Spo21405.1 (mRNA) | SpinachBase

Overview


Name	Spo21405.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 39076588 .. 39078261 (+)
Sequence length	1105

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGAATTTCTTCGACAAAATTGGGGTAATGTTAATGTCAATATACGAGTAAATAGTCTTTTAAAGCTTCCTATTTTTCATGACTAGATTTTGAAGTTGCTCTTCAATTTGTTTGCTCAAGTGCTCATTCTTTTTATCTACACCGTCCAAACTGATATATTCCTCCTTTCCATTACAGTTATCCTCTGCAGCTGATCTCTAGCAGTTATTCTGAACCACTTGCGCTTTTATATCGATTTTTATAAACAAAGAATCTTACTACTTTGTGCCTTCTATAAATTGTTGCAGGTCCCTCAACAGCATCAAGCAAGAAAAAAAACTCAAAAGGAAATCTCATCAAATAAAAATCCTTCAACATTCTCAATATAATGGTCTCATCCAAACTGCAAAAACCCACAAATGAAGAACACAAATTTACACAGAAAATATCAGAGGTGACTGCTTGGGGAAACAGGATGCTTGGACACAAACAACAGGAACACCAAGCAGTGGCCAAACACTGTACCACATGCAAGTGCCCAGCACCGAAAGACACAAAACCAACATGTACTCACATACAGAAGAGAGAACATGCTAGCACCGTAGCTGCCAAAGACATGAAATCCAGTGCGTACACTGAGACAAAGAAGAAAGAAAAGGAAGGACATCCAAGTACAGTCCATAAGGATGCCAAACATACTTCTTGCATTGAGCTGAAGAAGAAGGAAAAGCAGCAAACAACAAATGTTCAAACAAAGGATTCTGAGCAGCCTGTTGGTGCTGAGATGAAGAAGACGGACAAGAAGGAACAACATGCAAAAGGCAACACAACTAACACATTGAGCAAGAAAGTTCACAAGGATGAACCAACCAACCACTGGTTTTCAAGCATGGCAGATCATTGGAAGGAGAAGATCATGATGATGAAGAAGGCCAAGGAAGGCAAGTCAAAAGATAGCAGTAGCACCAGTGACAGCGACAGTGAAGAAGAGTCCTGTGGGATAATAAAGGTATGTATTCAAAATTTTCAAATAGAAGATATCCCCTCAACTTCCTACACCAACTTCCCAGCATGAATCCCACAAATATCTGCATATTGCTAGTAAACATGCATAGCAGAGGCCAGAGAGTGCATGAAAGAAATTATAGAAGGCCTTCTTTTGTAGTCTACTATTAGAATTCCTTGTCTAAAGTCCATTCCACCCCTTTTCCTCCCACTCCCCCTCCCTCTAAATCCTCCCCTCGAAGTTGTGACCTTCTTGACTGTCCAACCCATGCAATTTGATTTATTTATTTATTTTTGCCTTACCTTGCAGACAGACAAGAGACACTACCAAGGGACCAAAACCTCGTCTAAGTGAAAGAGGCTACTGCAGAATCAACAAGGAACAAGATAATAAGGAACTATGGACCGTATAGTATTGCTTAAGTACAAGCTTTTATAATTTGATTTCCTATTTCCTCTAATTCCAATTACTTCAAATATTAATTTCGAACAATAAGATTCTTTACCTATTTTAAGATAGAATTTTCTTTTAGTTTATGAATGTCTTACTGTTTGTAAAAGCTTACCGTTATGGTCATCTTACAACTGGAACATAGACTTGGTTGTGCATTGTCACATATTACGGAGTACTAGTTTACTAATTACTAAAAGTATTTTTTTCTCAATTATGGTCAAGAACCAACCCCGCA

mRNA sequence

TAAGAATTTCTTCGACAAAATTGGGGTCCCTCAACAGCATCAAGCAAGAAAAAAAACTCAAAAGGAAATCTCATCAAATAAAAATCCTTCAACATTCTCAATATAATGGTCTCATCCAAACTGCAAAAACCCACAAATGAAGAACACAAATTTACACAGAAAATATCAGAGGTGACTGCTTGGGGAAACAGGATGCTTGGACACAAACAACAGGAACACCAAGCAGTGGCCAAACACTGTACCACATGCAAGTGCCCAGCACCGAAAGACACAAAACCAACATGTACTCACATACAGAAGAGAGAACATGCTAGCACCGTAGCTGCCAAAGACATGAAATCCAGTGCGTACACTGAGACAAAGAAGAAAGAAAAGGAAGGACATCCAAGTACAGTCCATAAGGATGCCAAACATACTTCTTGCATTGAGCTGAAGAAGAAGGAAAAGCAGCAAACAACAAATGTTCAAACAAAGGATTCTGAGCAGCCTGTTGGTGCTGAGATGAAGAAGACGGACAAGAAGGAACAACATGCAAAAGGCAACACAACTAACACATTGAGCAAGAAAGTTCACAAGGATGAACCAACCAACCACTGGTTTTCAAGCATGGCAGATCATTGGAAGGAGAAGATCATGATGATGAAGAAGGCCAAGGAAGGCAAGTCAAAAGATAGCAGTAGCACCAGTGACAGCGACAGTGAAGAAGAGTCCTGTGGGATAATAAAGACAGACAAGAGACACTACCAAGGGACCAAAACCTCGTCTAAGTGAAAGAGGCTACTGCAGAATCAACAAGGAACAAGATAATAAGGAACTATGGACCGTATAGTATTGCTTAAGTACAAGCTTTTATAATTTGATTTCCTATTTCCTCTAATTCCAATTACTTCAAATATTAATTTCGAACAATAAGATTCTTTACCTATTTTAAGATAGAATTTTCTTTTAGTTTATGAATGTCTTACTGTTTGTAAAAGCTTACCGTTATGGTCATCTTACAACTGGAACATAGACTTGGTTGTGCATTGTCACATATTACGGAGTACTAGTTTACTAATTACTAAAAGTATTTTTTTCTCAATTATGGTCAAGAACCAACCCCGCA

Coding sequence (CDS)

ATGGTCTCATCCAAACTGCAAAAACCCACAAATGAAGAACACAAATTTACACAGAAAATATCAGAGGTGACTGCTTGGGGAAACAGGATGCTTGGACACAAACAACAGGAACACCAAGCAGTGGCCAAACACTGTACCACATGCAAGTGCCCAGCACCGAAAGACACAAAACCAACATGTACTCACATACAGAAGAGAGAACATGCTAGCACCGTAGCTGCCAAAGACATGAAATCCAGTGCGTACACTGAGACAAAGAAGAAAGAAAAGGAAGGACATCCAAGTACAGTCCATAAGGATGCCAAACATACTTCTTGCATTGAGCTGAAGAAGAAGGAAAAGCAGCAAACAACAAATGTTCAAACAAAGGATTCTGAGCAGCCTGTTGGTGCTGAGATGAAGAAGACGGACAAGAAGGAACAACATGCAAAAGGCAACACAACTAACACATTGAGCAAGAAAGTTCACAAGGATGAACCAACCAACCACTGGTTTTCAAGCATGGCAGATCATTGGAAGGAGAAGATCATGATGATGAAGAAGGCCAAGGAAGGCAAGTCAAAAGATAGCAGTAGCACCAGTGACAGCGACAGTGAAGAAGAGTCCTGTGGGATAATAAAGACAGACAAGAGACACTACCAAGGGACCAAAACCTCGTCTAAGTGA

Protein sequence

MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTCTHIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNVQTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTNHWFSSMADHWKEKIMMMKKAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21405	Spo21405	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21405.1	Spo21405.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21405.1.exon.1	Spo21405.1.exon.1	exon
Spo21405.1.exon.2	Spo21405.1.exon.2	exon
Spo21405.1.exon.3	Spo21405.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21405.1.utr5p.1	Spo21405.1.utr5p.1	five_prime_UTR
Spo21405.1.utr5p.2	Spo21405.1.utr5p.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21405.1.CDS.1	Spo21405.1.CDS.1	CDS
Spo21405.1.CDS.2	Spo21405.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21405.1.utr3p.1	Spo21405.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo21405.1 vs. NCBI nr
Match: gi|902221268|gb|KNA18863.1| (hypothetical protein SOVF_066640 [Spinacia oleracea])

HSP 1 Score: 430.3 bits (1105), Expect = 2.100e-117
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M SSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC
Sbjct: 1   MASSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
           THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV
Sbjct: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTNHWFSSMADHWKEKIMMMK 180
           QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPT+HWFSSMADHWKEKIMMMK
Sbjct: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTSHWFSSMADHWKEKIMMMK 180

Query: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 222
           KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK
Sbjct: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 221

[Close]

BLAST of Spo21405.1 vs. NCBI nr
Match: gi|731330768|ref|XP_010676310.1| (PREDICTED: nucleolar protein 58-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 288.1 bits (736), Expect = 1.300e-74
Identity = 155/216 (71.76%), Postives = 179/216 (82.87%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M S+KLQKPTNEEHKF+QKISEVTAWGNR+ G KQQEHQAVAKHCTTC CPA KDTKP C
Sbjct: 1   MASTKLQKPTNEEHKFSQKISEVTAWGNRVFGQKQQEHQAVAKHCTTCHCPASKDTKPAC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
             +QK+E+A+T++ KDMKS A+  TKKKE   H ST+HKDAKHT+C ELKK+EKQ T N 
Sbjct: 61  NDLQKKENANTISVKDMKSDAHAVTKKKE---HASTIHKDAKHTTCAELKKEEKQHTANF 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTT---NTLSKKVHKDEPT-NHWFSSMADHWKEKI 180
           Q+KDS++P GAE+KK +KKE HAK NTT   NTL KK HKDEPT NH FSSMADHWKEKI
Sbjct: 121 QSKDSKKPAGAEIKK-EKKEHHAKSNTTTACNTLVKKEHKDEPTNNHCFSSMADHWKEKI 180

Query: 181 MMMKKAKEGKSKDSSSTSDSDSEEESCGIIKTDKRH 213
           MMMKKAK+GK KD+SS+S SDSE+++  I K DKRH
Sbjct: 181 MMMKKAKDGKCKDNSSSSGSDSEDDASVIKKKDKRH 212

[Close]

BLAST of Spo21405.1 vs. NCBI nr
Match: gi|902233720|gb|KNA23179.1| (hypothetical protein SOVF_027070 [Spinacia oleracea])

HSP 1 Score: 102.1 bits (253), Expect = 1.300e-18
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1

		  
Query: 83  TETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNVQTKDSEQPVGAEMKKTDKKEQH 142
           T  K+++KE H +TVHKDAKHTS IEL KKE +QTTNVQTK         MKK +KKE+H
Sbjct: 4   TRRKRRKKEEHVNTVHKDAKHTSRIEL-KKENKQTTNVQTKGFCAACWCWMKKKEKKEKH 63

Query: 143 AKGNTTNT---LSKKVHKDEPTNHWFSSMADHWKEKIM 178
           AK  TTN+   LSKK HK EPTN  FSSM DHWKEKI+
Sbjct: 64  AKSKTTNSCNALSKKEHKKEPTNQCFSSMEDHWKEKIL 100

[Close]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH88_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066640 PE=4 SV=1)

HSP 1 Score: 430.3 bits (1105), Expect = 1.500e-117
Identity = 219/221 (99.10%), Postives = 220/221 (99.55%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M SSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC
Sbjct: 1   MASSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
           THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV
Sbjct: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTNHWFSSMADHWKEKIMMMK 180
           QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPT+HWFSSMADHWKEKIMMMK
Sbjct: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTTNTLSKKVHKDEPTSHWFSSMADHWKEKIMMMK 180

Query: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 222
           KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK
Sbjct: 181 KAKEGKSKDSSSTSDSDSEEESCGIIKTDKRHYQGTKTSSK 221

[Close]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CEI0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099010 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 9.000e-75
Identity = 155/216 (71.76%), Postives = 179/216 (82.87%), Query Frame = 1

		  
Query: 1   MVSSKLQKPTNEEHKFTQKISEVTAWGNRMLGHKQQEHQAVAKHCTTCKCPAPKDTKPTC 60
           M S+KLQKPTNEEHKF+QKISEVTAWGNR+ G KQQEHQAVAKHCTTC CPA KDTKP C
Sbjct: 1   MASTKLQKPTNEEHKFSQKISEVTAWGNRVFGQKQQEHQAVAKHCTTCHCPASKDTKPAC 60

Query: 61  THIQKREHASTVAAKDMKSSAYTETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNV 120
             +QK+E+A+T++ KDMKS A+  TKKKE   H ST+HKDAKHT+C ELKK+EKQ T N 
Sbjct: 61  NDLQKKENANTISVKDMKSDAHAVTKKKE---HASTIHKDAKHTTCAELKKEEKQHTANF 120

Query: 121 QTKDSEQPVGAEMKKTDKKEQHAKGNTT---NTLSKKVHKDEPT-NHWFSSMADHWKEKI 180
           Q+KDS++P GAE+KK +KKE HAK NTT   NTL KK HKDEPT NH FSSMADHWKEKI
Sbjct: 121 QSKDSKKPAGAEIKK-EKKEHHAKSNTTTACNTLVKKEHKDEPTNNHCFSSMADHWKEKI 180

Query: 181 MMMKKAKEGKSKDSSSTSDSDSEEESCGIIKTDKRH 213
           MMMKKAK+GK KD+SS+S SDSE+++  I K DKRH
Sbjct: 181 MMMKKAKDGKCKDNSSSSGSDSEDDASVIKKKDKRH 212

[Close]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RW96_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_027070 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.200e-19
Identity = 62/98 (63.27%), Postives = 71/98 (72.45%), Query Frame = 1

		  
Query: 83  TETKKKEKEGHPSTVHKDAKHTSCIELKKKEKQQTTNVQTKDSEQPVGAEMKKTDKKEQH 142
           T  K+++KE H +TVHKDAKHTS IEL KKE +QTTNVQTK         MKK +KKE+H
Sbjct: 4   TRRKRRKKEEHVNTVHKDAKHTSRIEL-KKENKQTTNVQTKGFCAACWCWMKKKEKKEKH 63

Query: 143 AKGNTTNT---LSKKVHKDEPTNHWFSSMADHWKEKIM 178
           AK  TTN+   LSKK HK EPTN  FSSM DHWKEKI+
Sbjct: 64  AKSKTTNSCNALSKKEHKKEPTNQCFSSMEDHWKEKIL 100

The following BLAST results are available for this feature:

BLAST of Spo21405.1 vs. NCBI nr
BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
BLAST of Spo21405.1 vs. ExPASy Swiss-Prot
BLAST of Spo21405.1 vs. TAIR (Arabidopsis)

BLAST of Spo21405.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902221268\|gb\|KNA18863.1\|	2.1e-117	99.1	hypothetical protein SOVF_0666...	[more]
gi\|731330768\|ref\|XP_010676310.1\|	1.3e-74	71.7	PREDICTED: nucleolar protein 5...	[more]
gi\|902233720\|gb\|KNA23179.1\|	1.3e-18	63.2	hypothetical protein SOVF_0270...	[more]

BLAST of Spo21405.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RH88_SPIOL	1.5e-117	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8CEI0_BETVU	9.0e-75	71.7	Uncharacterized protein OS=Bet...	[more]
A0A0K9RW96_SPIOL	9.2e-19	63.2	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo21405.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21405.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description