Spo21487.1 (mRNA) | SpinachBase

Overview


Name	Spo21487.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	INO80 complex subunit C
Location	SpoScf_01272 : 88694 .. 90855 (-)
Sequence length	783

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACAAGTTAAAGAAGTGTCTAGAATGAATGAGTAAAATGAACTAGAAACGCCATGGTTGGTGAGAACTGAGAAGGAAGCAAGAAAGCAAGAATGGAGAGAGAAGTAGTGGAGTCAGAGTTAGTATTGCCGACTCACTTGAATTTCAAGAAACTTCAAATGTATGAGAAATACCCAAAGGGTCAACCCAGAAGCAGACACTGGAAACATCTCAAGCAGATTCTTCAAGCTGATAATTTCCAGAATTACCCTCCTGATGAACCCAATTGTGAGTTCATTTCTCATTCTCAATTTATTTTCTGTTTTTCTTTAGTGATTGTCTCTTTGGGTTTTGTAATTTCTTTGGAATTACATATGGTTGTGTTTATAATTCTGATGGGTTTGGGAATTGGGAGTTTCTGTTTGAAAATTTTGATATCTCGACCTTGATAATCGTTTCTTTGGGGTATGATGTAAACGAGATTCAATTTGATCCGAGGGTACTCGTACCTTCAAGAATTTGTCAATTTGATAAGCTGCAATTCATATTGTGAATGGACAAATAATGGTGAAAACATGTTTGTTAGGTTATGTATTAGATTAATCGAAAGAATTGGGTATTTCTATATCTGAGAAATTCAATTGTTTTTGATGTTTGTTTTCACAGATGTGAATATTGAGGCACCACCTTCAATGCATCCACCCAAGAGAGTTTGTGATATTACAGGATATGAGGTGAGCTGAGCTCCTTTTAAATTTTATAAAGCAATTGGTAATGTCAATAATTGAATTATCATCTTCTTAACAATCCGAAATCGTAATACTGATTGTGGCAGAGGGATTCACTGCTTCTGTAAAGGCATTTTTAAGTGCTGGAGTATCATTTCCTTTTGCTTACTATGGTTGTCTTTTAGGTTTAGTACTCCATATTTGGGATTAGTGTAATTTGTGTTTATCTTTAAAAAGATATAACGTTGATCTTTGTTCAGGCGAAGTCCTTAATTTCTTTAGCTTCCATATTTGTCTATTTCCTTGTGTCTATAAATGGGCGAGGAGTATGATGTTGGTTTTGATACAGAAATTTGAGATTATAATCTTGTAAGTTAGCGATGATAGAGATTTGTATTGCTGATATTCTTCAGTTAAATCAAGTCTCTGGGTTTCTTTTTCCGATTATTCAAGGACAAAAAAAAATCTTATGCTTACAGATTGCAATGGTAGTAGCTTCACGTTTGCTACATTTGAAAATCACTTCTGAATGCATCTCTTGTTTCTAGGTCTCTTCCTATAGTACTTCTCTTCATATTACTTTGGTGCCATGAGCCGTGCTTGATCCTTGACACTCCGGCTTGGGGGTCGACACTTTTGACAACTTTTTGGATTAGCTAATTTACATACAGAATAAAATACTACACTTGGGATATTTACCTTACCGGTGTCTTATTGAGTTCCTGAATTCTAGTAACTTAGGTTTTATGTGACGTTGTATTGATAGTTTGATTATTCGATACTCTTGATGGTTGTGATTGTGAGATTTTCTAGCCAATCCTAATCATTGTGATACATAATAACAAGACGGGATTTACTAGTTTGATTAGTTGATCGAGTTGTCATTGTGATACATACACATTGCTTTGTTCACTTGCCTGGCTGCTTTTCTGAAGATATCAAATTAATATCTACAATTTTGTGCAAAAAATGAGTTGGTTGCCCATAGATTGAATTTTCTGATGCAGGCACCCTATCATGATCCGAGGACCAACTTGCGTTATGCCAATGCTGAAGTCTATAAGCTGATCAGGTCACTTCCTAATGAATATGTGCAACGGTATCTGTCTCTTAGAAATGCTGCAGTTGTTCTCAAGTAGAGTATTGCTTCCCTTTTAACAGCCGTTTGTTCAGTTGATGAAGAAGATACAGTTTCACCGAAGAAACTTTCCCTTTTTTCATCACCAAGTCTCGCAGTTTGCAGTCTGAGGGCCGTGTATATACTACTGCATCACTGCAAGTATTCGTTGGTTGGGGCGTAGAATGTACAGTTTGTGGAATTATGGGTTGCTATGATATTGTAGTTTTAGAGGTTGAAATCATCTTTTGTGAAACAAATACTCTTTTCTTATGACTTTCCCCCTTTATTTTCCCCTTCATCGTAATTCAACTTACCTTTGCTATTTCATCTCGAA

mRNA sequence

AAAACAAGTTAAAGAAGTGTCTAGAATGAATGAGTAAAATGAACTAGAAACGCCATGGTTGGTGAGAACTGAGAAGGAAGCAAGAAAGCAAGAATGGAGAGAGAAGTAGTGGAGTCAGAGTTAGTATTGCCGACTCACTTGAATTTCAAGAAACTTCAAATGTATGAGAAATACCCAAAGGGTCAACCCAGAAGCAGACACTGGAAACATCTCAAGCAGATTCTTCAAGCTGATAATTTCCAGAATTACCCTCCTGATGAACCCAATTATGTGAATATTGAGGCACCACCTTCAATGCATCCACCCAAGAGAGTTTGTGATATTACAGGATATGAGGCACCCTATCATGATCCGAGGACCAACTTGCGTTATGCCAATGCTGAAGTCTATAAGCTGATCAGGTCACTTCCTAATGAATATGTGCAACGGTATCTGTCTCTTAGAAATGCTGCAGTTGTTCTCAAGTAGAGTATTGCTTCCCTTTTAACAGCCGTTTGTTCAGTTGATGAAGAAGATACAGTTTCACCGAAGAAACTTTCCCTTTTTTCATCACCAAGTCTCGCAGTTTGCAGTCTGAGGGCCGTGTATATACTACTGCATCACTGCAAGTATTCGTTGGTTGGGGCGTAGAATGTACAGTTTGTGGAATTATGGGTTGCTATGATATTGTAGTTTTAGAGGTTGAAATCATCTTTTGTGAAACAAATACTCTTTTCTTATGACTTTCCCCCTTTATTTTCCCCTTCATCGTAATTCAACTTACCTTTGCTATTTCATCTCGAA

Coding sequence (CDS)

ATGGAGAGAGAAGTAGTGGAGTCAGAGTTAGTATTGCCGACTCACTTGAATTTCAAGAAACTTCAAATGTATGAGAAATACCCAAAGGGTCAACCCAGAAGCAGACACTGGAAACATCTCAAGCAGATTCTTCAAGCTGATAATTTCCAGAATTACCCTCCTGATGAACCCAATTATGTGAATATTGAGGCACCACCTTCAATGCATCCACCCAAGAGAGTTTGTGATATTACAGGATATGAGGCACCCTATCATGATCCGAGGACCAACTTGCGTTATGCCAATGCTGAAGTCTATAAGCTGATCAGGTCACTTCCTAATGAATATGTGCAACGGTATCTGTCTCTTAGAAATGCTGCAGTTGTTCTCAAGTAG

Protein sequence

MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAAVVLK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21487	Spo21487	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21487.1	Spo21487.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21487.1.utr5p.1	Spo21487.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21487.1.CDS.3	Spo21487.1.CDS.3	CDS
Spo21487.1.CDS.2	Spo21487.1.CDS.2	CDS
Spo21487.1.CDS.1	Spo21487.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21487.1.utr3p.1	Spo21487.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21487.1.exon.3	Spo21487.1.exon.3	exon
Spo21487.1.exon.2	Spo21487.1.exon.2	exon
Spo21487.1.exon.1	Spo21487.1.exon.1	exon

Homology

[Close]

BLAST of Spo21487.1 vs. NCBI nr
Match: gi|902210570|gb|KNA16481.1| (hypothetical protein SOVF_088880 [Spinacia oleracea])

HSP 1 Score: 259.2 bits (661), Expect = 3.600e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV
Sbjct: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

[Close]

BLAST of Spo21487.1 vs. NCBI nr
Match: gi|731357649|ref|XP_010690324.1| (PREDICTED: INO80 complex subunit C [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 234.6 bits (597), Expect = 9.500e-59
Identity = 107/124 (86.29%), Postives = 120/124 (96.77%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MEREV+E+ELVLPTHLNFKK+QMYEKYPKGQ R RHWKHLKQILQA+N+QNYP DEPNYV
Sbjct: 1   MEREVIEAELVLPTHLNFKKIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPLDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHPPKR+CDITGYEAPY+DPRT +RYANAEV+KL+RSLPN+YVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPPKRICDITGYEAPYYDPRTTMRYANAEVFKLVRSLPNDYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

[Close]

BLAST of Spo21487.1 vs. NCBI nr
Match: gi|567859782|ref|XP_006422545.1| (hypothetical protein CICLE_v10029589mg [Citrus clementina])

HSP 1 Score: 228.8 bits (582), Expect = 5.200e-57
Identity = 104/124 (83.87%), Postives = 120/124 (96.77%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EV+E+ELVLPT+++FK++QMYEKYPKGQ R RHWKHLKQILQA+N+QNYPPDEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPY+DPRTNLRYANAEV+KL+RSLPNEYVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

[Close]

BLAST of Spo21487.1 vs. NCBI nr
Match: gi|734378377|gb|KHN22062.1| (INO80 complex subunit C [Glycine soja])

HSP 1 Score: 228.8 bits (582), Expect = 5.200e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 1   MEAEVVEAELVLPSYLSFKRIQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           +VLK
Sbjct: 121 IVLK 124

[Close]

BLAST of Spo21487.1 vs. NCBI nr
Match: gi|955395006|ref|XP_006591029.2| (PREDICTED: chromatin-remodeling complex subunit ies6 isoform X1 [Glycine max])

HSP 1 Score: 228.4 bits (581), Expect = 6.800e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 7   MEAEVVEAELVLPSYLSFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 66

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 67  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 126

Query: 121 VVLK 125
           +VLK
Sbjct: 127 IVLK 130

[Close]

BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAF3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088880 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 2.500e-66
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV
Sbjct: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

[Close]

BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QQT5_GLYSO (INO80 complex subunit C OS=Glycine soja GN=glysoja_008974 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.600e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 1   MEAEVVEAELVLPSYLSFKRIQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 120

Query: 121 VVLK 125
           +VLK
Sbjct: 121 IVLK 124

[Close]

BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: V4SAC9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029589mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.600e-57
Identity = 104/124 (83.87%), Postives = 120/124 (96.77%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EV+E+ELVLPT+++FK++QMYEKYPKGQ R RHWKHLKQILQA+N+QNYPPDEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPY+DPRTNLRYANAEV+KL+RSLPNEYVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

[Close]

BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: A0A067FL65_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033229mg PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.600e-57
Identity = 104/124 (83.87%), Postives = 120/124 (96.77%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EV+E+ELVLPT+++FK++QMYEKYPKGQ R RHWKHLKQILQA+N+QNYPPDEPNYV
Sbjct: 1   MEAEVIEAELVLPTYMSFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYQNYPPDEPNYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPY+DPRTNLRYANAEV+KL+RSLPNEYVQRYL+LRNAA
Sbjct: 61  NIESPPSMHPCKRICDITGFEAPYYDPRTNLRYANAEVFKLVRSLPNEYVQRYLALRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

[Close]

BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Match: I1LKE8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_U018800 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.800e-57
Identity = 104/124 (83.87%), Postives = 119/124 (95.97%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           ME EVVE+ELVLP++L+FK++QMYEKYPKGQ R RHWKHLKQI+QA+N+QNYPPDEPNY 
Sbjct: 28  MEAEVVEAELVLPSYLSFKRVQMYEKYPKGQARGRHWKHLKQIIQAENYQNYPPDEPNYA 87

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPSMHP KR+CDITG+EAPYHDPRTNLRYANAEV+K+IRSLPNEYVQRYLSLRNAA
Sbjct: 88  NIESPPSMHPCKRICDITGFEAPYHDPRTNLRYANAEVFKIIRSLPNEYVQRYLSLRNAA 147

Query: 121 VVLK 125
           +VLK
Sbjct: 148 IVLK 151

[Close]

BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IES6_SCHPO (Chromatin-remodeling complex subunit ies6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ies6 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-16
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 1

		  
Query: 29  KGQPRSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPR 88
           K QPR    ++L+QI+Q D  QN  P + +Y +IEAPPS+ P  + CD+TG  A Y DP+
Sbjct: 25  KAQPRRN--RNLRQIIQNDPVQN-EPSKFSYSSIEAPPSVLPQPKYCDVTGLLAIYTDPK 84

Query: 89  TNLRYANAEVYKLIRSLPNEYVQRYLSLRNAAVVLK 125
           T LRY N E+Y LIR LP+   Q YL LR++ VVLK
Sbjct: 85  TRLRYHNKEIYGLIRELPSGADQEYLKLRSSDVVLK 117

[Close]

BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IN80C_MOUSE (INO80 complex subunit C OS=Mus musculus GN=Ino80c PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 8.400e-15
Identity = 39/91 (42.86%), Postives = 60/91 (65.93%), Query Frame = 1

		  
Query: 33  RSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLR 92
           ++R WK+LKQIL A+    +  ++PNY +I+APPS  P K+  DI+G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDISGLLANYTDPQSKLR 159

Query: 93  YANAEVYKLIRSLPNEYVQRYLSLRNAAVVL 124
           ++  E +  IR LP++ V  YL+LR A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLALRKATSIV 190

[Close]

BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IN80C_RAT (INO80 complex subunit C OS=Rattus norvegicus GN=Ino80c PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.100e-14
Identity = 38/91 (41.76%), Postives = 60/91 (65.93%), Query Frame = 1

		  
Query: 33  RSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLR 92
           ++R WK+LKQIL A+    +  ++PNY +I+APPS  P K+  D++G  A Y DP++ LR
Sbjct: 100 KNRTWKNLKQILAAERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 159

Query: 93  YANAEVYKLIRSLPNEYVQRYLSLRNAAVVL 124
           ++  E +  IR LP++ V  YL+LR A  ++
Sbjct: 160 FSTVEEFSYIRRLPSDVVTGYLTLRKATSIV 190

[Close]

BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IN80C_HUMAN (INO80 complex subunit C OS=Homo sapiens GN=INO80C PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.200e-14
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 1

		  
Query: 33  RSRHWKHLKQILQADNFQNYPPDEPNYVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLR 92
           ++R WK+LKQIL ++    +  ++PNY +I+APPS  P K+  D++G  A Y DP++ LR
Sbjct: 101 KNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAKKYSDVSGLLANYTDPQSKLR 160

Query: 93  YANAEVYKLIRSLPNEYVQRYLSLRNAAVVL 124
           ++  E +  IR LP++ V  YL+LR A  ++
Sbjct: 161 FSTIEEFSYIRRLPSDVVTGYLALRKATSIV 191

[Close]

BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Match: IES6_YEAST (Chromatin-remodeling complex subunit IES6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IES6 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.800e-10
Identity = 32/67 (47.76%), Postives = 43/67 (64.18%), Query Frame = 1

		  
Query: 59  YVNIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLI-RSLPNEYVQRYLSLR 118
           Y ++EAPPS+ P K+ CD+TG +  Y  P  N+RY NAE+Y+LI + +     Q YL LR
Sbjct: 100 YFSVEAPPSIRPAKKYCDVTGLKGFYKSPTNNIRYHNAEIYQLIVKPMAPGVDQEYLKLR 159

Query: 119 NAAVVLK 125
            A  VLK
Sbjct: 160 GANFVLK 166

[Close]

BLAST of Spo21487.1 vs. TAIR (Arabidopsis)
Match: AT4G38495.1 (YL1 nuclear, C-terminal (InterPro:IPR013272))

HSP 1 Score: 176.8 bits (447), Expect = 8.300e-45
Identity = 84/124 (67.74%), Postives = 103/124 (83.06%), Query Frame = 1

		  
Query: 1   MEREVVESELVLPTHLNFKKLQMYEKYPKGQPRSRHWKHLKQILQADNFQNYPPDEPNYV 60
           MERE++E+++V+ + L+FKK Q YEKYPK Q  SR WKHLKQILQA+NF + PPD P YV
Sbjct: 1   MERELMEADIVVASRLSFKKKQAYEKYPKAQSSSRRWKHLKQILQAENFPDLPPDLPTYV 60

Query: 61  NIEAPPSMHPPKRVCDITGYEAPYHDPRTNLRYANAEVYKLIRSLPNEYVQRYLSLRNAA 120
           NIE+PPS  P KR+CDITGYEAPY DPRTNLRYANA V++ +RSL ++ V +YLS+RNAA
Sbjct: 61  NIESPPSTQPCKRLCDITGYEAPYVDPRTNLRYANAHVFQTVRSLSSDQVHQYLSIRNAA 120

Query: 121 VVLK 125
           VVLK
Sbjct: 121 VVLK 124

The following BLAST results are available for this feature:

BLAST of Spo21487.1 vs. NCBI nr
BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
BLAST of Spo21487.1 vs. TAIR (Arabidopsis)

BLAST of Spo21487.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902210570\|gb\|KNA16481.1\|	3.6e-66	100.	hypothetical protein SOVF_0888...	[more]
gi\|731357649\|ref\|XP_010690324.1\|	9.5e-59	86.2	PREDICTED: INO80 complex subun...	[more]
gi\|567859782\|ref\|XP_006422545.1\|	5.2e-57	83.8	hypothetical protein CICLE_v10...	[more]
gi\|734378377\|gb\|KHN22062.1\|	5.2e-57	83.8	INO80 complex subunit C [Glyci...	[more]
gi\|955395006\|ref\|XP_006591029.2\|	6.8e-57	83.8	PREDICTED: chromatin-remodelin...	[more]

BLAST of Spo21487.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9RAF3_SPIOL	2.5e-66	100.	Uncharacterized protein OS=Spi...	[more]
A0A0B2QQT5_GLYSO	3.6e-57	83.8	INO80 complex subunit C OS=Gly...	[more]
V4SAC9_9ROSI	3.6e-57	83.8	Uncharacterized protein OS=Cit...	[more]
A0A067FL65_CITSI	3.6e-57	83.8	Uncharacterized protein OS=Cit...	[more]
I1LKE8_SOYBN	4.8e-57	83.8	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo21487.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
IES6_SCHPO	1.2e-16	51.0	Chromatin-remodeling complex s...	[more]
IN80C_MOUSE	8.4e-15	42.8	INO80 complex subunit C OS=Mus...	[more]
IN80C_RAT	1.1e-14	41.7	INO80 complex subunit C OS=Rat...	[more]
IN80C_HUMAN	3.2e-14	40.6	INO80 complex subunit C OS=Hom...	[more]
IES6_YEAST	4.8e-10	47.7	Chromatin-remodeling complex s...	[more]

BLAST of Spo21487.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT4G38495.1	8.3e-45	67.7	YL1 nuclear, C-terminal (Inter...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013272	Vps72/YL1, C-terminal	PFAM	PF08265	YL1_C	coord: 74..102 score: 4.5
IPR013272	Vps72/YL1, C-terminal	SMART	SM00993	YL1_C_2	coord: 73..102 score: 3.3
None	No IPR available	PANTHER	PTHR31200	FAMILY NOT NAMED	coord: 1..124 score: 1.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0031011	Ino80 complex