Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAGATGTGTTTTTTTTCAATTTATTTGTGTGTTTTACATGAACGACACCGTAAAGTCGCGTGTAAACCTCACGTTATCCACACACTCTTTCTCTCTCCTAACCGTCGATGGCCGGAGCAACTGGTAGTTCTCTCTCCCGGTCACGCTTTACCATTCCTTACAAATCCATCGCCGGCAAAATTCTCCCGCTAAAATCATCCTCTGCCTCCGTCTTCAGCCACCATTTTCACGCCAGAGGCGGACTTTCTACATGCGCTAGCGCCGCCTTTCAACCACCGGCAAGTCCGGTGACTTCCGAGGGCCCTTCTTGTATTTTTGTTGGTCCTGTTGAAACCGCCAGCCAAGAAACCCTTGAGGCTCTTTACCGTCAGGTATCTCGTTCTCTCTCCTCGTCTAGCTTCTTCATCAGTTCATCAGTGTTGGAAATGTTAAATGCGTTGTTTGATTTGAGTCGATTGATTTTGATTTCGTTTAAATAAATAGGCGAAAGATGCGTATTACAGTGGACAACCGTTGATATTAGATGACATGTTTGATAGGGTTGAGGTGAGTTTATTGAGATGGCCTTTATTTTAATTAGGAACAAATGTGATTGATTATGATGATGATAATAAGGATGTGGTGTTGATGGTGGAACAGTTGAAATTGAGGTGGTATGGATCGAAATACGTGATGAAATATCCAAGGTGTAGTTTACGCCGCCAATCTACCTATGCTGATGCTCAGGTAAACTCATTCGCAGTTAATTGTTGGTGTACTTGTGTTTAATGTTACTCTTATTGGTTTAATTAGATGTGTTTCTTGTATTTGATTCTGAAGATTAGAACCGGAATCTAATAGACCTGTCCAAAATTGACCCCGCCTGGGAATGACTTGAATTAGCTTGAAATATTCAAGGTTTTGGATAAGATTGTTCAATCCGGAATACATAAAGAAAATAATGGTGAAAGAGGTTACCGAGTTTTGACCTACCTAATCTTGTAATTCCGAGCTGAAAACAATGTGATTAATCTGCGTGACAGGTCCAATTTTGAACTGTTGTCTGAAATTGGGCTTGGCACGAGAAAATGGGAGGAGAGAGAATTTAAAATTCAGTTGGCCTGTTCTCAGTTTACGGTGGAAAAAATAGTTGCTTCACTGAGGAATTTGAATTTGAAGAATTTAATGACAAGAACAACAAGGTGGTATCTTATGCTTTTCTGGCTGAAAGAGGATTCAGTTGGAATACCTATTTTGATGTATTAAGCATCAGAATGCTTAGTGAAATCAACTCTTTCACTTTCTTAACTTCTGATGACTAATTACTTCGAGTAACAAGTTACCTAAGCAATGTTCTCTGTGAGTCGAGGATAATAACTCAGAATGAGGGGTTTCGCCCGCCATAAACAGTGTGTAATAATATAAACCGATATAGTGAGATACTCCATCAGGGGTTAATGTTGAAAGCCCCTTCAGATTTTCTTGTGCTTCTTTAGGTCTTTGAGCACTTTTTCAAGGAAGGTTATTGATTTGTGTTTTTCATTATTAGTCCGGAAGTTTTGGGATATTTTAAGGATGTAGACTGATGATACTATACGTACTCATTCTCAAGGAACTCTTGTTTTTATGGTACAAACTATCTAGATACTGGATATGTGTGCATCTTGATACTACGAGTATGAAGTTGTAAACATTAATGGGAAACTAGACTGAAAGCCTAAGAGGGGGAGGGGGATGCAAGACAAGGCAAATTGTTGATTTATGATTTTTTGAAGGATGTGGTGTGTAGATGTGTTGGGGGAACTAGAAAGACTGGTGTCCAGTAGTCAAGATCCCTGATAATTACTGTGCACAAACCTTTTACCACAGCCACGTTTCCACATTGGTGGGATTGGCTAGATTCCACACATGCTTAAGCACTTTAAATGACATACTTCACTTTACTTTCTACAAGATCCCCACCCCCCAAAAAAAATGCAAGAGAAGAAAAGAATGACCAAAGGAAAACGTTGGTGATTTGTAACTAAAGCTTCTGTTTGTCTTTTGTTGATGCCAATTTTTCCTAGTTTAGAAATTCATCATAATTTAACTGTATTGTTCACTATATTTTTGTTGTTTAAATAACATCCATGTTGACTAGGAAGGATATTTGTATATTAGTTGAAGATGATGACGTGTGTGTAGGGCAGGAAGACCCTTCGCAGGTGTTTGCTTTGGCGAGCGTCTGGTTTCTGATACTTGCATTTGGCGGTTCAGTATGTCTTGTGCCCATGTTGTACACCATCAATTTAGCTTATCAGGATATTCTTAATTCAGAAGCAGTCTACAGCAGCCAACCAGCACTGCTGGAGGTTCTTGGCATGTTAAACACTGTGCTGTTCATTCTTCTGGGTTCTGTAATTGGCTGCCCAATTGCATCAGCTTCTGGTAATGTTGCCATCCATCCATCCTTTTCATTTTCATTTCCATTGCTTTACTCTATTTGTTGATCTAATTCAGGCTGGCATAATAGCAGTGTGCTCTAATGACCTTCAGTTCATAGTATTTAGTGGCCATTTAATAGTAGATCCTTAACAGTAAATACAGAAACATTTCACCATGTTATTCAAGATTATTTCAAGTTTTTGTTCCTTGTGAAATGAAGTGGCTAGTAGTTATTCAAACTTTTAAAAATTAAGCATCTTGGATGGAAAGTTAAAAAAGTATAAAAATAAAAACTTGCCATCATTATCCAAGCTTGGGTAACAGATAAAAGGGTAGATGTGGTTTTGCATATTGCCTTTTTATGACAGTGAAGTGATACTGATATTATCATCTCTTGTCTAATGCCTATGTTCATGGTTCAGCTCGAGCTCTACAGGGCCTATGGCGGAATGATCTAGTGGCATTGAAAGGAGCCTGTCCAAATTGTGGAGAGGAGGTTAGCTTTACTGAATTTGCACTTCACCTCTAGCAGCTCTTTTTGTCAAATGTGCCCTCGTTGTAATCTATGAATCAGAGTGATATGTACTTTGTAGTATCTTTCTCACATACATCATTCGCAAAATTTTGCAGGTCTTTGCATTTCTGAGGTCAGATCAAAGCAGTAGCTCTTCCCATAGAGCTGATTGTCACGTTTGCGAATGCCGGATTGAGTTTCGCACCAAGGCTGAGGTAAATTCAGTTGCCTTTAGGTTCAGTGTGGGGAATGGATGACATGATTTGGTATAGTGGCTACAAAAAACTCATGACATCCTCATATAATGTCAACATACAACATAAAATTATGAGGTTTATAGATTATTGGTTTTGGCATATGATGTTGTATATTGTGTTGAAATGCATAACATTTCTTCTCATCTCACTTTGTCATTTTGCAGCAATCCATATCAAAACTTGGAAGACGATGGGTTCATGGCCGCGTTTACCTGATATCTGAGAGACGAAGTCGCCGGCGTTAAAACATTGACATAAAAACTGGGGCAAGAGAGTTAAATGTGATTTGAGTTCATGTACAGTAGGATGATTCTTTTGAAGTCTAGCACTGGCTGGTACATAAATCAAAGTATACAGCAAACAAAATTGATGCAGTTGGAGATTAGTTAGAGCATATTGTTGCCTTCCTGCCTAGCTAAGTATCGTGTAAGAAATATTTTATTTCTAGTACATAGTGTTTTTGTGTAATACGCTGTCGCCCGCACAGACAAATGACGCAATTGTAGTTATGGCGTTCAAGTCTAGTCAATTAGCTACTCCAACTGACATGTTGAAAGACAATACATCAAATACTATTATTTGGTCTTCACAAATTCTTATTTAAAGTGGTTCGATATTGATTAATCCCTTTTAAGATGTTTATCCGTCAATTTTTTTCCATAATAAAGTTACAAAAATTGGATATAAAGTTACAGAAATTGGATATAAATACCCCA TATAGATGTGTTTTTTTTCAATTTATTTGTGTGTTTTACATGAACGACACCGTAAAGTCGCGTGTAAACCTCACGTTATCCACACACTCTTTCTCTCTCCTAACCGTCGATGGCCGGAGCAACTGGTAGTTCTCTCTCCCGGTCACGCTTTACCATTCCTTACAAATCCATCGCCGGCAAAATTCTCCCGCTAAAATCATCCTCTGCCTCCGTCTTCAGCCACCATTTTCACGCCAGAGGCGGACTTTCTACATGCGCTAGCGCCGCCTTTCAACCACCGGCAAGTCCGGTGACTTCCGAGGGCCCTTCTTGTATTTTTGTTGGTCCTGTTGAAACCGCCAGCCAAGAAACCCTTGAGGCTCTTTACCGTCAGGCGAAAGATGCGTATTACAGTGGACAACCGTTGATATTAGATGACATGTTTGATAGGGTTGAGTTGAAATTGAGGTGGTATGGATCGAAATACGTGATGAAATATCCAAGGTGTAGTTTACGCCGCCAATCTACCTATGCTGATGCTCAGGAAGACCCTTCGCAGGTGTTTGCTTTGGCGAGCGTCTGGTTTCTGATACTTGCATTTGGCGGTTCAGTATGTCTTGTGCCCATGTTGTACACCATCAATTTAGCTTATCAGGATATTCTTAATTCAGAAGCAGTCTACAGCAGCCAACCAGCACTGCTGGAGGTTCTTGGCATGTTAAACACTGTGCTGTTCATTCTTCTGGGTTCTGTAATTGGCTGCCCAATTGCATCAGCTTCTGCTCGAGCTCTACAGGGCCTATGGCGGAATGATCTAGTGGCATTGAAAGGAGCCTGTCCAAATTGTGGAGAGGAGGTCTTTGCATTTCTGAGGTCAGATCAAAGCAGTAGCTCTTCCCATAGAGCTGATTGTCACGTTTGCGAATGCCGGATTGAGTTTCGCACCAAGGCTGAGCAATCCATATCAAAACTTGGAAGACGATGGGTTCATGGCCGCGTTTACCTGATATCTGAGAGACGAAGTCGCCGGCGTTAAAACATTGACATAAAAACTGGGGCAAGAGAGTTAAATGTGATTTGAGTTCATGTACAGTAGGATGATTCTTTTGAAGTCTAGCACTGGCTGGTACATAAATCAAAGTATACAGCAAACAAAATTGATGCAGTTGGAGATTAGTTAGAGCATATTGTTGCCTTCCTGCCTAGCTAAGTATCGTGTAAGAAATATTTTATTTCTAGTACATAGTGTTTTTGTGTAATACGCTGTCGCCCGCACAGACAAATGACGCAATTGTAGTTATGGCGTTCAAGTCTAGTCAATTAGCTACTCCAACTGACATGTTGAAAGACAATACATCAAATACTATTATTTGGTCTTCACAAATTCTTATTTAAAGTGGTTCGATATTGATTAATCCCTTTTAAGATGTTTATCCGTCAATTTTTTTCCATAATAAAGTTACAAAAATTGGATATAAAGTTACAGAAATTGGATATAAATACCCCA ATGGCCGGAGCAACTGGTAGTTCTCTCTCCCGGTCACGCTTTACCATTCCTTACAAATCCATCGCCGGCAAAATTCTCCCGCTAAAATCATCCTCTGCCTCCGTCTTCAGCCACCATTTTCACGCCAGAGGCGGACTTTCTACATGCGCTAGCGCCGCCTTTCAACCACCGGCAAGTCCGGTGACTTCCGAGGGCCCTTCTTGTATTTTTGTTGGTCCTGTTGAAACCGCCAGCCAAGAAACCCTTGAGGCTCTTTACCGTCAGGCGAAAGATGCGTATTACAGTGGACAACCGTTGATATTAGATGACATGTTTGATAGGGTTGAGTTGAAATTGAGGTGGTATGGATCGAAATACGTGATGAAATATCCAAGGTGTAGTTTACGCCGCCAATCTACCTATGCTGATGCTCAGGAAGACCCTTCGCAGGTGTTTGCTTTGGCGAGCGTCTGGTTTCTGATACTTGCATTTGGCGGTTCAGTATGTCTTGTGCCCATGTTGTACACCATCAATTTAGCTTATCAGGATATTCTTAATTCAGAAGCAGTCTACAGCAGCCAACCAGCACTGCTGGAGGTTCTTGGCATGTTAAACACTGTGCTGTTCATTCTTCTGGGTTCTGTAATTGGCTGCCCAATTGCATCAGCTTCTGCTCGAGCTCTACAGGGCCTATGGCGGAATGATCTAGTGGCATTGAAAGGAGCCTGTCCAAATTGTGGAGAGGAGGTCTTTGCATTTCTGAGGTCAGATCAAAGCAGTAGCTCTTCCCATAGAGCTGATTGTCACGTTTGCGAATGCCGGATTGAGTTTCGCACCAAGGCTGAGCAATCCATATCAAAACTTGGAAGACGATGGGTTCATGGCCGCGTTTACCTGATATCTGAGAGACGAAGTCGCCGGCGTTAA MAGATGSSLSRSRFTIPYKSIAGKILPLKSSSASVFSHHFHARGGLSTCASAAFQPPASPVTSEGPSCIFVGPVETASQETLEALYRQAKDAYYSGQPLILDDMFDRVELKLRWYGSKYVMKYPRCSLRRQSTYADAQEDPSQVFALASVWFLILAFGGSVCLVPMLYTINLAYQDILNSEAVYSSQPALLEVLGMLNTVLFILLGSVIGCPIASASARALQGLWRNDLVALKGACPNCGEEVFAFLRSDQSSSSSHRADCHVCECRIEFRTKAEQSISKLGRRWVHGRVYLISERRSRRR Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo22157.1 vs. NCBI nr
Match: gi|902156235|gb|KNA05997.1| (hypothetical protein SOVF_185130 [Spinacia oleracea]) HSP 1 Score: 593.2 bits (1528), Expect = 2.600e-166 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1
BLAST of Spo22157.1 vs. NCBI nr
Match: gi|731348935|ref|XP_010685740.1| (PREDICTED: PGR5-like protein 1B, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 448.7 bits (1153), Expect = 7.800e-123 Identity = 229/300 (76.33%), Postives = 252/300 (84.00%), Query Frame = 1
BLAST of Spo22157.1 vs. NCBI nr
Match: gi|590589236|ref|XP_007016391.1| (Uncharacterized protein isoform 1 [Theobroma cacao]) HSP 1 Score: 362.5 bits (929), Expect = 7.300e-97 Identity = 187/282 (66.31%), Postives = 221/282 (78.37%), Query Frame = 1
BLAST of Spo22157.1 vs. NCBI nr
Match: gi|694441149|ref|XP_009347346.1| (PREDICTED: PGR5-like protein 1B, chloroplastic [Pyrus x bretschneideri]) HSP 1 Score: 361.3 bits (926), Expect = 1.600e-96 Identity = 177/245 (72.24%), Postives = 206/245 (84.08%), Query Frame = 1
BLAST of Spo22157.1 vs. NCBI nr
Match: gi|703137625|ref|XP_010106499.1| (hypothetical protein L484_025257 [Morus notabilis]) HSP 1 Score: 360.5 bits (924), Expect = 2.800e-96 Identity = 171/239 (71.55%), Postives = 203/239 (84.94%), Query Frame = 1
BLAST of Spo22157.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFF4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_185130 PE=4 SV=1) HSP 1 Score: 593.2 bits (1528), Expect = 1.800e-166 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1
BLAST of Spo22157.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZ05_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g173730 PE=4 SV=1) HSP 1 Score: 448.7 bits (1153), Expect = 5.400e-123 Identity = 229/300 (76.33%), Postives = 252/300 (84.00%), Query Frame = 1
BLAST of Spo22157.1 vs. UniProtKB/TrEMBL
Match: A0A061GVX4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_041820 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 5.100e-97 Identity = 187/282 (66.31%), Postives = 221/282 (78.37%), Query Frame = 1
BLAST of Spo22157.1 vs. UniProtKB/TrEMBL
Match: W9RUF4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025257 PE=4 SV=1) HSP 1 Score: 360.5 bits (924), Expect = 1.900e-96 Identity = 171/239 (71.55%), Postives = 203/239 (84.94%), Query Frame = 1
BLAST of Spo22157.1 vs. UniProtKB/TrEMBL
Match: A0A103YMK1_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_009633 PE=4 SV=1) HSP 1 Score: 356.7 bits (914), Expect = 2.800e-95 Identity = 168/236 (71.19%), Postives = 204/236 (86.44%), Query Frame = 1
BLAST of Spo22157.1 vs. ExPASy Swiss-Prot
Match: PGL1B_ARATH (PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 1.200e-9 Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 1
BLAST of Spo22157.1 vs. ExPASy Swiss-Prot
Match: PGL1A_ARATH (PGR5-like protein 1A, chloroplastic OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 2.200e-8 Identity = 51/182 (28.02%), Postives = 86/182 (47.25%), Query Frame = 1
BLAST of Spo22157.1 vs. TAIR (Arabidopsis)
Match: AT5G59400.2 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 321.6 bits (823), Expect = 5.100e-88 Identity = 157/242 (64.88%), Postives = 193/242 (79.75%), Query Frame = 1
BLAST of Spo22157.1 vs. TAIR (Arabidopsis)
Match: AT4G11960.1 (PGR5-like B) HSP 1 Score: 65.5 bits (158), Expect = 6.500e-11 Identity = 53/187 (28.34%), Postives = 89/187 (47.59%), Query Frame = 1
BLAST of Spo22157.1 vs. TAIR (Arabidopsis)
Match: AT4G22890.1 (PGR5-LIKE A) HSP 1 Score: 61.2 bits (147), Expect = 1.200e-9 Identity = 51/182 (28.02%), Postives = 86/182 (47.25%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22157.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22157.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22157.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo22157.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
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