Spo22555.1 (mRNA)

Overview
NameSpo22555.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02106 : 1298 .. 2274 (-)
Sequence length723
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTAAGTGCAAAACACATTTGAGCTGAGCATGGAGAAGCATTTATCTTGTTCTAAGTTGGCTATCTTAGCAATTTTTTTGCTGGCAATTTCAGGTACTCTATAAATCTTAGATTACTTAATTACGCAGTTCAATATCTTAATTATCAATACATGCAGTTTGGTTTAAAAATTTGAGAGTCTTGTGGATAATTAAACATAATTAGATACGATAATGGTCAAACGTTGCAACTAAAGAGAATAGAGGGAGTATTAAGATGTGTCATATTCACCTGATGCGTTTTAACTTTTTTAATACTTATCTAAACTTAACGAATTGTGCATATTATGCATGTAATCATGCAAACAGCTTCTGCAATAGGCAACCTGCAACAGGTTAGTGGGACAAAGTTGAATGATGGTGTTACGAAAACCATAATACAAGAACTTGAAAAGGAGCAAATTATTGATGCTTATTACAATTTAAAGCCAGAAATGGCAAGGGAACTTGGCTTGGAGACACTCAAGTGTGCATCGCAAGGCCAAGCATGTGCTTTTTGGAATCCTTGTTGTAATGAAGGTGTTTGCTTCCCTGGACCCGTTGGCGTTTGCATCTGATAATTAGATCGATCGTGTGAATGTCACGTCTCTACGACTCATTATCGTACGTGTGCCTAGTTCCTGATTGTGTTCGTGTTCGTGTTCTTGTTTGTGTTTGTGGAGTCTGTCATGTTAAGAGGGTCGGCGCTCATCTGATTGCTAAGGAATAAGGATCAGATGATGATGATTTCGTATCTATATATGTACTTTCCTTTGATGTTTATAAATAAAACCCCAAATTGTTTTACCGTTTTCTTGTGAAATGATAAAGGTTACAACTTGCGACAACAAAAATATTTTTTGTCTCAATAACACATGTGTGATTTGAGGAGAACTCCCAGTCCGGCCTACACGTGAGAGACACTGTTCTTTCGATCCCTTGATCTTCTAGCTTCCACA

mRNA sequence

AATTAAGTGCAAAACACATTTGAGCTGAGCATGGAGAAGCATTTATCTTGTTCTAAGTTGGCTATCTTAGCAATTTTTTTGCTGGCAATTTCAGCTTCTGCAATAGGCAACCTGCAACAGGTTAGTGGGACAAAGTTGAATGATGGTGTTACGAAAACCATAATACAAGAACTTGAAAAGGAGCAAATTATTGATGCTTATTACAATTTAAAGCCAGAAATGGCAAGGGAACTTGGCTTGGAGACACTCAAGTGTGCATCGCAAGGCCAAGCATGTGCTTTTTGGAATCCTTGTTGTAATGAAGGTGTTTGCTTCCCTGGACCCGTTGGCGTTTGCATCTGATAATTAGATCGATCGTGTGAATGTCACGTCTCTACGACTCATTATCGTACGTGTGCCTAGTTCCTGATTGTGTTCGTGTTCGTGTTCTTGTTTGTGTTTGTGGAGTCTGTCATGTTAAGAGGGTCGGCGCTCATCTGATTGCTAAGGAATAAGGATCAGATGATGATGATTTCGTATCTATATATGTACTTTCCTTTGATGTTTATAAATAAAACCCCAAATTGTTTTACCGTTTTCTTGTGAAATGATAAAGGTTACAACTTGCGACAACAAAAATATTTTTTGTCTCAATAACACATGTGTGATTTGAGGAGAACTCCCAGTCCGGCCTACACGTGAGAGACACTGTTCTTTCGATCCCTTGATCTTCTAGCTTCCACA

Coding sequence (CDS)

ATGGAGAAGCATTTATCTTGTTCTAAGTTGGCTATCTTAGCAATTTTTTTGCTGGCAATTTCAGCTTCTGCAATAGGCAACCTGCAACAGGTTAGTGGGACAAAGTTGAATGATGGTGTTACGAAAACCATAATACAAGAACTTGAAAAGGAGCAAATTATTGATGCTTATTACAATTTAAAGCCAGAAATGGCAAGGGAACTTGGCTTGGAGACACTCAAGTGTGCATCGCAAGGCCAAGCATGTGCTTTTTGGAATCCTTGTTGTAATGAAGGTGTTTGCTTCCCTGGACCCGTTGGCGTTTGCATCTGA

Protein sequence

MEKHLSCSKLAILAIFLLAISASAIGNLQQVSGTKLNDGVTKTIIQELEKEQIIDAYYNLKPEMARELGLETLKCASQGQACAFWNPCCNEGVCFPGPVGVCI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo22555Spo22555gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo22555.1Spo22555.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22555.1.utr5p.1Spo22555.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22555.1.CDS.2Spo22555.1.CDS.2CDS
Spo22555.1.CDS.1Spo22555.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22555.1.utr3p.1Spo22555.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22555.1.exon.2Spo22555.1.exon.2exon
Spo22555.1.exon.1Spo22555.1.exon.1exon


Homology
[Close]
BLAST of Spo22555.1 vs. NCBI nr
Match: gi|902227429|gb|KNA20680.1| (hypothetical protein SOVF_049770 isoform A [Spinacia oleracea])

HSP 1 Score: 71.2 bits (173), Expect = 1.200e-9
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1 

		  

Query: 1  MEKHLSCSKLAILAIFLLAISASAIGNLQQVSGTKLNDGVTKTIIQELEKEQIIDAYY-N 60
          M+ H SCSKLA+LA  LL ISA  +  +Q  + +++ D VT+ IIQE+ KE++I AYY N
Sbjct: 1  MKNHSSCSKLALLAFLLLTISAPTL--VQPTTTSEIVDDVTQAIIQEIAKEELIAAYYNN 60

Query: 61 LKPEMA--RELG--LETLKCASQGQACAFWNPCCNEGVC 95
          +  E A  +E G   ETLKCA +  AC+  + CC    C
Sbjct: 61 INQEKAIIKEFGSAKETLKCAKKAGACSSSSDCCKGYYC 97
[Close]
BLAST of Spo22555.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RME6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049770 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.100e-10
Identity = 45/99 (45.45%), Postives = 62/99 (62.63%), Query Frame = 1 

		  

Query: 1  MEKHLSCSKLAILAIFLLAISASAIGNLQQVSGTKLNDGVTKTIIQELEKEQIIDAYY-N 60
          M+ H SCSKLA+LA  LL ISA  +  +Q  + +++ D VT+ IIQE+ KE++I AYY N
Sbjct: 1  MKNHSSCSKLALLAFLLLTISAPTL--VQPTTTSEIVDDVTQAIIQEIAKEELIAAYYNN 60

Query: 61 LKPEMA--RELG--LETLKCASQGQACAFWNPCCNEGVC 95
          +  E A  +E G   ETLKCA +  AC+  + CC    C
Sbjct: 61 INQEKAIIKEFGSAKETLKCAKKAGACSSSSDCCKGYYC 97
The following BLAST results are available for this feature:
BLAST of Spo22555.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902227429|gb|KNA20680.1|1.2e-945.4hypothetical protein SOVF_0497... [more]
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BLAST of Spo22555.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RME6_SPIOL8.1e-1045.4Uncharacterized protein OS=Spi... [more]
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BLAST of Spo22555.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22555.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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