYNY3 (Ycf20-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1509 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.200e-10
Identity = 39/110 (35.45%), Postives = 59/110 (53.64%), Query Frame = 1


		  
Query: 129 QTRLSRIVIAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGI 188
           +TRL+ IV   G+QL     +  +   + +   L GF+   A+AT  GQ   WDV+ A  
Sbjct: 3   RTRLNTIVEVRGQQLSQFFRNPWRRISLSLLSFLFGFFVGTAVATTAGQNSQWDVVCAAF 62

Query: 189 VVAAIEGIGMLMYKRSTLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           ++   E +    Y+R  +  G LQ+ V  +N +K GV   LF++AFKLGS
Sbjct: 63  ILLFCELVNRWFYRRG-VKMGDLQAEV--LNIFKMGVSYSLFLEAFKLGS 109

[Close]

BLAST of Spo21353.1 vs. TAIR (Arabidopsis)
Match: AT1G65420.1 (Protein of unknown function (DUF565))

HSP 1 Score: 211.1 bits (536), Expect = 7.600e-55
Identity = 111/164 (67.68%), Postives = 132/164 (80.49%), Query Frame = 1


		  
Query: 78  TNIAPKSLSFSKRSFHRGRHCWKLKFALDTGG-LSGNGNQQNDINEDSSGLGQTRLSRIV 137
           ++I   S  +  +SF   R   K+ FALDTG  + G+  +  ++N D +GLG TRL RI 
Sbjct: 34  SSITLTSFPYPMKSFQIRRPNRKIAFALDTGSSIPGDSGEGQEMNGDRTGLGSTRLGRIA 93

Query: 138 IAGGRQLLAKLNSARKNFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGI 197
           IAGG+QLL K+NSARKNFPMK+FLLLLGFYTANALAT+LGQTGDWDVLVAGIVVAAIEGI
Sbjct: 94  IAGGKQLLGKINSARKNFPMKIFLLLLGFYTANALATILGQTGDWDVLVAGIVVAAIEGI 153

Query: 198 GMLMYKR--STLPSGRLQSLVVLINYWKAGVCLGLFVDAFKLGS 239
           GMLMYK+  S++ SG+LQS VV +N+WKAGVCLGLFVDAFKLGS
Sbjct: 154 GMLMYKKPSSSMFSGKLQSFVVFMNFWKAGVCLGLFVDAFKLGS 197

[Close]

BLAST of Spo21353.1 vs. TAIR (Arabidopsis)
Match: AT3G56830.1 (Protein of unknown function (DUF565))

HSP 1 Score: 105.9 bits (263), Expect = 3.500e-23
Identity = 58/143 (40.56%), Postives = 83/143 (58.04%), Query Frame = 1


		  
Query: 93  HRGRHCWKLKFALDTGGLSGNGNQQNDINEDSSGLGQTRLSRIVIAGGRQLLAKLNSARK 152
           H+ R  W        GG   +    +  N  S GL   RL + +     +LL K+   +K
Sbjct: 49  HQRRMSWTT-IKSSVGGDRFDPASGSSSNNSSRGL---RLIKAIQVLRSKLLVKIQEIKK 108

Query: 153 NFPMKVFLLLLGFYTANALATVLGQTGDWDVLVAGIVVAAIEGIGMLMYKRSTLPSGRLQ 212
           + P K+F LL+GFY+A A +T +GQTGDWDVL AG+ V  +E IG LMY+ S     +++
Sbjct: 109 DLPKKLFFLLVGFYSATAFSTFIGQTGDWDVLSAGLAVLVVECIGALMYRASIPLINKMR 168

Query: 213 SLVVLINYWKAGVCLGLFVDAFK 236
           S + + NYWK G+ LGLF+D+FK
Sbjct: 169 STITMFNYWKTGLALGLFLDSFK 187

The following BLAST results are available for this feature:

BLAST of Spo21353.1 vs. NCBI nr
BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
BLAST of Spo21353.1 vs. TAIR (Arabidopsis)

BLAST of Spo21353.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902190255\|gb\|KNA11578.1\|	1.5e-97	99.4	hypothetical protein SOVF_1339...	[more]
gi\|731330679\|ref\|XP_010676263.1\|	2.5e-84	79.5	PREDICTED: ycf20-like protein ...	[more]
gi\|870860580\|gb\|KMT11888.1\|	1.3e-80	80.4	hypothetical protein BVRB_5g09...	[more]
gi\|223545849\|gb\|EEF47352.1\|	2.8e-59	74.8	conserved hypothetical protein...	[more]
gi\|1000975699\|ref\|XP_002514798.2\|	2.8e-59	74.8	PREDICTED: ycf20-like protein ...	[more]

BLAST of Spo21353.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QXY2_SPIOL	1.1e-97	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8CII4_BETVU	9.1e-81	80.4	Uncharacterized protein OS=Bet...	[more]
B9RM29_RICCO	2.0e-59	74.8	Putative uncharacterized prote...	[more]
D7U6I2_VITVI	2.6e-59	75.4	Putative uncharacterized prote...	[more]
A0A0D2QHN5_GOSRA	2.2e-58	71.9	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo21353.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
YC20L_ARATH	1.4e-53	67.6	Ycf20-like protein OS=Arabidop...	[more]
YCF20_MESVI	5.7e-20	49.1	Uncharacterized protein ycf20 ...	[more]
YCF20_PORPU	1.3e-11	37.2	Uncharacterized protein ycf20 ...	[more]
YCF20_PYRYE	6.4e-11	38.1	Uncharacterized protein ycf20 ...	[more]
YC20L_SYNY3	9.2e-10	35.4	Ycf20-like protein OS=Synechoc...	[more]

BLAST of Spo21353.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G65420.1	7.6e-55	67.6	Protein of unknown function (D...	[more]
AT3G56830.1	3.5e-23	40.5	Protein of unknown function (D...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007572	Uncharacterised protein family Ycf20	PFAM	PF04483	DUF565	coord: 177..238 score: 6.5
None	No IPR available	PANTHER	PTHR33787	FAMILY NOT NAMED	coord: 61..238 score: 2.8E
None	No IPR available	PANTHER	PTHR33787:SF4	YCF20-LIKE PROTEIN	coord: 61..238 score: 2.8E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010196	nonphotochemical quenching
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane