Spo21411.1 (mRNA)

Overview
NameSpo21411.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionSalt-induced hydrophilic protein
Locationchr6 : 39056106 .. 39057460 (+)
Sequence length1086
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATAGGTCATAAATTGTGAGTTTGTGACAGATCAGAAGTGGGAGTCCTCAGCATCTGTAAGTCACCACAAAGATGCCATAAATATCAGCATGAAAAGAATACGAGCCAAAGGAGAAATTCAAATTGCTCTTCGCCAAGATATTTCAGGAAAAGAAAGTTAGATCTGAAGAAAACAATAAAGCAGCAAATTCCTTTTCATAACTGGAGCTCATAGGTGTCACTTTCCTCTGCATGGATAATACTAGTAGAAGCGTCTAACGTTAATCCAAGAAGTCCTTAACTAAAAGAGGAGAATAAAAATATTCGAGCCAGGAATATAGACAAGCTAATGCACCAAAAAAAATCTCCATATTCACCACTATATAAGAACTCCATGACAGTGCTGATTTTTATTTCACTCAAGCAAAGCAAAACATTATCATAGTACCAATCTCTAAGCACTCGTAAGTCAATCAACAACAATGTCATACCTTAACCGCCCCTATGAAAGTAACTACTACGAGGCTGAGACGGAGGTCATCCGTGAGGGTCCATACGGAAGCTACTCAGCTGAGTACAGGGTCGATGAATATGGAAACCGTGTACCTCATCACAACCACCACCGTCACAACGGGGTGGGGGAGGTAGTCAGTGAGATTGTGACTGATGTCATCTCTGGGGGCCGCCACCATGGAAACCACAACCACTACAATGGGCCAACTGAGATCATTGAGAGGAGGGAAGAGCGCATTGTTGACAGTTCCTATGACCCATACAGGAGGGTATGTGTTTCTTAGATTTTAGAATTTTTATTCATTTATTCAGGGTTTACTTATTCTGAGTGTTCAATATTGGTTTCAACTCTCTTTTACGTGTCTAAAATGCTTGTTCAAATTACAACCATTTTAATTAAGAACTTAAGTTTAAAACTTGGATTAACTCATAATGATGCGGAAAGAGCCCTAAATAAGAGTTAGTTCAAACTTTTTTCCCTGTATGAAATTTTGTGGTACAATTTGGTATTTTCTAATGGCTTCTTTTTGTTCTGCAGAGCTACTGATTAATGACTGCTGCCTTCAAGATCCAGAGAAGTTGACAGCAAGTATGTATTGGAAAAATAAAACACCCCCCTTAGCCTCACGGCATGACTAGTCGCTAGGGCTTGGTGTTGTGCTGTAACTTTTACTTTTTATGATGATGTATTCCTCTCAAGTTCTAATATATGTTCCTTTTCCCTCTAGAAAAGGGATTCTACGACTTTAAGTCAGGTTCCTGATACGGAACTATCCTACTAGCTTATGTATCAATATATATGATCATATGAATTTATGGAAGCTACTAGTAAAACTGTTTTATGTGTGCAACAAACTTCCGTG

mRNA sequence

AATAGGTCATAAATTGTGAGTTTGTGACAGATCAGAAGTGGGAGTCCTCAGCATCTGTAAGTCACCACAAAGATGCCATAAATATCAGCATGAAAAGAATACGAGCCAAAGGAGAAATTCAAATTGCTCTTCGCCAAGATATTTCAGGAAAAGAAAGTTAGATCTGAAGAAAACAATAAAGCAGCAAATTCCTTTTCATAACTGGAGCTCATAGGTGTCACTTTCCTCTGCATGGATAATACTAGTAGAAGCGTCTAACGTTAATCCAAGAAGTCCTTAACTAAAAGAGGAGAATAAAAATATTCGAGCCAGGAATATAGACAAGCTAATGCACCAAAAAAAATCTCCATATTCACCACTATATAAGAACTCCATGACAGTGCTGATTTTTATTTCACTCAAGCAAAGCAAAACATTATCATAGTACCAATCTCTAAGCACTCGTAAGTCAATCAACAACAATGTCATACCTTAACCGCCCCTATGAAAGTAACTACTACGAGGCTGAGACGGAGGTCATCCGTGAGGGTCCATACGGAAGCTACTCAGCTGAGTACAGGGTCGATGAATATGGAAACCGTGTACCTCATCACAACCACCACCGTCACAACGGGGTGGGGGAGGTAGTCAGTGAGATTGTGACTGATGTCATCTCTGGGGGCCGCCACCATGGAAACCACAACCACTACAATGGGCCAACTGAGATCATTGAGAGGAGGGAAGAGCGCATTGTTGACAGTTCCTATGACCCATACAGGAGGAGCTACTGATTAATGACTGCTGCCTTCAAGATCCAGAGAAGTTGACAGCAAGTATGTATTGGAAAAATAAAACACCCCCCTTAGCCTCACGGCATGACTAGTCGCTAGGGCTTGGTGTTGTGCTGTAACTTTTACTTTTTATGATGATGTATTCCTCTCAAGTTCTAATATATGTTCCTTTTCCCTCTAGAAAAGGGATTCTACGACTTTAAGTCAGGTTCCTGATACGGAACTATCCTACTAGCTTATGTATCAATATATATGATCATATGAATTTATGGAAGCTACTAGTAAAACTGTTTTATGTGTGCAACAAACTTCCGTG

Coding sequence (CDS)

ATGTCATACCTTAACCGCCCCTATGAAAGTAACTACTACGAGGCTGAGACGGAGGTCATCCGTGAGGGTCCATACGGAAGCTACTCAGCTGAGTACAGGGTCGATGAATATGGAAACCGTGTACCTCATCACAACCACCACCGTCACAACGGGGTGGGGGAGGTAGTCAGTGAGATTGTGACTGATGTCATCTCTGGGGGCCGCCACCATGGAAACCACAACCACTACAATGGGCCAACTGAGATCATTGAGAGGAGGGAAGAGCGCATTGTTGACAGTTCCTATGACCCATACAGGAGGAGCTACTGA

Protein sequence

MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIVTDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo21411Spo21411gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo21411.1Spo21411.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21411.1.exon.1Spo21411.1.exon.1exon
Spo21411.1.exon.2Spo21411.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21411.1.utr5p.1Spo21411.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21411.1.CDS.1Spo21411.1.CDS.1CDS
Spo21411.1.CDS.2Spo21411.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo21411.1.utr3p.1Spo21411.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo21411.1 vs. NCBI nr
Match: gi|902221275|gb|KNA18870.1| (hypothetical protein SOVF_066710 [Spinacia oleracea])

HSP 1 Score: 216.9 bits (551), Expect = 1.700e-53
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60
           MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV
Sbjct: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60

Query: 61  TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY 103
           TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY
Sbjct: 61  TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY 102
[Close]
BLAST of Spo21411.1 vs. NCBI nr
Match: gi|756179876|gb|AJK93573.1| (salt-induced hydrophilic protein [Suaeda glauca])

HSP 1 Score: 150.2 bits (378), Expect = 1.900e-33
Identity = 75/102 (73.53%), Postives = 82/102 (80.39%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60
           MSYLNRPYESNYYE + EVIREGPYGSYSAEYR+DEYGNRVPHH+HH HNG+G VV +  
Sbjct: 1   MSYLNRPYESNYYEVDREVIREGPYGSYSAEYRIDEYGNRVPHHHHH-HNGIGGVVGD-- 60

Query: 61  TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY 103
              ISGG  H  H HY  PTEI ER EERIVD++YDPYRR Y
Sbjct: 61  ---ISGGHRH--HQHYGRPTEIYERTEERIVDNAYDPYRRIY 94
[Close]
BLAST of Spo21411.1 vs. NCBI nr
Match: gi|731330786|ref|XP_010676318.1| (PREDICTED: uncharacterized protein LOC104892176 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 133.7 bits (335), Expect = 1.900e-28
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSY--SAEYRVDEYGNRVPHHNHHRHNGVGEVVSE 60
           M+Y+NRPY +NYYE E EV+REGPYGS   SAEYR+DEYGNRV    HH  NG+G VV+E
Sbjct: 1   MAYINRPYGNNYYEVEKEVVREGPYGSAYGSAEYRIDEYGNRV----HHHRNGLGNVVTE 60

Query: 61  IVTDVISGGRH--HGNHNH-YNGPTEIIERREERIVDSSYDPYR 100
           +V++VI G  H  H +HNH Y  P EIIERREERI+D+SYDPYR
Sbjct: 61  VVSEVIPGHHHHPHNHHNHQYGRPAEIIERREERIIDNSYDPYR 100
[Close]
BLAST of Spo21411.1 vs. NCBI nr
Match: gi|31879430|dbj|BAC77693.1| (salt-induced hydrophilic protein [Atriplex nummularia])

HSP 1 Score: 128.3 bits (321), Expect = 7.900e-27
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60
           M+Y+NR Y +NY EAE EVIRE PYG+Y A+YRVDEYGNR+    HH  NG+G V++EIV
Sbjct: 1   MAYVNRGYGNNYCEAEREVIREAPYGTYGADYRVDEYGNRI----HHHRNGLGNVITEIV 60

Query: 61  TDVISGGRHHGNHNHYNG-PTEIIERREERIVDSSYDPYRRSY 103
           ++V +   HH  H+H+ G P EIIERREERIVD++YDPYRR+Y
Sbjct: 61  SEVPA---HHHQHHHHGGIPGEIIERREERIVDAAYDPYRRTY 96
[Close]
BLAST of Spo21411.1 vs. NCBI nr
Match: gi|902221276|gb|KNA18871.1| (hypothetical protein SOVF_066720 [Spinacia oleracea])

HSP 1 Score: 112.8 bits (281), Expect = 3.400e-22
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHH---------------- 60
           M+Y N PY +NYY  E EVIR+GP G+Y+A+YRVDEYGNR+ HH                
Sbjct: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60

Query: 61  ----NHHRH---NGVGEVVSEIVTDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDP 103
               NHH H   NG+G VV+E+VTDVI G  HH  H+        I+RREE IVDS+YDP
Sbjct: 61  PGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHH-----PGFIQRREECIVDSAYDP 119
[Close]
BLAST of Spo21411.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHB3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066710 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.200e-53
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60
           MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV
Sbjct: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60

Query: 61  TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY 103
           TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY
Sbjct: 61  TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY 102
[Close]
BLAST of Spo21411.1 vs. UniProtKB/TrEMBL
Match: A0A0C5AU59_9CARY (Suaeda glauca salt-induced hydrophilic protein mRNA OS=Suaeda glauca PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.400e-33
Identity = 75/102 (73.53%), Postives = 82/102 (80.39%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60
           MSYLNRPYESNYYE + EVIREGPYGSYSAEYR+DEYGNRVPHH+HH HNG+G VV +  
Sbjct: 1   MSYLNRPYESNYYEVDREVIREGPYGSYSAEYRIDEYGNRVPHHHHH-HNGIGGVVGD-- 60

Query: 61  TDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDPYRRSY 103
              ISGG  H  H HY  PTEI ER EERIVD++YDPYRR Y
Sbjct: 61  ---ISGGHRH--HQHYGRPTEIYERTEERIVDNAYDPYRRIY 94
[Close]
BLAST of Spo21411.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F7N2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g099100 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.300e-28
Identity = 68/104 (65.38%), Postives = 81/104 (77.88%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSY--SAEYRVDEYGNRVPHHNHHRHNGVGEVVSE 60
           M+Y+NRPY +NYYE E EV+REGPYGS   SAEYR+DEYGNRV    HH  NG+G VV+E
Sbjct: 1   MAYINRPYGNNYYEVEKEVVREGPYGSAYGSAEYRIDEYGNRV----HHHRNGLGNVVTE 60

Query: 61  IVTDVISGGRH--HGNHNH-YNGPTEIIERREERIVDSSYDPYR 100
           +V++VI G  H  H +HNH Y  P EIIERREERI+D+SYDPYR
Sbjct: 61  VVSEVIPGHHHHPHNHHNHQYGRPAEIIERREERIIDNSYDPYR 100
[Close]
BLAST of Spo21411.1 vs. UniProtKB/TrEMBL
Match: Q7XZR4_ATRNU (Salt-induced hydrophilic protein OS=Atriplex nummularia GN=AnSIHP1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.500e-27
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHHNHHRHNGVGEVVSEIV 60
           M+Y+NR Y +NY EAE EVIRE PYG+Y A+YRVDEYGNR+    HH  NG+G V++EIV
Sbjct: 1   MAYVNRGYGNNYCEAEREVIREAPYGTYGADYRVDEYGNRI----HHHRNGLGNVITEIV 60

Query: 61  TDVISGGRHHGNHNHYNG-PTEIIERREERIVDSSYDPYRRSY 103
           ++V +   HH  H+H+ G P EIIERREERIVD++YDPYRR+Y
Sbjct: 61  SEVPA---HHHQHHHHGGIPGEIIERREERIVDAAYDPYRRTY 96
[Close]
BLAST of Spo21411.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH83_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_066720 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.400e-22
Identity = 64/125 (51.20%), Postives = 77/125 (61.60%), Query Frame = 1 

		  

Query: 1   MSYLNRPYESNYYEAETEVIREGPYGSYSAEYRVDEYGNRVPHH---------------- 60
           M+Y N PY +NYY  E EVIR+GP G+Y+A+YRVDEYGNR+ HH                
Sbjct: 1   MAY-NHPYGNNYYGVEREVIRDGPCGAYAADYRVDEYGNRIYHHRNGLGNDVTEIVTDVI 60

Query: 61  ----NHHRH---NGVGEVVSEIVTDVISGGRHHGNHNHYNGPTEIIERREERIVDSSYDP 103
               NHH H   NG+G VV+E+VTDVI G  HH  H+        I+RREE IVDS+YDP
Sbjct: 61  PGHLNHHHHHPRNGLGNVVTEVVTDVIPGHYHHQRHH-----PGFIQRREECIVDSAYDP 119
The following BLAST results are available for this feature:
BLAST of Spo21411.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221275|gb|KNA18870.1|1.7e-53100.hypothetical protein SOVF_0667... [more]
gi|756179876|gb|AJK93573.1|1.9e-3373.5salt-induced hydrophilic prote... [more]
gi|731330786|ref|XP_010676318.1|1.9e-2865.3PREDICTED: uncharacterized pro... [more]
gi|31879430|dbj|BAC77693.1|7.9e-2762.1salt-induced hydrophilic prote... [more]
gi|902221276|gb|KNA18871.1|3.4e-2251.2hypothetical protein SOVF_0667... [more]
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BLAST of Spo21411.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RHB3_SPIOL1.2e-53100.Uncharacterized protein OS=Spi... [more]
A0A0C5AU59_9CARY1.4e-3373.5Suaeda glauca salt-induced hyd... [more]
A0A0J8F7N2_BETVU1.3e-2865.3Uncharacterized protein OS=Bet... [more]
Q7XZR4_ATRNU5.5e-2762.1Salt-induced hydrophilic prote... [more]
A0A0K9RH83_SPIOL2.4e-2251.2Uncharacterized protein OS=Spi... [more]
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BLAST of Spo21411.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21411.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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