Spo22445.1 (mRNA)

Overview
NameSpo22445.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPhot
LocationSuper_scaffold_60 : 592956 .. 593788 (+)
Sequence length288
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCAAGTATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGGATTCTTCAAGCTTTAGCGGACGGAACAAAACTGCTTTTTNGAGAAATATCCGCAAGTATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGGATTCTTCAAGCTTTAGCGGACGGAACAAAACTGCTTTTTAAAGAAAACCTTCTTCCATCTAGGGGGGATACATATTTATTTAGTATTGGACCTTCTATAGCAGTCATATCGATTCTACTAGGTTACTTAATAATTCCTTTTGGGTCTCGCCTTGTTCTAGCCGATCTCAGTATTGGTGTTTTTTTATGGATCGCTGTTTCAAGCATTGCTCCGATTGGACTTCTTATGTCAGGATATGGATCANNNNNNNNNNACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA

mRNA sequence

ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTATAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA

Coding sequence (CDS)

ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTATAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA

Protein sequence

MDAFPYFDSRIGNYNRCTITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo22445Spo22445gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo22445.1Spo22445.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22445.1.exon.1Spo22445.1.exon.1exon
Spo22445.1.exon.2Spo22445.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22445.1.CDS.1Spo22445.1.CDS.1CDS
Spo22445.1.CDS.2Spo22445.1.CDS.2CDS


Homology
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|985430945|ref|XP_015387348.1| (PREDICTED: uncharacterized protein LOC107177670 [Citrus sinensis])

HSP 1 Score: 162.2 bits (409), Expect = 4.600e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1

		  

Query: 18  TITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQ 77
           TITG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQ
Sbjct: 88  TITGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQ 147

Query: 78  PHENLIFPEEVLPRGNAL 96
           PHENLIFPEEVLPRGNAL
Sbjct: 148 PHENLIFPEEVLPRGNAL 165

BLAST of Spo22445.1 vs. NCBI nr
Match: gi|816377432|gb|AKF00091.1| (photosystem II protein D2 (chloroplast) [Orania palindan])

HSP 1 Score: 160.2 bits (404), Expect = 1.700e-36
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           ITG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 ITGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. NCBI nr
Match: gi|511265852|gb|AGN71959.1| (photosystem II protein D2 [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. NCBI nr
Match: gi|11497520|ref|NP_054928.1| (photosystem II protein D2 [Spinacia oleracea])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. NCBI nr
Match: gi|628819103|gb|AHY80536.1| (photosystem II protein D2 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0H3VQ29_9LILI (Photosystem II D2 protein OS=Orania palindan GN=psbD PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.200e-36
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           ITG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 ITGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: S4T0Y5_MEDTR (Photosystem II D2 protein OS=Medicago truncatula GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0K1ZA94_MONFI (Photosystem II D2 protein OS=Monarda fistulosa var. mollis GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0G2YEU1_9ROSI (Photosystem II D2 protein OS=Geranium incanum GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: F6I8M7_OLEEU (Photosystem II D2 protein OS=Olea europaea subsp. cuspidata GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_AETGR (Photosystem II D2 protein OS=Aethionema grandiflorum GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_NUPAD (Photosystem II D2 protein OS=Nuphar advena GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_NYMAL (Photosystem II D2 protein OS=Nymphaea alba GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_VITVI (Photosystem II D2 protein OS=Vitis vinifera GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_ACOAM (Photosystem II D2 protein OS=Acorus americanus GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

BLAST of Spo22445.1 vs. TAIR (Arabidopsis)
Match: ATCG00270.1 (photosystem II reaction center protein D)

HSP 1 Score: 159.8 bits (403), Expect = 8.000e-40
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353

The following BLAST results are available for this feature:
BLAST of Spo22445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|985430945|ref|XP_015387348.1|4.6e-3798.7PREDICTED: uncharacterized pro... [more]
gi|816377432|gb|AKF00091.1|1.7e-3698.7photosystem II protein D2 (chl... [more]
gi|511265852|gb|AGN71959.1|2.3e-3697.4photosystem II protein D2 [Das... [more]
gi|11497520|ref|NP_054928.1|2.3e-3697.4photosystem II protein D2 [Spi... [more]
gi|628819103|gb|AHY80536.1|2.3e-3697.4photosystem II protein D2 (pla... [more]
back to top
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0H3VQ29_9LILI1.2e-3698.7Photosystem II D2 protein OS=O... [more]
S4T0Y5_MEDTR1.6e-3697.4Photosystem II D2 protein OS=M... [more]
A0A0K1ZA94_MONFI1.6e-3697.4Photosystem II D2 protein OS=M... [more]
A0A0G2YEU1_9ROSI1.6e-3697.4Photosystem II D2 protein OS=G... [more]
F6I8M7_OLEEU1.6e-3697.4Photosystem II D2 protein OS=O... [more]
back to top
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBD_AETGR1.4e-3897.4Photosystem II D2 protein OS=A... [more]
PSBD_NUPAD1.4e-3897.4Photosystem II D2 protein OS=N... [more]
PSBD_NYMAL1.4e-3897.4Photosystem II D2 protein OS=N... [more]
PSBD_VITVI1.4e-3897.4Photosystem II D2 protein OS=V... [more]
PSBD_ACOAM1.4e-3897.4Photosystem II D2 protein OS=A... [more]
back to top
BLAST of Spo22445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00270.18.0e-4097.4photosystem II reaction center... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3D1.20.85.10coord: 18..50
score: 1.
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 18..94
score: 6.28
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 19..95
score: 6.2

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009772 photosynthetic electron transport in photosystem II
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding