Spo21873.1 (mRNA) | SpinachBase

Overview


Name	Spo21873.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Outer envelope protein 61 (Tetratricopeptide repeat domain-containing protein 7)
Location	Super_scaffold_232 : 1578811 .. 1586910 (+)
Sequence length	3509

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTCCCTCCTTTACCAAATTTCATTCCCCGCCTTTTGTTTCTCGCAGCCTGCTTCCTTCTCGTTGGTTGCTGCCCTAACACCACTGTTTCTTTCCCAAGTCCCAACAACGTCCACCCCAAAAGCACCACCGCGTCATGGCTGCCATATCCCCCCATCCGCGTTTCTCCCCCCCTTGCGCGACTCTCCTGCGTTTCTGGAAGCCGTGTCGCCTACTACTGGAAGCTTCCCCCCGTGTTTAATTCTCCGACTCGCCCACTGTTGGAAACCGCCTCATCGCCTCTCCTGCGTGCACTTCCGCCGTCGCTGGCTCTCCTCCCGTTGGCTACCCTAGGTTATTTCTGCGATTTTATTAATTATCACCATTTTTGTTAATTTTGTTCTGCAAATTTGATAATTATCCCTCAAAGTACCAATGAGTGAATTAACCACCAGTTAGTTTTGTTAGTTCTGTTAACCGCAGGTTAAATTTATTAAAATTTTTGCAATTTTGTGAATTAACCACCAGTTTTAAGCCCTGTAAGTAGTTTTGAGTTGCCATTTGATGAATCAGTGTAGAAGTGAAAGTCTGTTGGAAGTGATATTATACCTCCTTTGGATCTGTTAGCATCCCAACCATCGAGAACGAATTGCATCCCAACCATATAAGAATGAATTGTATCCCAACCATATAAGAATGAATTGCATCCTGATTTTCAGCAATTGAAAAAATGTAAAAGTTAGCAATTGATGTAAGCACCTTTTGGAAGTGTCCAACCTAGTTAACGATGTCAGCAAGGTGTGCAACCTTTCCGGGATAAGTGTCAACACCAGTAGCTAATACTACCGCCTCTAATTCACCTTGTTTACGGGTTGAACCAGAGAAGACCTCACTACTATACCATAACAGTTCTTTGAGTTATCCCTCGAAATAATTAGTTTGATAATGAAAGCTGGAAGTTTATGGGATTAATGCTTGCTATATATTCTTCCGTTGTGTGTTGGTCGTGTTGTATACCTTGATTCTGATGTGGTTGTTGTTGATGATATATCCACACTTTACAATTTCAACTTAGTTGATGACAAAGTATTGTCTGCCCCTGAGTATTGTAATGCCAACTTTAATACCTATTTGAACTTGCATGTTAATAATTAGTCAAATAATTGAATCTGTTTTTATTTGAAATCACATGAATATGCCTAACATGCTTGTGCCTGTAACTTTTACAATTCGTTTATGGAAATGAGCTTCACAACCAGGGAAATATCATGATGCTGCACAGAAATACTTGCGTGTGAGTGTGCTATTGTTTTCTTCATTATAAAGATACATTTTGGTTAGTAATCCCATCAGTTATCATTTTTATTGGTAGGCAAAAAACAATTGACAAGGGGCTCCTGTTGCCTGAAGTATAACACTGCAGTTGGCATGCTCAGTTAATCTGATGTCATGTTACTTAAAATCTAGGCAATTTCATGACTGCGTCATATAAGGCTTTGAAGTATTTTTTAAATCATTTTCCTGAAAACTACTCTGTATGGCAATAAGATGTTATTGTTTCAGTGACTTCACCTCATATTTGTCAATGTTGCACTTGGTTTACTAATGGCCATGTTTTCCCGCCTATCACCCCCAATACTTTTAAGCTAGTGTGGGATCGAGGGGCAATTTAATTTTCTGATTTTGTCAATTTTGAGAGTATTATTTTGGTTCTTTGACTTCGTAAATTTATGTTTTTGTTTCAGGTCTTGGCCTGCGATGAAAAGAATGTCAAGGCCTTATACCTTAGGGGCCAAGCATGCAAAGAATTAGGTCAATTAGAGGTAATTATCTGTAATTTGTTTCTTTTTGGCTGGGTAATGGTAAGTTTATATTTATATGGCAGTGAGTTTCTATATAAGGGCTTCAATGTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTGATATCTCTGGTTACTTTCTGTATTCAATTTGTCCTAAAATGTTGTTTTTGATCTGGCAAAGGCACTTGAAGTTACCCCTGGCGATGACACAATTGCTGAAGTTTTAAGGTATTTTGGTGTTTTTTTCTGATGTTTTTGACTCTGCATTATTTGATGTTAACCAGTGCATACCTTTTTAATTGTGTCAAGTGTGATGCTTTGCCAAGTTCTAGAGAATTTATAGTACGAGTATTTGTAAAGATTTTGTTAGGTTTGCTAGTTTCATGCAAAAAAAGACTTCTTATATTTATTGAGGTTAACATGATCATATCTGAATTGAGGTTTTTTTCATTCATACCACAGGGAGGCTAAAGAAAGTCTAGGAAAAGGAGATGTCACGCGAACTTCAACAGGTATTATATTACACGAGTAGTTAGGGTAACAAAACTTTTTGCTTTTGTTGTTATTGGCCTTTTTTTAGTGGAATCATTTTTATTGATGAGTCTTACAGAATTGGTAAAAGTGAAAAGACCAGATAAACTTCCTACATGACATATAATAAATAGGTTGGTCTCTTTTTCTTGCTTGTCTGCAGATCATTCCCAGCTCTTTGGGTTCATCAAGTGGTAGATTGAGTTTAAAGTCTCGTTCAAAATGTACCTGTTGATGATATTGATGTTGTTGGTGAGAAGAGCAACTCTTCTGGTTTATATTCCAATCCAGGAAGTTCATCCCAATCAAGTTTTCCTACATCAATGGGTGATATGCAAGAACCGATGAGAAAGAAGATGAAGATCTTGCCATGAGAACAGTGAGTTGGCTGATAATTATCGTTTCGGAATTGCATTTTATATGTTTCTTAACCTATAAGTGCAACTCTAATTTAAAATTTGAGATGAGATATTTAATGCCTCTAGAATGCTGATGTATTCTGTTGTTGTTATGGCATCTATCAGGTGTTCTCTTTGATGTTGAAAATTATGAGTCCATATATGATGGCCAGCTTGAGTGAGCAATTAATTTGGCCTTAAGCTTCCAAAGAAGACGCTGCAAAAGCTCAAAAATCCATTATAACATTGTCACCTGAAGATCTGGATAAAATGGTACTTTATGTTTCTATCAAATTTCTCTAGTTGTCTTAACGAGTCACCATACTCACCAAAGTATTACATTATTTCGAAAAGATATCAATGAGTTTCCAATTTCAACTATGTACCAAAAATGTGTTGCCTGATGAGCGAAAACGGTTATTTTAGTCAAAATATGACATATAACGATCAAACAAGCCATAAATGTGCATAACTTAGCCGAAGTAGCTGAGAATAAGTCTTAGAAACATAAAACTAAGTATAATAAACATGTAAGGGTTATAGAACACCTATTTAGATTCATTAGTTGAGAGTTGGGAGCGAAAATGATCATCATAGTCAAAATATGACGTATAACGGTCAAACGAGCGTTAAATGTACATAACTTGACCAAATTGGGTGAGAATCAGTCTTAGCTACATAAAACTAAGTATATTAAACATGTAAAGGGTTTTGAAAACCTATTTAGGTTCATTAGTTAAGAGTTTGGAGCGAAAACGACAATTTAAGTCAAAATATTATATAACAATAAAACGAGCCTTAAATTTGCATAACATAACCAATATAGCAGATAATGAGTCTTTTCTACCTAATACCAAGAATATTAAACATGTAAATGGTTTTAAATACCTATTTAGGTTCATTAGTTGATAGTTGGGACCGAAAATGGTTGTTTTAGTCAAATTATGACATATAACAATTAAACCAGACTTAAATATGCATAACTTAACCGAAGTAGCTAAGAATGAGCCTTAAAAACATAAAAATGAGTATACTAAAAATGTAAATGGTTTAGAATACCTATTTATCTTCATTAGATGTGAGTTGGCCAAAAATGAGTATAACTAACAAACAAGCCTTAAATGTGCATAACTTGACATAAGTAGATGAAAATGAGTCTTATCAACCTAATACTAAGTATATTAATCAGGTAATATGTTTATAATACCTATTTAAGTTCATGGGTTGAAAGTTGGAAGCGAAAACAAACATTATAGTCAAAATATGACCTATAAATATCAAACAAGCCTTAAATGTGCATAATTTGACCAAAGTAGATGAGAATGAGTTGTAGCAACCTAATATTTGGTATATAAAACATTTAAAGGGTTTAGAGTACCTATTTAAGTTCATTGGTTAGAGTTGGGAGTGAAAACGACTATAATTGTCAAAGTATGACATATAACGATCAAACGAATCTTAAATGTGCATAACTTGACCAAAGTAGATGAGAGTGAGTCTAGAAATCTATTACTAACTATATTAAACATTTAAAGGGCTTAGAATACTTATTTAGGTTCATTAGTTAAGAGTTGGAACCAAAAACGACCATTTTAGTCAAAATATGACATATAACGATCAAACGAGCCTTAAATTGCACAAGTTGACCAAAGTAGAGGAGAATGAGTCTTACCATCCTAATATTAAGTATATTAAATATGTAAAAGGCTTAGAATACCTATTTGGCTTCATTTGTTGAGAGTTGTGAACGAAAATAACCATTATAGTCAAAATATGTTCTATAACGGTCAAACAAGCCTCAAATGTGCATAACTTGACCGAAGTGGATGATAATGAGCCTCAGCAACCTAATACTAAGTATATGAAACGTGTAAAGGATAGATAATACGTATTTAGGTTCATTAGTATAGAGTTGGGAGCGAAAACGACCATTATATAACGATCAAACGAGCCACAAATTGCATAACTTGACCAAAGTTGCTGTGAATGAGACTTATCATCCTAATATTAAGTATATTGAACATGTAAAGGGTTTAGAATACCTATTTAGCTTCATTAGTTGAAAGTTGGGAGCGAAAACAACAATTATTGTCAGAATATGACATATAACGATCAAACAAACCTTAAATTGCATAACTTGATCAAAGTAGATGAGAATGAGTCTTAGAATCCTAATATTAAGTATATTGAACATGTAAAGGGATTAGAATACCTATTTAGCTTCATTAGTTGAGAGTTGGGAGCGAAAACAACAATTATAGCCAAAATATGACATATAACGATCAAACGAGTCTCAAATTGCATAACTTGACCAAAGTAGATGAGAATTAGTCTTATCATCCTAATATTAAGTATATTTAATATGTAAAGGTCTTAGAATATGTATTTAGGTTCATTAATTGAGAGTTGGGAGCGAAAACATCAATTATAGTCAAAAAATGTCCTACACCGTTCAAGCGAGCGTTAAATGTGCATAAGTTGACCAAGTAGATGAGAATGAATCTTATCATCCTAACATTAAGTATATTAAACGTGAAGGGTTTGGAATACTTATTGGTTCATTAGTTAAGAGTTGGAACCGAAAATGGCCATTTAAGTGAAAATTGTTCATATAACTCAATTATTGTTTCAAAATAATGTTTATATTATATTTTACAATATTCATGTCTCTAACTAAACTATTTTGTGAAATACATTTTGAAGATGATATACATTTTGAAGATGATATGATATGATAGAGGATATGATACATTTTGAAGATGATATGATAGAGGAGAGAGAATGTTAGAGAGAGAAGCTGGAGGGAAATCCTCTCCAGCTACGAATACAACCACCGCCCTCACGGTAAACTCCATCTTGACAGGGACCGTGCACTCCGTCCAGCAGCACCAACAGGCACGACCAAGGGGTAAGAGTCAACCACCAACATCATCAACCACCTCTCAACCACAAATTTCCATATCTCCAACAGAAACTTGCACACACCCCCAAACAACACCATCCATAACAGCATCCCTTCCTAAGACCTTTAGAGATGTTGTTTCTCTGGAACACCCACTTACCATATCCTTAAAACAACCAACACAAATCAAGCCACATCTACCATACTCCACTACCCCACCACCACCAGTAACCCTAGGGGATGGTCTTTTCCTACCAGTTTCAAAGGAGAAGTATGAGGAAATCTCCAAGCCATGGCTAGAATCGGTGATTGTAAAAGTAATAGGTAAATCCTTTGAAAAACAATTTTTCCGTAAGGAAATGATGAGAATATGGAGCATACAGTCAAAATTGGAACTTCTGGCCCTAGGGAAGGGTTTCTATGCAGTTCACGGGCTACCAGCAGAAGCTAGAACTAATGTTCTGGCAAATGGTCCATGGTTCATTATGGGAGCCTTACTGTGGACAAGAAACTGGGAACCATCCTTTAGACCGTCCATGGCCAACGTTGATATGGGACCAGTTTGGGTCACCCTACCAGAACTCCCCCTAGAATTCTACTCAAAAGAGATGCTGGAAGGAATTGGCCAACAACTGGGCACACTGGTTAAGGTGGATACACATTCTCTTAGGGGGGAAGCGAGGAAATTTGCGAGCCTTTCCGTGCTTGTACCAAAGGGAACACCACCAGCAAAGGGAATTTGGCTAGGAAGAACTTACCAACCCTTTGTCTACTCAACAGGCATCTGGTTCTGTAAGGGGTGCAACGCTTTTGGTCATGCAAATGACTCGTGCTCAAAAAATAAAAATGGCAACACCCAAACACTTGAAAAAGGAGATGGAAACATGGCCAAACAGAGGTGGACCAGTGAAGAAGACGAAACGTGGAAAATGATTAGTAGAAAAGGAAGGAAGATTAATGATAATCACGTCATTAGTAGGGGGGGCCAACCCACTAACCAACAAAGGTGGACCCCAAAAAAGAACAAGGAGCCGTCGTTTGCAGAGGAAAAAACTTATGGGGAACCCTCAAAAATTTCGGAAAGTGTGAGAACAGAAGAAGTATTCATGGAACACACCTCCAATCCTTTCTCTGCTCTAGAATCCCTTGAATCTAGGGAAATAGAAGATGAAGAACTGATGGAAAACCCATCAACCACTATACCCTTGCCACGCAACACTCAAACTCCCTCGAAACCCAACACTCAATCTGTAACCACCCTACCCTTCATCCAAACCCTTACTCTACCCCGTAATGATGGCACGACACGAAACCCAAACACAAACCATAGCCAAATTCAAATAACTTCCACTTCCCAACACAATACCCAAAACACAAACATCAGCCATGACCCCTCCAAAAACACTATCACCTCAATCCTCAACAGGAAGCTCATCACCCACCACCTCGACAGCCTCACCTCCATTAATGGAGTCGGAACCACCCATTCTCCTCCGCTGCCCCTCGCTCCCCCTAAAACCAGAAATAAATCTCCACAACACCTTTTATCTCCTACCCTGCCAATTCCACCTTCAAGAACTATCACTACAAGAAGTCAAGCAAGTCATTCTCAACCCGAAATCAGCTCCACCAGAGGTGGACGATCTTTTAATGTTCACGGGGGGAGAAGACTTCGAAATAGCCCACCTACCTCAATTTTACAACGGAGATCACCTTCCGCCGGTGATGGCCGTCTTCATGGAATGGCTTCTCAAGAAAGAGGTCGGAGTCGAACAAGAGGAAATCGGTCTCCTTCACAACCTGGGCCCATGGCTCGACCCACCCCCCCTTCTCCCGAAGTGGAGACAATTTGCCCAACTCAGGGATGCTCCGATCAGAGTGAAAGCCACATGCAACACAAACGCTTTGATGGCCATGTCGATCCTTCCAAAGCTCAAACAACTCTCAATTCGGGTGAACTGGGAAGAGGTAAGAGGAAAAAGAAACCTAAGGGTCACAAAGATCCATGCAATTCCTCAGAGGGAGAAGTGGGTGTGCCCCATCACTCACGAAGAGATCGACCCGAGGTGGGAAGCCCAAACGGCAAAGGTCAAGGCGATGAAACGCCAACCTAAATTACCTTATAATATGTCAATTATCTACTGGAATGCTAGGGGAATTGGTAGGAAGTCTTTCAACCCCAACTTCCGTCATCTATTAACTACTCACAAGCCTGATATGGTTATCATCTCTGAAACGCAAGCTGGTCGAGCCAAAACCGCTAGGATAGTTGCTAACCTCCCCTTTGACTCTTGGTACTTGGTCGAGCCGGTGGGAGTTGCTGGAGGCATTCTTCTGATGTGGAGGACGGACCGCATCAACGTCCACATCATCAATGAGAATCGCCAAGGAGTACATGGC

mRNA sequence

ATGAAATTCCCTCCTTTACCAAATTTCATTCCCCGCCTTTTGTTTCTCGCAGCCTGCTTCCTTCTCGTTGGTTGCTGCCCTAACACCACTGTTTCTTTCCCAAGTCCCAACAACGTCCACCCCAAAAGCACCACCGCGTCATGGCTGCCATATCCCCCCATCCGCGTTTCTCCCCCCCTTGCGCGACTCTCCTGCGTTTCTGGAAGCCGTGTCGCCTACTACTGGAAGCTTCCCCCCGTGTTTAATTCTCCGACTCGCCCACTGTTGGAAACCGCCTCATCGCCTCTCCTGCGTGCACTTCCGCCGTCGCTGGCTCTCCTCCCGTTGGCTACCCTAGGGAAATATCATGATGCTGCACAGAAATACTTGCGTGTCTTGGCCTGCGATGAAAAGAATGTCAAGGCCTTATACCTTAGGGGCCAAGCATGCAAAGAATTAGGTCAATTAGAGGCACTTGAAGTTACCCCTGGCGATGACACAATTGCTGAAGTTTTAAGGGAGGCTAAAGAAAGTCTAGGAAAAGGAGATGTCACGCGAACTTCAACAGATCATTCCCAGCTCTTTGGGTTCATCAAGTGGTAGATTGAGTTTAAAGTCTCGTTCAAAATGTACCTGTTGATGATATTGATGTTGTTGGTGAGAAGAGCAACTCTTCTGGTTTATATTCCAATCCAGGAAGTTCATCCCAATCAAGTTTTCCTACATCAATGGGTGATATGCAAGAACCGATGAGAAAGAAGATGAAGATCTTGCCATGAGAACAGTGTTCTCTTTGATGTTGAAAATTATGAGTCCATATATGATGGCCAGCTTGAGTGAGCAATTAATTTGGCCTTAAGCTTCCAAAGAAGACGCTGCAAAAGCTCAAAAATCCATTATAACATTGTCACCTGAAGATCTGGATAAAATGATGATATACATTTTGAAGATGATATGATATGATAGAGGATATGATACATTTTGAAGATGATATGATAGAGGAGAGAGAATGTTAGAGAGAGAAGCTGGAGGGAAATCCTCTCCAGCTACGAATACAACCACCGCCCTCACGGTAAACTCCATCTTGACAGGGACCGTGCACTCCGTCCAGCAGCACCAACAGGCACGACCAAGGGGTAAGAGTCAACCACCAACATCATCAACCACCTCTCAACCACAAATTTCCATATCTCCAACAGAAACTTGCACACACCCCCAAACAACACCATCCATAACAGCATCCCTTCCTAAGACCTTTAGAGATGTTGTTTCTCTGGAACACCCACTTACCATATCCTTAAAACAACCAACACAAATCAAGCCACATCTACCATACTCCACTACCCCACCACCACCAGTAACCCTAGGGGATGGTCTTTTCCTACCAGTTTCAAAGGAGAAGTATGAGGAAATCTCCAAGCCATGGCTAGAATCGGTGATTGTAAAAGTAATAGGTAAATCCTTTGAAAAACAATTTTTCCGTAAGGAAATGATGAGAATATGGAGCATACAGTCAAAATTGGAACTTCTGGCCCTAGGGAAGGGTTTCTATGCAGTTCACGGGCTACCAGCAGAAGCTAGAACTAATGTTCTGGCAAATGGTCCATGGTTCATTATGGGAGCCTTACTGTGGACAAGAAACTGGGAACCATCCTTTAGACCGTCCATGGCCAACGTTGATATGGGACCAGTTTGGGTCACCCTACCAGAACTCCCCCTAGAATTCTACTCAAAAGAGATGCTGGAAGGAATTGGCCAACAACTGGGCACACTGGTTAAGGTGGATACACATTCTCTTAGGGGGGAAGCGAGGAAATTTGCGAGCCTTTCCGTGCTTGTACCAAAGGGAACACCACCAGCAAAGGGAATTTGGCTAGGAAGAACTTACCAACCCTTTGTCTACTCAACAGGCATCTGGTTCTGTAAGGGGTGCAACGCTTTTGGTCATGCAAATGACTCGTGCTCAAAAAATAAAAATGGCAACACCCAAACACTTGAAAAAGGAGATGGAAACATGGCCAAACAGAGGTGGACCAGTGAAGAAGACGAAACGTGGAAAATGATTAGTAGAAAAGGAAGGAAGATTAATGATAATCACGTCATTAGTAGGGGGGGCCAACCCACTAACCAACAAAGGTGGACCCCAAAAAAGAACAAGGAGCCGTCGTTTGCAGAGGAAAAAACTTATGGGGAACCCTCAAAAATTTCGGAAAGTGTGAGAACAGAAGAAGTATTCATGGAACACACCTCCAATCCTTTCTCTGCTCTAGAATCCCTTGAATCTAGGGAAATAGAAGATGAAGAACTGATGGAAAACCCATCAACCACTATACCCTTGCCACGCAACACTCAAACTCCCTCGAAACCCAACACTCAATCTGTAACCACCCTACCCTTCATCCAAACCCTTACTCTACCCCGTAATGATGGCACGACACGAAACCCAAACACAAACCATAGCCAAATTCAAATAACTTCCACTTCCCAACACAATACCCAAAACACAAACATCAGCCATGACCCCTCCAAAAACACTATCACCTCAATCCTCAACAGGAAGCTCATCACCCACCACCTCGACAGCCTCACCTCCATTAATGGAGTCGGAACCACCCATTCTCCTCCGCTGCCCCTCGCTCCCCCTAAAACCAGAAATAAATCTCCACAACACCTTTTATCTCCTACCCTGCCAATTCCACCTTCAAGAACTATCACTACAAGAAGTCAAGCAAGTCATTCTCAACCCGAAATCAGCTCCACCAGAGGTGGACGATCTTTTAATGTTCACGGGGGGAGAAGACTTCGAAATAGCCCACCTACCTCAATTTTACAACGGAGATCACCTTCCGCCGGTGATGGCCGTCTTCATGGAATGGCTTCTCAAGAAAGAGGTCGGAGTCGAACAAGAGGAAATCGGTCTCCTTCACAACCTGGGCCCATGGCTCGACCCACCCCCCCTTCTCCCGAAGTGGAGACAATTTGCCCAACTCAGGGATGCTCCGATCAGAGTGAAAGCCACATGCAACACAAACGCTTTGATGGCCATGTCGATCCTTCCAAAGCTCAAACAACTCTCAATTCGGGTGAACTGGGAAGAGGTAAGAGGAAAAAGAAACCTAAGGGTCACAAAGATCCATGCAATTCCTCAGAGGGAGAAGTGGGTGTGCCCCATCACTCACGAAGAGATCGACCCGAGGTGGGAAGCCCAAACGGCAAAGGTCAAGGCGATGAAACGCCAACCTAAATTACCTTATAATATGTCAATTATCTACTGGAATGCTAGGGGAATTGGTAGGAAGTCTTTCAACCCCAACTTCCGTCATCTATTAACTACTCACAAGCCTGATATGGTTATCATCTCTGAAACGCAAGCTGGTCGAGCCAAAACCGCTAGGATAGTTGCTAACCTCCCCTTTGACTCTTGGTACTTGGTCGAGCCGGTGGGAGTTGCTGGAGGCATTCTTCTGATGTGGAGGACGGACCGCATCAACGTCCACATCATCAATGAGAATCGCCAAGGAGTACATGGC

Coding sequence (CDS)

ATGAAATTCCCTCCTTTACCAAATTTCATTCCCCGCCTTTTGTTTCTCGCAGCCTGCTTCCTTCTCGTTGGTTGCTGCCCTAACACCACTGTTTCTTTCCCAAGTCCCAACAACGTCCACCCCAAAAGCACCACCGCGTCATGGCTGCCATATCCCCCCATCCGCGTTTCTCCCCCCCTTGCGCGACTCTCCTGCGTTTCTGGAAGCCGTGTCGCCTACTACTGGAAGCTTCCCCCCGTGTTTAATTCTCCGACTCGCCCACTGTTGGAAACCGCCTCATCGCCTCTCCTGCGTGCACTTCCGCCGTCGCTGGCTCTCCTCCCGTTGGCTACCCTAGGGAAATATCATGATGCTGCACAGAAATACTTGCGTGTCTTGGCCTGCGATGAAAAGAATGTCAAGGCCTTATACCTTAGGGGCCAAGCATGCAAAGAATTAGGTCAATTAGAGGCACTTGAAGTTACCCCTGGCGATGACACAATTGCTGAAGTTTTAAGGGAGGCTAAAGAAAGTCTAGGAAAAGGAGATGTCACGCGAACTTCAACAGATCATTCCCAGCTCTTTGGGTTCATCAAGTGGTAG

Protein sequence

MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPLARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLGKYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLEALEVTPGDDTIAEVLREAKESLGKGDVTRTSTDHSQLFGFIKW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo21873	Spo21873	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo21873.1	Spo21873.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21873.1.exon.1	Spo21873.1.exon.1	exon
Spo21873.1.exon.2	Spo21873.1.exon.2	exon
Spo21873.1.exon.3	Spo21873.1.exon.3	exon
Spo21873.1.exon.4	Spo21873.1.exon.4	exon
Spo21873.1.exon.5	Spo21873.1.exon.5	exon
Spo21873.1.exon.6	Spo21873.1.exon.6	exon
Spo21873.1.exon.7	Spo21873.1.exon.7	exon
Spo21873.1.exon.8	Spo21873.1.exon.8	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21873.1.CDS.1	Spo21873.1.CDS.1	CDS
Spo21873.1.CDS.2	Spo21873.1.CDS.2	CDS
Spo21873.1.CDS.3	Spo21873.1.CDS.3	CDS
Spo21873.1.CDS.4	Spo21873.1.CDS.4	CDS
Spo21873.1.CDS.5	Spo21873.1.CDS.5	CDS
Spo21873.1.CDS.6	Spo21873.1.CDS.6	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo21873.1.utr3p.1	Spo21873.1.utr3p.1	three_prime_UTR
Spo21873.1.utr3p.2	Spo21873.1.utr3p.2	three_prime_UTR
Spo21873.1.utr3p.3	Spo21873.1.utr3p.3	three_prime_UTR

Homology

[Close]

BLAST of Spo21873.1 vs. NCBI nr
Match: gi|902209091|gb|KNA16094.1| (hypothetical protein SOVF_092310 [Spinacia oleracea])

HSP 1 Score: 233.8 bits (595), Expect = 2.500e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1

		  
Query: 1   MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPL 60
           MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPL
Sbjct: 1   MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPL 60

Query: 61  ARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLG 114
           ARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLG
Sbjct: 61  ARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLG 113

[Close]

BLAST of Spo21873.1 vs. NCBI nr
Match: gi|902238205|gb|KNA25078.1| (hypothetical protein SOVF_009830 [Spinacia oleracea])

HSP 1 Score: 98.6 bits (244), Expect = 1.300e-17
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           ++HD  ++   VLA DEKNVKALY RGQA KELGQLE        ALEVTP DDTIAEVL
Sbjct: 161 QFHDCVKEGSEVLAYDEKNVKALYRRGQAYKELGQLENAVSDLAKALEVTPDDDTIAEVL 220

Query: 174 REAKESLGKGDVTRTST 183
           REAKESLGKG VTRTST
Sbjct: 221 REAKESLGKGGVTRTST 237

[Close]

BLAST of Spo21873.1 vs. NCBI nr
Match: gi|731348419|ref|XP_010685477.1| (PREDICTED: outer envelope protein 61 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.7 bits (208), Expect = 1.900e-13
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           ++HD   +   VL  DEKNVKALY RGQA KELGQ+E        A EV+P DDTIAEVL
Sbjct: 161 QFHDCVNEGSEVLVYDEKNVKALYRRGQAYKELGQVENAVSDLRKAHEVSPDDDTIAEVL 220

Query: 174 REAKESLGKGDVTRTST 183
           REA+E LGK  +TRTST
Sbjct: 221 REAEECLGKDGITRTST 237

[Close]

BLAST of Spo21873.1 vs. NCBI nr
Match: gi|590586127|ref|XP_007015618.1| (Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 1.000e-11
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 113 GKYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEV 172
           GK++DA+QKYL VL+ D KNVKALY RGQA KELGQLE        A EV+P D+TIA+V
Sbjct: 117 GKFNDASQKYLLVLSYDAKNVKALYRRGQAYKELGQLEDAVSDLSKAHEVSPDDETIADV 176

Query: 173 LREAKESLGK 175
           LR+A+E L +
Sbjct: 177 LRDAEERLAR 186

[Close]

BLAST of Spo21873.1 vs. NCBI nr
Match: gi|1009113436|ref|XP_015873144.1| (PREDICTED: outer envelope protein 61 [Ziziphus jujuba])

HSP 1 Score: 72.4 bits (176), Expect = 9.700e-10
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           +Y +  ++   VL  D KNVKALY RGQA KELGQLE        ALEVTP D+TIA+VL
Sbjct: 159 QYDECIKEGSEVLEHDAKNVKALYRRGQAYKELGQLEDAVSDLSKALEVTPDDETIADVL 218

Query: 174 REAKESLGKGDVT 179
           R+AKE LGK  V+
Sbjct: 219 RDAKERLGKQGVS 231

[Close]

BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAR4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_092310 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.800e-58
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 1

		  
Query: 1   MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPL 60
           MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPL
Sbjct: 1   MKFPPLPNFIPRLLFLAACFLLVGCCPNTTVSFPSPNNVHPKSTTASWLPYPPIRVSPPL 60

Query: 61  ARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLG 114
           ARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLG
Sbjct: 61  ARLSCVSGSRVAYYWKLPPVFNSPTRPLLETASSPLLRALPPSLALLPLATLG 113

[Close]

BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S030_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009830 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.800e-18
Identity = 55/77 (71.43%), Postives = 59/77 (76.62%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           ++HD  ++   VLA DEKNVKALY RGQA KELGQLE        ALEVTP DDTIAEVL
Sbjct: 161 QFHDCVKEGSEVLAYDEKNVKALYRRGQAYKELGQLENAVSDLAKALEVTPDDDTIAEVL 220

Query: 174 REAKESLGKGDVTRTST 183
           REAKESLGKG VTRTST
Sbjct: 221 REAKESLGKGGVTRTST 237

[Close]

BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTV4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171430 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.300e-13
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           ++HD   +   VL  DEKNVKALY RGQA KELGQ+E        A EV+P DDTIAEVL
Sbjct: 161 QFHDCVNEGSEVLVYDEKNVKALYRRGQAYKELGQVENAVSDLRKAHEVSPDDDTIAEVL 220

Query: 174 REAKESLGKGDVTRTST 183
           REA+E LGK  +TRTST
Sbjct: 221 REAEECLGKDGITRTST 237

[Close]

BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
Match: A0A061GVQ6_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_041189 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.200e-12
Identity = 43/70 (61.43%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 113 GKYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEV 172
           GK++DA+QKYL VL+ D KNVKALY RGQA KELGQLE        A EV+P D+TIA+V
Sbjct: 117 GKFNDASQKYLLVLSYDAKNVKALYRRGQAYKELGQLEDAVSDLSKAHEVSPDDETIADV 176

Query: 173 LREAKESLGK 175
           LR+A+E L +
Sbjct: 177 LRDAEERLAR 186

[Close]

BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IPR0_SOLCH (Putative outer envelope protein 61, chloroplastic-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.500e-9
Identity = 39/70 (55.71%), Postives = 47/70 (67.14%), Query Frame = 1

		  
Query: 113 GKYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEV 172
           G+Y D  ++   VL  D+KN+KALY RGQA KELGQLE        ALEV+P DDTIA+V
Sbjct: 8   GQYDDCIKEGSEVLTYDDKNIKALYRRGQAYKELGQLEDAVSDLSKALEVSPDDDTIADV 67

Query: 173 LREAKESLGK 175
           LR  +E L K
Sbjct: 68  LRGVQERLVK 77

[Close]

BLAST of Spo21873.1 vs. ExPASy Swiss-Prot
Match: OEP61_ARATH (Outer envelope protein 61 OS=Arabidopsis thaliana GN=OEP61 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.900e-6
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           ++ +  ++   VL  D +NVKALY RGQA ++LG  E        A EV+P D+TIA+VL
Sbjct: 161 QHEECIKEGSEVLGYDARNVKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVL 220

Query: 174 REAKESL---GKGDVTR 180
           R+ KE L   G G  +R
Sbjct: 221 RDVKERLAVEGPGKASR 237

[Close]

BLAST of Spo21873.1 vs. TAIR (Arabidopsis)
Match: AT5G21990.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 1.600e-7
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1

		  
Query: 114 KYHDAAQKYLRVLACDEKNVKALYLRGQACKELGQLE--------ALEVTPGDDTIAEVL 173
           ++ +  ++   VL  D +NVKALY RGQA ++LG  E        A EV+P D+TIA+VL
Sbjct: 161 QHEECIKEGSEVLGYDARNVKALYRRGQAYRDLGLFEDAVSDLSKAHEVSPEDETIADVL 220

Query: 174 REAKESL---GKGDVTR 180
           R+ KE L   G G  +R
Sbjct: 221 RDVKERLAVEGPGKASR 237

The following BLAST results are available for this feature:

BLAST of Spo21873.1 vs. NCBI nr
BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
BLAST of Spo21873.1 vs. ExPASy Swiss-Prot
BLAST of Spo21873.1 vs. TAIR (Arabidopsis)

BLAST of Spo21873.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902209091\|gb\|KNA16094.1\|	2.5e-58	100.	hypothetical protein SOVF_0923...	[more]
gi\|902238205\|gb\|KNA25078.1\|	1.3e-17	71.4	hypothetical protein SOVF_0098...	[more]
gi\|731348419\|ref\|XP_010685477.1\|	1.9e-13	61.0	PREDICTED: outer envelope prot...	[more]
gi\|590586127\|ref\|XP_007015618.1\|	1.0e-11	61.4	Tetratricopeptide repeat-like ...	[more]
gi\|1009113436\|ref\|XP_015873144.1\|	9.7e-10	57.5	PREDICTED: outer envelope prot...	[more]

BLAST of Spo21873.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RAR4_SPIOL	1.8e-58	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9S030_SPIOL	8.8e-18	71.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8BTV4_BETVU	1.3e-13	61.0	Uncharacterized protein OS=Bet...	[more]
A0A061GVQ6_THECC	7.2e-12	61.4	Tetratricopeptide repeat-like ...	[more]
A0A0V0IPR0_SOLCH	7.5e-9	55.7	Putative outer envelope protei...	[more]

BLAST of Spo21873.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
OEP61_ARATH	2.9e-6	42.8	Outer envelope protein 61 OS=A...	[more]

BLAST of Spo21873.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G21990.1	1.6e-7	42.8	Tetratricopeptide repeat (TPR)...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 110..174 score: 4.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 111..174 score: 2.4
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..25 score:

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0044446	intracellular organelle part
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0009536	plastid
molecular_function	GO:0005515	protein binding