Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACTAAAGAGTAATGTTTACACTTTACAGTAGCCACCTTCTAATATTTTCCTCTAACCAAATTTAACCAAAAAACAAACCACGAAATTTCCTAACGTTAAAAAAAAAAAAAAAACAGCGCACGTTATTTCGCACCAATTTGATCAAATATTATATATTTTGTTGCAACTTCAGTTTTTAAAATATGATGACTACTGTCTACTACTAGTGTGTACATACTATTCTTGGTAGTGTAGTACTATAAATAGAAGAGAAAACAACACAAACATAATCACAACACACACAACTTCTATCAAGTGATCATCCTCTTCTTCCTCCTTCCTTTTACAAAATAATATTTTCTCTATTTCTTAGCTTTATTACTTTTTACTAAAAATGGGTTCTCTTGAGGCTGCCGCTCCTCTAGGGAGGACAACCGTGCACCGCTTGATCGCGGAGGAAGGATCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCTGGCTTTGGTGTCTCTGCCGCCCTCCTTGGCTTGCCTGACTTTGGCTTGCTCACGTAAGATATCTCTCTCATTTCTCCATGTTATTGTAATTCAATATTTTTATTATTGATAGATATATTGCATTGGTATATAAAACTGACATATTATACGAGTTTGATCATATTTTAAGTCGATCAGCTCCGTTTTAAAATGATCTTTACGCTTTCCGTTTTAGTCTGTTTCGTAATGTTCTTTATTCTTTGCTTTATTATATTTTTGGACACAAAAATTTACTACTTTACTCGTTTTATTCCACAATATTTACAATTTTCCACTCACTTTCTCTTACTTTATTCATTTTTTTCTTACAGAAACCCACATTTTTACATATTTCTCTTACTTTATCCATATATTGTTATATTCAACCAACTTTTCTACTTTTATTTTAATACTTGTGCAAATAATAACTGTAAAAATAATTATGAAACGGAGATATATAGTATTACATTACCCTACATTGATATTTAAAATGACATTTGCATTGATATTATAGGACGATAAGATCGATATGAACAATTTAAGTGTGACGGGTGCATGTAAAATCATGTGTTTGTATAGTTACATTATATACAGTCAACATAATGGGACCCAATCTGTAACAATTTATGTTTTCTGAAGTAAAGCCACCTATATGTCACGGACGGGCCTTTTGACCGCCCGCGCGGCGCCTGAATCCCCGAGGCTTGATCCAGGCCAGCCTACCCCATATGCGCAACAAGCATTGTACAACACAATAGTAGAGGAAACAACACGTAATGATACTAACCTGTACCAAGATACATGCATCAGTAAGGCATACAGGCTCATGGAAGTTGCCTCATATGGGACACGCTGGGCCTTAACATCGAGAAAATATCAACACGTGACATATAGCTACTAATTAATCAATGTTGCGTACCATTAATAGTAGTGGCCCCATTTCTCCATGTTAACTCAATATTTGTTGTTTAAGATGAAATTTCAAAATTTTACCCTACAAAAATATCAATGGATATTTATAAATGACTTTTGGTGTAAATTACCGAAATCCATTGAATTTTGGATTTAAAAAAATGACGTGTTACTAACCTTTGACCCGTGCGGCCATGCCAACATTAAAATATTTTTTTAGACATAATTTATTGTCAATGAAAGAGTCTTAGTTAATAATTCATAGTCCATATCTTTATAAATATTATAATAATGGAAATCTTAATTTGTGATACAGAACAACAGAAGTAGTAGGAACTGTTCGTAGAATTACCGCTGCTGCTCCAAACTTGTGTGTCGTTGTCGATGGAGGTAACAAATATAACTTGCTAATCTTCATATTTATTCAACGGTTTAAAAGTTAAAGATGAATTATAATTAATTGAGTAAAAACAGACACTGGAGGGGGTGGCCCACTTAATGTTCAAAGGTTCATCAAAGAGTTGATTGCTGCTGGTGCCAAGGGTGTCTTTCTTGAGGTAAACTTTTGAATCAAAATTAAATGAAAAGTAAATTCAATTAGTATAATACTTATTATTTATTAATCAAATTAATGAATTTGATTTTGTTGTTCATATATAGGATCAAGTATGGCCCAAAAAGTGTGGTAAGTACAAAGTACTATTAATTAATTAACATCATCATTATTTTGAAAACATGTTAATTTAGTAATTCATATTTTTAAAAAAATTATTTACTCCTTGTTTGGTTAAATTTTTAGGTCATATGCGTGGTAAGAGTGTTGTACCGGCAGAGGAGCATGCACTTAAAATAGCAGCTGCAAGAGAAGCTATTGGTGATTCTGATTTCTTCTTGGTAGCAAGGTCTGATGCAAGGGCTCCCCATGGCCTTCAAGAAGCTATTCGACGGGCTAACCTTTACAGAGAGGTATCATATGAATATGAGAACTTGAGAAATGATGAATTATTAATGGTGTTATCTAATTATTTGTGTTAGGAGTACATTTTATTGATAGTTTTATTTAATTTGTTTTGTAGGCTGGAGCTGACGCAACCTTTGTCGAGGCACCTGCAAATCTTGAAGAGCTAAAAGAGGTTGTTAGGGATGTTAAGGGTTTGAGAATTGCTAACATGATTGAAGGTGGAAAGACTCCATTACACACACCCGCAGAGTTTAAGGAAATGGGATTCCACTTGATTGCTCATTCACTCTCAACAATTTATGCCACAACCAAAGCATTGGTTAGCATTATGAAGGTTCTTAAGGATAAGGGTACTACCAGGGATGACTTGGATCAGATTGTTACTTTCTCTGAGTTTAATGATATGATCAGCTTGGAGTCTTGGTATGAGCTTGAATCAAAGTTCAAGACCTTTACTCCAAAATCTTTGGAATCATAAGATGTGCGTGTTTATCTAGCATGCCAATTTGAGGCGATAGAAGTTAAGCGTTTAAAATAATTTCAAATCGATCATATTATTTTTCTTGTTTAGAGTTGTTTGAAATAAGGCATGGGTAATGCTTGTTAGTTTGATTTGTAGTGAAAGATCAAGATTCATATGATATTATGATGTATTCTTTTGTTTTGTTTAGCATTCCATGAGTTTATTTATGTTACGTTACTTTCCATGTAAGAAAATGAATAAAATAATTTATTCTTGCTTATTTGCTTCTAGATTTCTATATAATTTTGTTGTGGGG ACTAAAGAGTAATGTTTACACTTTACAGTAGCCACCTTCTAATATTTTCCTCTAACCAAATTTAACCAAAAAACAAACCACGAAATTTCCTAACGTTAAAAAAAAAAAAAAAACAGCGCACGTTATTTCGCACCAATTTGATCAAATATTATATATTTTGTTGCAACTTCAGTTTTTAAAATATGATGACTACTGTCTACTACTAGTGTGTACATACTATTCTTGGTAGTGTAGTACTATAAATAGAAGAGAAAACAACACAAACATAATCACAACACACACAACTTCTATCAAGTGATCATCCTCTTCTTCCTCCTTCCTTTTACAAAATAATATTTTCTCTATTTCTTAGCTTTATTACTTTTTACTAAAAATGGGTTCTCTTGAGGCTGCCGCTCCTCTAGGGAGGACAACCGTGCACCGCTTGATCGCGGAGGAAGGATCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCTGGCTTTGGTGTCTCTGCCGCCCTCCTTGGCTTGCCTGACTTTGGCTTGCTCACAACAACAGAAGTAGTAGGAACTGTTCGTAGAATTACCGCTGCTGCTCCAAACTTGTGTGTCGTTGTCGATGGAGACACTGGAGGGGGTGGCCCACTTAATGTTCAAAGGTTCATCAAAGAGTTGATTGCTGCTGGTGCCAAGGGTGTCTTTCTTGAGGATCAAGTATGGCCCAAAAAGTGTGGTCATATGCGTGGTAAGAGTGTTGTACCGGCAGAGGAGCATGCACTTAAAATAGCAGCTGCAAGAGAAGCTATTGGTGATTCTGATTTCTTCTTGGTAGCAAGGTCTGATGCAAGGGCTCCCCATGGCCTTCAAGAAGCTATTCGACGGGCTAACCTTTACAGAGAGGCTGGAGCTGACGCAACCTTTGTCGAGGCACCTGCAAATCTTGAAGAGCTAAAAGAGGTTGTTAGGGATGTTAAGGGTTTGAGAATTGCTAACATGATTGAAGGTGGAAAGACTCCATTACACACACCCGCAGAGTTTAAGGAAATGGGATTCCACTTGATTGCTCATTCACTCTCAACAATTTATGCCACAACCAAAGCATTGGTTAGCATTATGAAGGTTCTTAAGGATAAGGGTACTACCAGGGATGACTTGGATCAGATTGTTACTTTCTCTGAGTTTAATGATATGATCAGCTTGGAGTCTTGGTATGAGCTTGAATCAAAGTTCAAGACCTTTACTCCAAAATCTTTGGAATCATAAGATGTGCGTGTTTATCTAGCATGCCAATTTGAGGCGATAGAAGTTAAGCGTTTAAAATAATTTCAAATCGATCATATTATTTTTCTTGTTTAGAGTTGTTTGAAATAAGGCATGGGTAATGCTTGTTAGTTTGATTTGTAGTGAAAGATCAAGATTCATATGATATTATGATGTATTCTTTTGTTTTGTTTAGCATTCCATGAGTTTATTTATGTTACGTTACTTTCCATGTAAGAAAATGAATAAAATAATTTATTCTTGCTTATTTGCTTCTAGATTTCTATATAATTTTGTTGTGGGG ATGGGTTCTCTTGAGGCTGCCGCTCCTCTAGGGAGGACAACCGTGCACCGCTTGATCGCGGAGGAAGGATCGGTGTTGATGCCCGGTATCCAAGACGCCTTCTCCGCCGCCATTTGTTACAAAACTGGCTTCAAAGCTTGTTTTGTCTCTGGCTTTGGTGTCTCTGCCGCCCTCCTTGGCTTGCCTGACTTTGGCTTGCTCACAACAACAGAAGTAGTAGGAACTGTTCGTAGAATTACCGCTGCTGCTCCAAACTTGTGTGTCGTTGTCGATGGAGACACTGGAGGGGGTGGCCCACTTAATGTTCAAAGGTTCATCAAAGAGTTGATTGCTGCTGGTGCCAAGGGTGTCTTTCTTGAGGATCAAGTATGGCCCAAAAAGTGTGGTCATATGCGTGGTAAGAGTGTTGTACCGGCAGAGGAGCATGCACTTAAAATAGCAGCTGCAAGAGAAGCTATTGGTGATTCTGATTTCTTCTTGGTAGCAAGGTCTGATGCAAGGGCTCCCCATGGCCTTCAAGAAGCTATTCGACGGGCTAACCTTTACAGAGAGGCTGGAGCTGACGCAACCTTTGTCGAGGCACCTGCAAATCTTGAAGAGCTAAAAGAGGTTGTTAGGGATGTTAAGGGTTTGAGAATTGCTAACATGATTGAAGGTGGAAAGACTCCATTACACACACCCGCAGAGTTTAAGGAAATGGGATTCCACTTGATTGCTCATTCACTCTCAACAATTTATGCCACAACCAAAGCATTGGTTAGCATTATGAAGGTTCTTAAGGATAAGGGTACTACCAGGGATGACTTGGATCAGATTGTTACTTTCTCTGAGTTTAATGATATGATCAGCTTGGAGTCTTGGTATGAGCTTGAATCAAAGTTCAAGACCTTTACTCCAAAATCTTTGGAATCATAA MGSLEAAAPLGRTTVHRLIAEEGSVLMPGIQDAFSAAICYKTGFKACFVSGFGVSAALLGLPDFGLLTTTEVVGTVRRITAAAPNLCVVVDGDTGGGGPLNVQRFIKELIAAGAKGVFLEDQVWPKKCGHMRGKSVVPAEEHALKIAAAREAIGDSDFFLVARSDARAPHGLQEAIRRANLYREAGADATFVEAPANLEELKEVVRDVKGLRIANMIEGGKTPLHTPAEFKEMGFHLIAHSLSTIYATTKALVSIMKVLKDKGTTRDDLDQIVTFSEFNDMISLESWYELESKFKTFTPKSLES Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo21589.1 vs. NCBI nr
Match: gi|902167267|gb|KNA07347.1| (hypothetical protein SOVF_172690 [Spinacia oleracea]) HSP 1 Score: 595.9 bits (1535), Expect = 4.000e-167 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1
BLAST of Spo21589.1 vs. NCBI nr
Match: gi|902167268|gb|KNA07348.1| (hypothetical protein SOVF_172700 [Spinacia oleracea]) HSP 1 Score: 576.2 bits (1484), Expect = 3.300e-161 Identity = 294/304 (96.71%), Postives = 298/304 (98.03%), Query Frame = 1
BLAST of Spo21589.1 vs. NCBI nr
Match: gi|902218930|gb|KNA18181.1| (hypothetical protein SOVF_073210 [Spinacia oleracea]) HSP 1 Score: 548.1 bits (1411), Expect = 9.500e-153 Identity = 278/306 (90.85%), Postives = 289/306 (94.44%), Query Frame = 1
BLAST of Spo21589.1 vs. NCBI nr
Match: gi|902218929|gb|KNA18180.1| (hypothetical protein SOVF_073200 [Spinacia oleracea]) HSP 1 Score: 546.2 bits (1406), Expect = 3.600e-152 Identity = 277/305 (90.82%), Postives = 288/305 (94.43%), Query Frame = 1
BLAST of Spo21589.1 vs. NCBI nr
Match: gi|731362409|ref|XP_010692873.1| (PREDICTED: petal death protein-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 538.9 bits (1387), Expect = 5.800e-150 Identity = 272/302 (90.07%), Postives = 290/302 (96.03%), Query Frame = 1
BLAST of Spo21589.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172690 PE=4 SV=1) HSP 1 Score: 595.9 bits (1535), Expect = 2.800e-167 Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1
BLAST of Spo21589.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QKY2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172700 PE=4 SV=1) HSP 1 Score: 576.2 bits (1484), Expect = 2.300e-161 Identity = 294/304 (96.71%), Postives = 298/304 (98.03%), Query Frame = 1
BLAST of Spo21589.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFB8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073210 PE=4 SV=1) HSP 1 Score: 548.1 bits (1411), Expect = 6.600e-153 Identity = 278/306 (90.85%), Postives = 289/306 (94.44%), Query Frame = 1
BLAST of Spo21589.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFD0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_073200 PE=4 SV=1) HSP 1 Score: 546.2 bits (1406), Expect = 2.500e-152 Identity = 277/305 (90.82%), Postives = 288/305 (94.43%), Query Frame = 1
BLAST of Spo21589.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDW4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g023220 PE=4 SV=1) HSP 1 Score: 538.9 bits (1387), Expect = 4.000e-150 Identity = 272/302 (90.07%), Postives = 290/302 (96.03%), Query Frame = 1
BLAST of Spo21589.1 vs. ExPASy Swiss-Prot
Match: PDP_DIACA (Petal death protein OS=Dianthus caryophyllus GN=PDP PE=1 SV=1) HSP 1 Score: 499.2 bits (1284), Expect = 3.200e-140 Identity = 247/300 (82.33%), Postives = 273/300 (91.00%), Query Frame = 1
BLAST of Spo21589.1 vs. ExPASy Swiss-Prot
Match: CPPM_ARATH (Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic OS=Arabidopsis thaliana GN=At1g77060 PE=2 SV=2) HSP 1 Score: 371.3 bits (952), Expect = 1.000e-101 Identity = 179/286 (62.59%), Postives = 224/286 (78.32%), Query Frame = 1
BLAST of Spo21589.1 vs. ExPASy Swiss-Prot
Match: DML_EUBBA (2,3-dimethylmalate lyase OS=Eubacterium barkeri GN=Dml PE=1 SV=1) HSP 1 Score: 228.8 bits (582), Expect = 8.000e-59 Identity = 120/282 (42.55%), Postives = 175/282 (62.06%), Query Frame = 1
BLAST of Spo21589.1 vs. ExPASy Swiss-Prot
Match: PRPB_AERPE (2-methylisocitrate lyase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=prpB PE=3 SV=2) HSP 1 Score: 194.1 bits (492), Expect = 2.200e-48 Identity = 108/279 (38.71%), Postives = 172/279 (61.65%), Query Frame = 1
BLAST of Spo21589.1 vs. ExPASy Swiss-Prot
Match: PRPB_BACHD (2-methylisocitrate lyase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=prpB PE=3 SV=1) HSP 1 Score: 188.7 bits (478), Expect = 9.200e-47 Identity = 111/275 (40.36%), Postives = 161/275 (58.55%), Query Frame = 1
BLAST of Spo21589.1 vs. TAIR (Arabidopsis)
Match: AT1G21440.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 377.9 bits (969), Expect = 6.000e-105 Identity = 179/286 (62.59%), Postives = 232/286 (81.12%), Query Frame = 1
BLAST of Spo21589.1 vs. TAIR (Arabidopsis)
Match: AT1G77060.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 371.3 bits (952), Expect = 5.600e-103 Identity = 179/286 (62.59%), Postives = 224/286 (78.32%), Query Frame = 1
BLAST of Spo21589.1 vs. TAIR (Arabidopsis)
Match: AT2G43180.1 (Phosphoenolpyruvate carboxylase family protein) HSP 1 Score: 135.6 bits (340), Expect = 5.200e-32 Identity = 91/287 (31.71%), Postives = 159/287 (55.40%), Query Frame = 1
BLAST of Spo21589.1 vs. TAIR (Arabidopsis)
Match: AT3G21720.1 (isocitrate lyase) HSP 1 Score: 62.4 bits (150), Expect = 5.600e-10 Identity = 39/93 (41.94%), Postives = 53/93 (56.99%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21589.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21589.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21589.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21589.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|