Spo21362.1 (mRNA)

Overview
NameSpo21362.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 39356156 .. 39356647 (-)
Sequence length492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCACCATGTTTGCAGTAGACAAATTACTCGAAACCATTACAAAGAAATACAAAACTCCTACAACAAGATCAAAGCTTCAAAGAAGTCCTAAAATTGTTGGGTATGAGCGCGAGGATGATTATTCCGAGGAATCAATTAGGGAGCCTCTTCTAATTATGTCGTCTCAAGACGAGATTAATGAGTGTGATCAAGTGATGAAGAACATAACTAAAGGGGTAAGTAATAAAAACAATAATGATAATAACATAAATAATAATGTTAGAGTAAAAGTTTTGTTAACAAAAGCAGAAGCAGCAAAGTTGTTAGCAAAGTGTAAAGGGGATGAGGGGGGTTTGGATTTTAAAGATGTGGTTAATCAACTTATGAAGCTTCCCCCTCAACGGATTAATGTTGTTTCGTCTCCTTCCAAAGATTTCGACCTCGAAACCATCTCAGAAGAGGAGGAGGAGGAGGAGGAGTACGACGAGTATCAGAAGAAGAATGTATAA

mRNA sequence

ATGGTCACCATGTTTGCAGTAGACAAATTACTCGAAACCATTACAAAGAAATACAAAACTCCTACAACAAGATCAAAGCTTCAAAGAAGTCCTAAAATTGTTGGGTATGAGCGCGAGGATGATTATTCCGAGGAATCAATTAGGGAGCCTCTTCTAATTATGTCGTCTCAAGACGAGATTAATGAGTGTGATCAAGTGATGAAGAACATAACTAAAGGGGTAAGTAATAAAAACAATAATGATAATAACATAAATAATAATGTTAGAGTAAAAGTTTTGTTAACAAAAGCAGAAGCAGCAAAGTTGTTAGCAAAGTGTAAAGGGGATGAGGGGGGTTTGGATTTTAAAGATGTGGTTAATCAACTTATGAAGCTTCCCCCTCAACGGATTAATGTTGTTTCGTCTCCTTCCAAAGATTTCGACCTCGAAACCATCTCAGAAGAGGAGGAGGAGGAGGAGGAGTACGACGAGTATCAGAAGAAGAATGTATAA

Coding sequence (CDS)

ATGGTCACCATGTTTGCAGTAGACAAATTACTCGAAACCATTACAAAGAAATACAAAACTCCTACAACAAGATCAAAGCTTCAAAGAAGTCCTAAAATTGTTGGGTATGAGCGCGAGGATGATTATTCCGAGGAATCAATTAGGGAGCCTCTTCTAATTATGTCGTCTCAAGACGAGATTAATGAGTGTGATCAAGTGATGAAGAACATAACTAAAGGGGTAAGTAATAAAAACAATAATGATAATAACATAAATAATAATGTTAGAGTAAAAGTTTTGTTAACAAAAGCAGAAGCAGCAAAGTTGTTAGCAAAGTGTAAAGGGGATGAGGGGGGTTTGGATTTTAAAGATGTGGTTAATCAACTTATGAAGCTTCCCCCTCAACGGATTAATGTTGTTTCGTCTCCTTCCAAAGATTTCGACCTCGAAACCATCTCAGAAGAGGAGGAGGAGGAGGAGGAGTACGACGAGTATCAGAAGAAGAATGTATAA

Protein sequence

MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEINECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVNQLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo21362Spo21362gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo21362.1Spo21362.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21362.1.CDS.1Spo21362.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21362.1.exon.1Spo21362.1.exon.1exon


Homology
[Close]
BLAST of Spo21362.1 vs. NCBI nr
Match: gi|902196817|gb|KNA13221.1| (hypothetical protein SOVF_118660 [Spinacia oleracea])

HSP 1 Score: 305.4 bits (781), Expect = 5.800e-80
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

		  

Query: 1   MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEI 60
           MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEI
Sbjct: 1   MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEI 60

Query: 61  NECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVN 120
           NECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVN
Sbjct: 61  NECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVN 120

Query: 121 QLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV 164
           QLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV
Sbjct: 121 QLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV 163
[Close]
BLAST of Spo21362.1 vs. NCBI nr
Match: gi|731330733|ref|XP_010676292.1| (PREDICTED: uncharacterized protein LOC104892151 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 139.8 bits (351), Expect = 4.200e-30
Identity = 103/168 (61.31%), Postives = 123/168 (73.21%), Query Frame = 1 

		  

Query: 1   MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEES-IREPLLIMSSQDE 60
           M+TMF ++K+LETIT K KTP    KLQRSPKI+GYERED+    S + EPLL  SSQ++
Sbjct: 1   MLTMFTLEKILETITNKPKTPP--KKLQRSPKIMGYEREDNLEISSELNEPLL-SSSQEK 60

Query: 61  INECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVV 120
           I +CDQ  K I KGV+NK+      +NN+RVKVLLTK EAAKLLAKCK +EG LDFKDVV
Sbjct: 61  I-DCDQ-GKIIIKGVNNKS------SNNIRVKVLLTKEEAAKLLAKCK-EEGVLDFKDVV 120

Query: 121 NQLMKLPPQRINV----VSSPSKDFDLETISEEEEEE-EEYDEYQKKN 163
            +LMKLP QRINV     ++ SKD +L TI EEEEE  +EYD   KKN
Sbjct: 121 KELMKLPAQRINVAPVITTNLSKDLELGTILEEEEEVCDEYD--NKKN 154
[Close]
BLAST of Spo21362.1 vs. NCBI nr
Match: gi|870860607|gb|KMT11915.1| (hypothetical protein BVRB_5g098800 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 104.4 bits (259), Expect = 2.000e-19
Identity = 81/135 (60.00%), Postives = 97/135 (71.85%), Query Frame = 1 

		  

Query: 34  VGYEREDDYSEES-IREPLLIMSSQDEINECDQVMKNITKGVSNKNNNDNNINNNVRVKV 93
           +GYERED+    S + EPLL  SSQ++I +CDQ  K I KGV+NK++N      N+RVKV
Sbjct: 1   MGYEREDNLEISSELNEPLL-SSSQEKI-DCDQG-KIIIKGVNNKSSN------NIRVKV 60

Query: 94  LLTKAEAAKLLAKCKGDEGGLDFKDVVNQLMKLPPQRINV----VSSPSKDFDLETISEE 153
           LLTK EAAKLLAKCK +EG LDFKDVV +LMKLP QRINV     ++ SKD +L TI EE
Sbjct: 61  LLTKEEAAKLLAKCK-EEGVLDFKDVVKELMKLPAQRINVAPVITTNLSKDLELGTILEE 120

Query: 154 EEEE-EEYDEYQKKN 163
           EEE  +EYD   KKN
Sbjct: 121 EEEVCDEYD--NKKN 123
[Close]
BLAST of Spo21362.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R124_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_118660 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 4.000e-80
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 

		  

Query: 1   MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEI 60
           MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEI
Sbjct: 1   MVTMFAVDKLLETITKKYKTPTTRSKLQRSPKIVGYEREDDYSEESIREPLLIMSSQDEI 60

Query: 61  NECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVN 120
           NECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVN
Sbjct: 61  NECDQVMKNITKGVSNKNNNDNNINNNVRVKVLLTKAEAAKLLAKCKGDEGGLDFKDVVN 120

Query: 121 QLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV 164
           QLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV
Sbjct: 121 QLMKLPPQRINVVSSPSKDFDLETISEEEEEEEEYDEYQKKNV 163
[Close]
BLAST of Spo21362.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CDT3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g098800 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.400e-19
Identity = 81/135 (60.00%), Postives = 97/135 (71.85%), Query Frame = 1 

		  

Query: 34  VGYEREDDYSEES-IREPLLIMSSQDEINECDQVMKNITKGVSNKNNNDNNINNNVRVKV 93
           +GYERED+    S + EPLL  SSQ++I +CDQ  K I KGV+NK++N      N+RVKV
Sbjct: 1   MGYEREDNLEISSELNEPLL-SSSQEKI-DCDQG-KIIIKGVNNKSSN------NIRVKV 60

Query: 94  LLTKAEAAKLLAKCKGDEGGLDFKDVVNQLMKLPPQRINV----VSSPSKDFDLETISEE 153
           LLTK EAAKLLAKCK +EG LDFKDVV +LMKLP QRINV     ++ SKD +L TI EE
Sbjct: 61  LLTKEEAAKLLAKCK-EEGVLDFKDVVKELMKLPAQRINVAPVITTNLSKDLELGTILEE 120

Query: 154 EEEE-EEYDEYQKKN 163
           EEE  +EYD   KKN
Sbjct: 121 EEEVCDEYD--NKKN 123
The following BLAST results are available for this feature:
BLAST of Spo21362.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902196817|gb|KNA13221.1|5.8e-80100.hypothetical protein SOVF_1186... [more]
gi|731330733|ref|XP_010676292.1|4.2e-3061.3PREDICTED: uncharacterized pro... [more]
gi|870860607|gb|KMT11915.1|2.0e-1960.0hypothetical protein BVRB_5g09... [more]
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BLAST of Spo21362.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9R124_SPIOL4.0e-80100.Uncharacterized protein OS=Spi... [more]
A0A0J8CDT3_BETVU1.4e-1960.0Uncharacterized protein OS=Bet... [more]
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BLAST of Spo21362.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21362.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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