Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCTACCAGCAACCAATCAGAGGAAGATGCATCTACCGTACATGAGAATTCGAAGTAAGCATTTCAGTGGTTGCACTAAGCTTCAAAAAAGTATTAGCATTTCAAATCTAATAGTTGAAATGCTTGATCAGAGTCCAACTTATACAAGTTCTCGAGACACGTAAAACTATGCTACAAAAAGAGCAAGGCATGGCTTTTGCACGTGCTGTTGCTGCTAGCTTTGACATTGATAACATAGACGATCTGCTTGCTTTTGCTGAATGTTTTGGGGCTTCACGTATGATGTAAGCTGCATTCTTTCAAACAGTTCTAGTATGCTGTATGTAGGTTAAGCATATTTCTTTTTTCGAATGACTTTTGTGGCACACTGGCACTTTGTATTTGAAGGGAACTGTGTTTCTCATTAATTATTTTCATGTCATAGGGATGCGTGCAAAAAGTTTTTGGACTTATGGAAGGCAAAGCATGAAAGTGGTCAGTGGGTTGAGGTTGAAGCAGCCGATGCAGTGTCTTGCCGGTCAGACATGCCTAGTACAAATGCAGCAGGTATTGTGTTTCTGGGCCCAAGCGAACAGAAGGAATTCAAGGAATCAAGCCCCCAGGGTGAGATTGGTTCTGAAAAGAAGGGGATGTCATGTGCGCCTAGTCCAGGTGCCACTCTAACATTATGA CCTACCAGCAACCAATCAGAGGAAGATGCATCTACCGTACATGAGAATTCGAAAGTCCAACTTATACAAGTTCTCGAGACACGTAAAACTATGCTACAAAAAGAGCAAGGCATGGCTTTTGCACGTGCTGTTGCTGCTAGCTTTGACATTGATAACATAGACGATCTGCTTGCTTTTGCTGAATGTTTTGGGGCTTCACGTATGATGGATGCGTGCAAAAAGTTTTTGGACTTATGGAAGGCAAAGCATGAAAGTGGTCAGTGGGTTGAGGTTGAAGCAGCCGATGCAGTGTCTTGCCGGTCAGACATGCCTAGTACAAATGCAGCAGGTATTGTGTTTCTGGGCCCAAGCGAACAGAAGGAATTCAAGGAATCAAGCCCCCAGGGTGAGATTGGTTCTGAAAAGAAGGGGATGTCATGTGCGCCTAGTCCAGGTGCCACTCTAACATTATGA CCTACCAGCAACCAATCAGAGGAAGATGCATCTACCGTACATGAGAATTCGAAAGTCCAACTTATACAAGTTCTCGAGACACGTAAAACTATGCTACAAAAAGAGCAAGGCATGGCTTTTGCACGTGCTGTTGCTGCTAGCTTTGACATTGATAACATAGACGATCTGCTTGCTTTTGCTGAATGTTTTGGGGCTTCACGTATGATGGATGCGTGCAAAAAGTTTTTGGACTTATGGAAGGCAAAGCATGAAAGTGGTCAGTGGGTTGAGGTTGAAGCAGCCGATGCAGTGTCTTGCCGGTCAGACATGCCTAGTACAAATGCAGCAGGTATTGTGTTTCTGGGCCCAAGCGAACAGAAGGAATTCAAGGAATCAAGCCCCCAGGGTGAGATTGGTTCTGAAAAGAAGGGGATGTCATGTGCGCCTAGTCCAGGTGCCACTCTAACATTATGA PTSNQSEEDASTVHENSKVQLIQVLETRKTMLQKEQGMAFARAVAASFDIDNIDDLLAFAECFGASRMMDACKKFLDLWKAKHESGQWVEVEAADAVSCRSDMPSTNAAGIVFLGPSEQKEFKESSPQGEIGSEKKGMSCAPSPGATLTL Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo22061.1 vs. NCBI nr
Match: gi|902195803|gb|KNA12956.1| (hypothetical protein SOVF_121570 [Spinacia oleracea]) HSP 1 Score: 283.1 bits (723), Expect = 2.800e-73 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Spo22061.1 vs. NCBI nr
Match: gi|731320805|ref|XP_010671008.1| (PREDICTED: uncharacterized protein LOC104887920 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 225.3 bits (573), Expect = 7.000e-56 Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 1
BLAST of Spo22061.1 vs. NCBI nr
Match: gi|731320803|ref|XP_010671007.1| (PREDICTED: uncharacterized protein LOC104887920 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 225.3 bits (573), Expect = 7.000e-56 Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 1
BLAST of Spo22061.1 vs. NCBI nr
Match: gi|147853133|emb|CAN80688.1| (hypothetical protein VITISV_021551 [Vitis vinifera]) HSP 1 Score: 162.2 bits (409), Expect = 7.300e-37 Identity = 87/141 (61.70%), Postives = 111/141 (78.72%), Query Frame = 1
BLAST of Spo22061.1 vs. NCBI nr
Match: gi|296083674|emb|CBI23663.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 161.0 bits (406), Expect = 1.600e-36 Identity = 86/141 (60.99%), Postives = 111/141 (78.72%), Query Frame = 1
BLAST of Spo22061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0B1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_121570 PE=4 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 2.000e-73 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
BLAST of Spo22061.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWX7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048820 PE=4 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 4.900e-56 Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 1
BLAST of Spo22061.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS66_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g048820 PE=4 SV=1) HSP 1 Score: 225.3 bits (573), Expect = 4.900e-56 Identity = 117/143 (81.82%), Postives = 129/143 (90.21%), Query Frame = 1
BLAST of Spo22061.1 vs. UniProtKB/TrEMBL
Match: A5B1U9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021551 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 5.100e-37 Identity = 87/141 (61.70%), Postives = 111/141 (78.72%), Query Frame = 1
BLAST of Spo22061.1 vs. UniProtKB/TrEMBL
Match: F6H8R3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0049g01280 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 1.100e-36 Identity = 86/141 (60.99%), Postives = 111/141 (78.72%), Query Frame = 1
BLAST of Spo22061.1 vs. TAIR (Arabidopsis)
Match: AT5G43310.1 (COP1-interacting protein-related) HSP 1 Score: 124.8 bits (312), Expect = 4.500e-29 Identity = 59/109 (54.13%), Postives = 84/109 (77.06%), Query Frame = 1
BLAST of Spo22061.1 vs. TAIR (Arabidopsis)
Match: AT1G61100.1 (disease resistance protein (TIR class), putative) HSP 1 Score: 97.4 bits (241), Expect = 7.700e-21 Identity = 50/113 (44.25%), Postives = 75/113 (66.37%), Query Frame = 1
BLAST of Spo22061.1 vs. TAIR (Arabidopsis)
Match: AT4G27430.1 (COP1-interacting protein 7) HSP 1 Score: 95.1 bits (235), Expect = 3.800e-20 Identity = 60/154 (38.96%), Postives = 82/154 (53.25%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22061.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22061.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22061.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo22061.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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