Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAAATGAAAGGGTCTATAGTGATACAGGCCCAACATTATAAAAACGCACAACATTCTCTCTCTTAAAAGCAAACTTTATCTTCAATCAAAACCGAAACCCCAGAAAACCAAAAACAAAAAAGAGCTCACTCCCTTCACTCCTTCCCTCCGCCTCTCATCATCTTCTTCCCAGAGGAGAGAGAAAATCAAAATTTCCTCAGAATCCACCATGACTGTCCCCGTCGTTGAAGAAGAACAGATTCCTATCCCCGTTGAAGAAGAGGTAATTTCATTCTAGATTACCTTTAATTTTCTCTGTAATTTTTGGGTGAATTTTGATTTTTTGTTTATTTTTTCTGAATTACGCAGAAGGAGGAAGTTGTTGTTGAAGACGTTAAGGAGGATGACCATGACGATGACGACGATGAGAATGACGACGAAGATGACGATGACGAGGATGACACTATTCTAGGTTTTTTCCATTTCTTATTTCTCTCATTTTAAATGTTTTTCAATTTCAATTTTTTGGTTTAATATTCTTATTTAGGGTTTATGATTCTTATTTCTCGTTGATTTTTTTTTATAAAATGGTTTATGTTGGATATTTTATGTGACGCATAATTTTCTATTTGCCAGCAACATTTGCAAAACAATTCGTTTTTTTGTGGGAATGCAGTTTATTGGTTATGGTTTGTGGTTGAAAAAAGGGATTGTTGAAGTTGTATTTCTGAGAATTTTGAACGTGAAAATGGTAAATTACTGTAGCTTGAGCGATAAGCTGTTTGGAATTTGTTCTGTTTTAATGTTTGATTCTTATTGAAATGCTGAGCCTTTTATGGGTTTCAGTGAAATTGACCATATTTGTTGACTGGAAGTTGGCTATTCATTCATTTTTTATACTTTGATGACTGAAGAATCGGGGTGAGGTGGGGTTAGGTTTAAGGATTTTTTATTTCAGATAGAATTTGGACCTGAAACTTGAGATTTTATATAGCTTTAGTGACTAGTTAATTATTGTAAGGATTTTGACTATGTTCTATTGTTTGATCGTTATTCGAATACATTTTGTTGTACAAGCTTGAGTGACATTTCTGCATCAAATAGGGTGGAGTCTGTACTTTGTTTGTTTGATGGTTTTGAAGGAATTGTTACTGTTCTGTGTACACTGATGTGAATATTTGGGTTTTTTTTGGGTGTTGAGGGTGGATGAGTTTTATGTACTTTTGATGCTTGAGTGCTAATTTTATTTGTCCTTTGTTTTTCTGTATCCATTTAGCTTCAGCTGATGGTTTAAGGCAGAGCAGGAGTGAGAAGAAGAGTCGCAAAGCAATGTTGAAACTGGGATTGAAACCCGTCACAGGTGTAACCCGCGTCACCATAAAGAGAGCAAAAAACGTAAGAGTTTGTCCTAAATCTCAATACTTTTACATTGATCAAAGTTATTTTTAAACATACTATTAAGGGTCAAGCTGACTTTGGTGTTTCTGAATTACAGATATTGTTTTTCATTTCAAAGCCTGATGTTTTCAAGAGCCCAAACTCGGAGACCTATGTCATATTTGGAGAGGCCAAGATCGAAGACTTGAGCTCTCAGCTGCAGACCCAAGCTGCCCAGCAGTTCAGACTCCCTGACATGTCATCCATGATGGCCAAGTCAGAAGCTTCTGTTGCCACTGCTGCTGCACAAGAGGAGGAAGAAGAGGTCGATGAGACAGGGGTTGAACCTCGTGACATTGATTTGGTTATGACACAAGCTGGGGTTTCAAGGGGCAAAGCTGTCAACGCACTCAAGGCTCATGATGGTGACATTGTTGGTGCTATTATGGAGCTCACTGCTTAGGTCTGTTGATTTCTGGTCCTCGGGAGTTTAATCGTCCATTCTAGCTTTATTATTCTTTTTCCTTTTTTGGGCCGAAGACAAACTTTTTTAGTGATGTGGTGAAGCATTTTTGAACTGCTGCCCATTTCATTTGAATATGGATATGCTTTATGATAACATAAATGGTCTTGTTGCCTCAAATTCGCAGTAATGTCTTATTAATTTGATTCAGGTGCTAGTTCAATCTTTAGATTTTCTACCATGTTTGGCCGATGGTTCAAGTGCATTTAATATTAGGCCTGATCATCTTGAGCCCATCCCGTTGACCCAGCCCG CAAATGAAAGGGTCTATAGTGATACAGGCCCAACATTATAAAAACGCACAACATTCTCTCTCTTAAAAGCAAACTTTATCTTCAATCAAAACCGAAACCCCAGAAAACCAAAAACAAAAAAGAGCTCACTCCCTTCACTCCTTCCCTCCGCCTCTCATCATCTTCTTCCCAGAGGAGAGAGAAAATCAAAATTTCCTCAGAATCCACCATGACTGTCCCCGTCGTTGAAGAAGAACAGATTCCTATCCCCGTTGAAGAAGAGAAGGAGGAAGTTGTTGTTGAAGACGTTAAGGAGGATGACCATGACGATGACGACGATGAGAATGACGACGAAGATGACGATGACGAGGATGACACTATTCTAGCTTCAGCTGATGGTTTAAGGCAGAGCAGGAGTGAGAAGAAGAGTCGCAAAGCAATGTTGAAACTGGGATTGAAACCCGTCACAGGTGTAACCCGCGTCACCATAAAGAGAGCAAAAAACATATTGTTTTTCATTTCAAAGCCTGATGTTTTCAAGAGCCCAAACTCGGAGACCTATGTCATATTTGGAGAGGCCAAGATCGAAGACTTGAGCTCTCAGCTGCAGACCCAAGCTGCCCAGCAGTTCAGACTCCCTGACATGTCATCCATGATGGCCAAGTCAGAAGCTTCTGTTGCCACTGCTGCTGCACAAGAGGAGGAAGAAGAGGTCGATGAGACAGGGGTTGAACCTCGTGACATTGATTTGGTTATGACACAAGCTGGGGTTTCAAGGGGCAAAGCTGTCAACGCACTCAAGGCTCATGATGGTGACATTGTTGGTGCTATTATGGAGCTCACTGCTTAGGTCTGTTGATTTCTGGTCCTCGGGAGTTTAATCGTCCATTCTAGCTTTATTATTCTTTTTCCTTTTTTGGGCCGAAGACAAACTTTTTTAGTGATGTGGTGAAGCATTTTTGAACTGCTGCCCATTTCATTTGAATATGGATATGCTTTATGATAACATAAATGGTCTTGTTGCCTCAAATTCGCAGTAATGTCTTATTAATTTGATTCAGGTGCTAGTTCAATCTTTAGATTTTCTACCATGTTTGGCCGATGGTTCAAGTGCATTTAATATTAGGCCTGATCATCTTGAGCCCATCCCGTTGACCCAGCCCG ATGACTGTCCCCGTCGTTGAAGAAGAACAGATTCCTATCCCCGTTGAAGAAGAGAAGGAGGAAGTTGTTGTTGAAGACGTTAAGGAGGATGACCATGACGATGACGACGATGAGAATGACGACGAAGATGACGATGACGAGGATGACACTATTCTAGCTTCAGCTGATGGTTTAAGGCAGAGCAGGAGTGAGAAGAAGAGTCGCAAAGCAATGTTGAAACTGGGATTGAAACCCGTCACAGGTGTAACCCGCGTCACCATAAAGAGAGCAAAAAACATATTGTTTTTCATTTCAAAGCCTGATGTTTTCAAGAGCCCAAACTCGGAGACCTATGTCATATTTGGAGAGGCCAAGATCGAAGACTTGAGCTCTCAGCTGCAGACCCAAGCTGCCCAGCAGTTCAGACTCCCTGACATGTCATCCATGATGGCCAAGTCAGAAGCTTCTGTTGCCACTGCTGCTGCACAAGAGGAGGAAGAAGAGGTCGATGAGACAGGGGTTGAACCTCGTGACATTGATTTGGTTATGACACAAGCTGGGGTTTCAAGGGGCAAAGCTGTCAACGCACTCAAGGCTCATGATGGTGACATTGTTGGTGCTATTATGGAGCTCACTGCTTAG MTVPVVEEEQIPIPVEEEKEEVVVEDVKEDDHDDDDDENDDEDDDDEDDTILASADGLRQSRSEKKSRKAMLKLGLKPVTGVTRVTIKRAKNILFFISKPDVFKSPNSETYVIFGEAKIEDLSSQLQTQAAQQFRLPDMSSMMAKSEASVATAAAQEEEEEVDETGVEPRDIDLVMTQAGVSRGKAVNALKAHDGDIVGAIMELTA Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo22307.1 vs. NCBI nr
Match: gi|902183743|gb|KNA10167.1| (hypothetical protein SOVF_146910 [Spinacia oleracea]) HSP 1 Score: 359.4 bits (921), Expect = 4.300e-96 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Spo22307.1 vs. NCBI nr
Match: gi|499156571|gb|AGL76941.1| (nascent polypeptide-associated complex subunit alpha-like protein 2-like protein [Amaranthus tricolor]) HSP 1 Score: 306.2 bits (783), Expect = 4.300e-80 Identity = 177/206 (85.92%), Postives = 191/206 (92.72%), Query Frame = 1
BLAST of Spo22307.1 vs. NCBI nr
Match: gi|731321378|ref|XP_010671320.1| (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.1 bits (780), Expect = 9.500e-80 Identity = 180/206 (87.38%), Postives = 190/206 (92.23%), Query Frame = 1
BLAST of Spo22307.1 vs. NCBI nr
Match: gi|1021581845|ref|XP_016180309.1| (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Arachis ipaensis]) HSP 1 Score: 260.4 bits (664), Expect = 2.700e-66 Identity = 152/192 (79.17%), Postives = 168/192 (87.50%), Query Frame = 1
BLAST of Spo22307.1 vs. NCBI nr
Match: gi|356516170|ref|XP_003526769.1| (PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Glycine max]) HSP 1 Score: 260.0 bits (663), Expect = 3.500e-66 Identity = 148/189 (78.31%), Postives = 166/189 (87.83%), Query Frame = 1
BLAST of Spo22307.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QSA7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_146910 PE=4 SV=1) HSP 1 Score: 359.4 bits (921), Expect = 3.000e-96 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1
BLAST of Spo22307.1 vs. UniProtKB/TrEMBL
Match: R4QSM6_AMATR (Nascent polypeptide-associated complex subunit alpha-like protein 2-like protein OS=Amaranthus tricolor PE=2 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 3.000e-80 Identity = 177/206 (85.92%), Postives = 191/206 (92.72%), Query Frame = 1
BLAST of Spo22307.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWJ3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050890 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 6.600e-80 Identity = 180/206 (87.38%), Postives = 190/206 (92.23%), Query Frame = 1
BLAST of Spo22307.1 vs. UniProtKB/TrEMBL
Match: A0A0B2QUH3_GLYSO (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Glycine soja GN=glysoja_015594 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 2.400e-66 Identity = 148/189 (78.31%), Postives = 166/189 (87.83%), Query Frame = 1
BLAST of Spo22307.1 vs. UniProtKB/TrEMBL
Match: I1KB25_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G137700 PE=4 SV=1) HSP 1 Score: 260.0 bits (663), Expect = 2.400e-66 Identity = 148/189 (78.31%), Postives = 166/189 (87.83%), Query Frame = 1
BLAST of Spo22307.1 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2) HSP 1 Score: 232.3 bits (591), Expect = 4.900e-60 Identity = 138/190 (72.63%), Postives = 162/190 (85.26%), Query Frame = 1
BLAST of Spo22307.1 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2) HSP 1 Score: 213.8 bits (543), Expect = 1.800e-54 Identity = 133/209 (63.64%), Postives = 171/209 (81.82%), Query Frame = 1
BLAST of Spo22307.1 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1) HSP 1 Score: 213.0 bits (541), Expect = 3.100e-54 Identity = 129/200 (64.50%), Postives = 167/200 (83.50%), Query Frame = 1
BLAST of Spo22307.1 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=1 SV=1) HSP 1 Score: 209.9 bits (533), Expect = 2.600e-53 Identity = 137/215 (63.72%), Postives = 165/215 (76.74%), Query Frame = 1
BLAST of Spo22307.1 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 4.200e-51 Identity = 126/199 (63.32%), Postives = 159/199 (79.90%), Query Frame = 1
BLAST of Spo22307.1 vs. TAIR (Arabidopsis)
Match: AT3G49470.1 (nascent polypeptide-associated complex subunit alpha-like protein 2) HSP 1 Score: 232.3 bits (591), Expect = 2.800e-61 Identity = 138/190 (72.63%), Postives = 162/190 (85.26%), Query Frame = 1
BLAST of Spo22307.1 vs. TAIR (Arabidopsis)
Match: AT1G33040.1 (nascent polypeptide-associated complex subunit alpha-like protein 5) HSP 1 Score: 213.8 bits (543), Expect = 1.000e-55 Identity = 133/209 (63.64%), Postives = 171/209 (81.82%), Query Frame = 1
BLAST of Spo22307.1 vs. TAIR (Arabidopsis)
Match: AT3G12390.1 (Nascent polypeptide-associated complex (NAC), alpha subunit family protein) HSP 1 Score: 213.0 bits (541), Expect = 1.700e-55 Identity = 129/200 (64.50%), Postives = 167/200 (83.50%), Query Frame = 1
BLAST of Spo22307.1 vs. TAIR (Arabidopsis)
Match: AT4G10480.1 (Nascent polypeptide-associated complex (NAC), alpha subunit family protein) HSP 1 Score: 209.9 bits (533), Expect = 1.500e-54 Identity = 137/215 (63.72%), Postives = 165/215 (76.74%), Query Frame = 1
BLAST of Spo22307.1 vs. TAIR (Arabidopsis)
Match: AT5G13850.1 (nascent polypeptide-associated complex subunit alpha-like protein 3) HSP 1 Score: 195.3 bits (495), Expect = 3.700e-50 Identity = 121/201 (60.20%), Postives = 166/201 (82.59%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22307.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22307.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22307.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22307.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|