Spo21410.1 (mRNA) | SpinachBase

Overview


Name	Spo21410.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr6 : 39060494 .. 39062956 (+)
Sequence length	2356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTGATTTAATTGATGCCATACATCCATAGTCATCAGTATGAACGTAATAGGCATCTAACATAATCCAAAAGACCTTCAATGTATGAGCAGAATAAAGGTATTCGGTCAAGGCTTAAAAGCAGCAAAAGAACCTCTAAATATTCCCAATTTCACTACTATATAAGCACACCATCTTTCCCTCTTAAATATCACCAAACAAACAAAAAACCACAAAGTACCTGACTACTACTAAGCAATGGCATACCAAGGAAACAACTACTATGAGCGGGAGGTCATCCGTGACAGCCCATGTGACTCTTACTCTGAGTACAGCAGGGTTGAGGGTGGATATGGAAGGCCTGCAGGCTACCCAATTGGCCACCAGCTACCCCACCACCACAACCACAACAATGTGGTGACTGATGTTGTATATGAGACCAGCACCATTCCTAGGTATGGACACCACCACCACCACCACGGCGGTGCTGAGGTTGTTCAGAGGCAGGAAGAGAGGATTGTTTATGAAAATGATTTCGACCCATGCAGGAGGGTATGTGTTTAAACATCAATTTTATTTTACTCAACTGGCTTATATTTTTTAATCATAATATTTCTGCCAGCCAATTTTCCCCGAGTAATGATCTTTCTTGTTTGCAGATGTACTAGATTAGTGCACCAAATCTTCTCGTGTCTGCAAGATCTAACATCAAGTGCTCAAGTATGGGTATTAGTATAATAAATTTCCCCTAAGCCATTACAGATGGTCTGTTTGCTACTAAATATTGCAGGATGCTTCTTCTACTACCATATATTGGTACTATTATTTGTAATGTATTTGACTATTCCAGTGAATTAATATGGCATTTTCGTTTAAAAAGAAGAAAGGATTATGTTCCGACTTCCGACTCCTGACATGGAATTACAGTAGCTTTGCATATTCGAGAACTACACAGAACTGATAATAGTAAAAAAAAACACTTAATCCCCTAGTAACAGAATTAATCCCATGATGTACCAATATATAAGATGATGCCTTTTGGCTTCTAAGTATTAATATTCATCATCAACAACTAAATAACTAATTTGAGTACCTACGGTAGTTTCAATCACAGAATCACAAATGTAAAAGTGCTAATACAAGTTTACTCACAATCTGCATGCTCTACGAGGAAGACAAAGAAAAAAAAATTAGCTGCCAAAGTCATGACATTCTTGATTACCTCCAATGCTATCAAACAATCGACAACGAAACCGGTCATACAGACATACAGTATGAATAAAACGAGTCACATATTGATCAATGGTTGAAACTTGAAAGCAACCCATCAACCAGTGGTCTGTGTTAAATATGCCTGCGAGAAACATTATGCAAATATTCCGTTCCCGTGCAATCTTACATAATATTAACCACTGAAGTAGTTTTCATTCTAGCTCCCAGCATTACTTGTTAAGAAGTAAAATAGTGAAAAAGACTTCAATTATTTCAGATATACCATATGTCCATATTACTATGAAGGTAAGGAACAGCTAAGAATAAATGCAAGAATGTCCTACACCCAAAGAGCGGAACACAACAGAATTTCCCTGCTCGGGAAAATAAAGTTGGATTTAACCCATAAAAGCAAGCAATAGACTGAATTACTCCCATTTTCACAACTGCGCTTCCAGCTTAAGCAACTTGACCTCAAAGATGCCAAAAAATTTCACCGAAAGGTAATTGAGTCCTACAAGCAGTTTAAACAGCTCTCACTAAATAAGCAAGATGATATTCAACCAAGACATACTAAGCAGACAAATGGAAATAAAAAAATATTCCACTTCATCACTATTTAGGATTAAAGGCATATCATTTCCCTCTCATCTCATCAAGCCAAACAAACCCAAAAATATAAAAATTAACACAGTTTTAGGCAACTAGCAAGTCTCAGTGTCTCGTTATAGTGGCTTACTACAGAATCAAATATTTCAGTGATGATGAGAGGGAAACCATACCTGATGGCCCTTATGATTCATGTTCTGGGATCTGGATACATCATGGTTGAGACTGGAATGGCAGGTGAACAATGTTGTGTACAAGGCCCACAGCATCCCTAGGTAGGAGCACCACCATCATGATGGAGCTGCAGAGGTTGTTAAGGAGGGCTTTATTTGGGTGAATGACTAGGGAGAGTATGTGTTCCAGCCGTCTACGTGACCAGCTTCGGCCTCTGAAGCCTGAACTTTTTTCTTTGATAAATTTGTCACCTACTTTTCTTTTGAAGCACTCTTTCCCAGTCCTGCAGATTTGCTAAACTAGCACTGCACATGAGTTCCTGCATACAAGTTTCGAGTCATTGACGAGAAGCATGAATAATATTAGTAGAATAAAATGCCTCCGAGTATTAGGCAATATGCTAGTGACTTTCTAGCATGTGCACTCTGCTCACTTGTACCGCTTGTGGCCTTGTGGGAGCTAGAGGTGCTTAGACCAATATTACGCTA

mRNA sequence

AACTTGATTTAATTGATGCCATACATCCATAGTCATCAGTATGAACGTAATAGGCATCTAACATAATCCAAAAGACCTTCAATGTATGAGCAGAATAAAGGTATTCGGTCAAGGCTTAAAAGCAGCAAAAGAACCTCTAAATATTCCCAATTTCACTACTATATAAGCACACCATCTTTCCCTCTTAAATATCACCAAACAAACAAAAAACCACAAAGTACCTGACTACTACTAAGCAATGGCATACCAAGGAAACAACTACTATGAGCGGGAGGTCATCCGTGACAGCCCATGTGACTCTTACTCTGAGTACAGCAGGGTTGAGGGTGGATATGGAAGGCCTGCAGGCTACCCAATTGGCCACCAGCTACCCCACCACCACAACCACAACAATGTGGTGACTGATGTTGTATATGAGACCAGCACCATTCCTAGGTATGGACACCACCACCACCACCACGGCGGTGCTGAGGTTGTTCAGAGGCAGGAAGAGAGGATTGTTTATGAAAATGATTTCGACCCATGCAGGAGGATGTACTAGATTAGTGCACCAAATCTTCTCGTGTCTGCAAGATCTAACATCAAGTGCTCAAGTATGGGTATTAGTATAATAAATTTCCCCTAAGCCATTACAGATGGTCTGTTTGCTACTAAATATTGCAGGATGCTTCTTCTACTACCATATATTGGTACTATTATTTGTAATGTATTTGACTATTCCAGTGAATTAATATGGCATTTTCGTTTAAAAAGAAGAAAGGATTATGTTCCGACTTCCGACTCCTGACATGGAATTACAGTAGCTTTGCATATTCGAGAACTACACAGAACTGATAATAGTAAAAAAAAACACTTAATCCCCTAGTAACAGAATTAATCCCATGATGTACCAATATATAAGATGATGCCTTTTGGCTTCTAAGTATTAATATTCATCATCAACAACTAAATAACTAATTTGAGTACCTACGGTAGTTTCAATCACAGAATCACAAATGTAAAAGTGCTAATACAAGTTTACTCACAATCTGCATGCTCTACGAGGAAGACAAAGAAAAAAAAATTAGCTGCCAAAGTCATGACATTCTTGATTACCTCCAATGCTATCAAACAATCGACAACGAAACCGGTCATACAGACATACAGTATGAATAAAACGAGTCACATATTGATCAATGGTTGAAACTTGAAAGCAACCCATCAACCAGTGGTCTGTGTTAAATATGCCTGCGAGAAACATTATGCAAATATTCCGTTCCCGTGCAATCTTACATAATATTAACCACTGAAGTAGTTTTCATTCTAGCTCCCAGCATTACTTGTTAAGAAGTAAAATAGTGAAAAAGACTTCAATTATTTCAGATATACCATATGTCCATATTACTATGAAGGTAAGGAACAGCTAAGAATAAATGCAAGAATGTCCTACACCCAAAGAGCGGAACACAACAGAATTTCCCTGCTCGGGAAAATAAAGTTGGATTTAACCCATAAAAGCAAGCAATAGACTGAATTACTCCCATTTTCACAACTGCGCTTCCAGCTTAAGCAACTTGACCTCAAAGATGCCAAAAAATTTCACCGAAAGGTAATTGAGTCCTACAAGCAGTTTAAACAGCTCTCACTAAATAAGCAAGATGATATTCAACCAAGACATACTAAGCAGACAAATGGAAATAAAAAAATATTCCACTTCATCACTATTTAGGATTAAAGGCATATCATTTCCCTCTCATCTCATCAAGCCAAACAAACCCAAAAATATAAAAATTAACACAGTTTTAGGCAACTAGCAAGTCTCAGTGTCTCGTTATAGTGGCTTACTACAGAATCAAATATTTCAGTGATGATGAGAGGGAAACCATACCTGATGGCCCTTATGATTCATGTTCTGGGATCTGGATACATCATGGTTGAGACTGGAATGGCAGGTGAACAATGTTGTGTACAAGGCCCACAGCATCCCTAGGTAGGAGCACCACCATCATGATGGAGCTGCAGAGGTTGTTAAGGAGGGCTTTATTTGGGTGAATGACTAGGGAGAGTATGTGTTCCAGCCGTCTACGTGACCAGCTTCGGCCTCTGAAGCCTGAACTTTTTTCTTTGATAAATTTGTCACCTACTTTTCTTTTGAAGCACTCTTTCCCAGTCCTGCAGATTTGCTAAACTAGCACTGCACATGAGTTCCTGCATACAAGTTTCGAGTCATTGACGAGAAGCATGAATAATATTAGTAGAATAAAATGCCTCCGAGTATTAGGCAATATGCTAGTGACTTTCTAGCATGTGCACTCTGCTCACTTGTACCGCTTGTGGCCTTGTGGGAGCTAGAGGTGCTTAGACCAATATTACGCTA

Coding sequence (CDS)

ATGGCATACCAAGGAAACAACTACTATGAGCGGGAGGTCATCCGTGACAGCCCATGTGACTCTTACTCTGAGTACAGCAGGGTTGAGGGTGGATATGGAAGGCCTGCAGGCTACCCAATTGGCCACCAGCTACCCCACCACCACAACCACAACAATGTGGTGACTGATGTTGTATATGAGACCAGCACCATTCCTAGGTATGGACACCACCACCACCACCACGGCGGTGCTGAGGTTGTTCAGAGGCAGGAAGAGAGGATTGTTTATGAAAATGATTTCGACCCATGCAGGAGGATGTACTAG

Protein sequence

MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYETSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21410	Spo21410	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21410.1	Spo21410.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21410.1.exon.1	Spo21410.1.exon.1	exon
Spo21410.1.exon.2	Spo21410.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21410.1.utr5p.1	Spo21410.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21410.1.CDS.1	Spo21410.1.CDS.1	CDS
Spo21410.1.CDS.2	Spo21410.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21410.1.utr3p.1	Spo21410.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo21410.1 vs. NCBI nr
Match: gi|902221274|gb|KNA18869.1| (hypothetical protein SOVF_066700 [Spinacia oleracea])

HSP 1 Score: 221.9 bits (564), Expect = 5.100e-55
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60
           MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE
Sbjct: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60

Query: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
           TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY
Sbjct: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 100

[Close]

BLAST of Spo21410.1 vs. NCBI nr
Match: gi|731330784|ref|XP_010676317.1| (PREDICTED: uncharacterized protein LOC104892175 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 148.3 bits (373), Expect = 7.200e-33
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1

		  
Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQ---------------LP 60
           MA+ G+NYYE+EVIR+ PCDSYSEYSRV+GGYGRP+ YPIGH+               +P
Sbjct: 1   MAHCGSNYYEKEVIRERPCDSYSEYSRVDGGYGRPS-YPIGHRHHNNVVSDVVYESSSIP 60

Query: 61  ----HHHN---HNNVVTDVVYETSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRR 100
               HHH+   HNNVVT+VVYE+S IP YG HHHHHGGAE+++R+EERIVYEN++DP RR
Sbjct: 61  SYGHHHHHGGAHNNVVTEVVYESSAIPSYG-HHHHHGGAEIIERKEERIVYENEYDPYRR 119

[Close]

BLAST of Spo21410.1 vs. NCBI nr
Match: gi|31879430|dbj|BAC77693.1| (salt-induced hydrophilic protein [Atriplex nummularia])

HSP 1 Score: 68.2 bits (165), Expect = 9.500e-9
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1

		  
Query: 5   GNNYYE--REVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNH-NNVVTDVVYET 64
           GNNY E  REVIR++P  +Y    RV+           G+++ HH N   NV+T++V E 
Sbjct: 9   GNNYCEAEREVIREAPYGTYGADYRVD---------EYGNRIHHHRNGLGNVITEIVSE- 68

Query: 65  STIPRYGHHHHHHGG--AEVVQRQEERIVYENDFDPCRRMY 101
             +P + H HHHHGG   E+++R+EERIV +  +DP RR Y
Sbjct: 69  --VPAHHHQHHHHGGIPGEIIERREERIV-DAAYDPYRRTY 96

[Close]

BLAST of Spo21410.1 vs. NCBI nr
Match: gi|902221275|gb|KNA18870.1| (hypothetical protein SOVF_066710 [Spinacia oleracea])

HSP 1 Score: 63.5 bits (153), Expect = 2.300e-7
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1

		  
Query: 6   NNYYERE--VIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNN-----VVTDVV 65
           +NYYE E  VIR+ P  SYS   RV+           G+++PHH++H +     VV+++V
Sbjct: 10  SNYYEAETEVIREGPYGSYSAEYRVD---------EYGNRVPHHNHHRHNGVGEVVSEIV 69

Query: 66  YETSTIPRY-GHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
            +  +  R+ G+H+H++G  E+++R+EERIV ++ +DP RR Y
Sbjct: 70  TDVISGGRHHGNHNHYNGPTEIIERREERIV-DSSYDPYRRSY 102

[Close]

BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066700 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 3.600e-55
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1

		  
Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60
           MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE
Sbjct: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNNVVTDVVYE 60

Query: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
           TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY
Sbjct: 61  TSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 100

[Close]

BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIM6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099080 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.000e-33
Identity = 75/121 (61.98%), Postives = 92/121 (76.03%), Query Frame = 1

		  
Query: 1   MAYQGNNYYEREVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQ---------------LP 60
           MA+ G+NYYE+EVIR+ PCDSYSEYSRV+GGYGRP+ YPIGH+               +P
Sbjct: 1   MAHCGSNYYEKEVIRERPCDSYSEYSRVDGGYGRPS-YPIGHRHHNNVVSDVVYESSSIP 60

Query: 61  ----HHHN---HNNVVTDVVYETSTIPRYGHHHHHHGGAEVVQRQEERIVYENDFDPCRR 100
               HHH+   HNNVVT+VVYE+S IP YG HHHHHGGAE+++R+EERIVYEN++DP RR
Sbjct: 61  SYGHHHHHGGAHNNVVTEVVYESSAIPSYG-HHHHHGGAEIIERKEERIVYENEYDPYRR 119

[Close]

BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: Q7XZR4_ATRNU (Salt-induced hydrophilic protein OS=Atriplex nummularia GN=AnSIHP1 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.600e-9
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 1

		  
Query: 5   GNNYYE--REVIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNH-NNVVTDVVYET 64
           GNNY E  REVIR++P  +Y    RV+           G+++ HH N   NV+T++V E 
Sbjct: 9   GNNYCEAEREVIREAPYGTYGADYRVD---------EYGNRIHHHRNGLGNVITEIVSE- 68

Query: 65  STIPRYGHHHHHHGG--AEVVQRQEERIVYENDFDPCRRMY 101
             +P + H HHHHGG   E+++R+EERIV +  +DP RR Y
Sbjct: 69  --VPAHHHQHHHHGGIPGEIIERREERIV-DAAYDPYRRTY 96

[Close]

BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHB3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066710 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.600e-7
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 1

		  
Query: 6   NNYYERE--VIRDSPCDSYSEYSRVEGGYGRPAGYPIGHQLPHHHNHNN-----VVTDVV 65
           +NYYE E  VIR+ P  SYS   RV+           G+++PHH++H +     VV+++V
Sbjct: 10  SNYYEAETEVIREGPYGSYSAEYRVD---------EYGNRVPHHNHHRHNGVGEVVSEIV 69

Query: 66  YETSTIPRY-GHHHHHHGGAEVVQRQEERIVYENDFDPCRRMY 101
            +  +  R+ G+H+H++G  E+++R+EERIV ++ +DP RR Y
Sbjct: 70  TDVISGGRHHGNHNHYNGPTEIIERREERIV-DSSYDPYRRSY 102

The following BLAST results are available for this feature:

BLAST of Spo21410.1 vs. NCBI nr
BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
BLAST of Spo21410.1 vs. ExPASy Swiss-Prot
BLAST of Spo21410.1 vs. TAIR (Arabidopsis)

BLAST of Spo21410.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902221274\|gb\|KNA18869.1\|	5.1e-55	100.	hypothetical protein SOVF_0667...	[more]
gi\|731330784\|ref\|XP_010676317.1\|	7.2e-33	61.9	PREDICTED: uncharacterized pro...	[more]
gi\|31879430\|dbj\|BAC77693.1\|	9.5e-9	42.5	salt-induced hydrophilic prote...	[more]
gi\|902221275\|gb\|KNA18870.1\|	2.3e-7	37.8	hypothetical protein SOVF_0667...	[more]

BLAST of Spo21410.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RIV9_SPIOL	3.6e-55	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CIM6_BETVU	5.0e-33	61.9	Uncharacterized protein OS=Bet...	[more]
Q7XZR4_ATRNU	6.6e-9	42.5	Salt-induced hydrophilic prote...	[more]
A0A0K9RHB3_SPIOL	1.6e-7	37.8	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo21410.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21410.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description