Spo22572.1 (mRNA) | SpinachBase

Overview


Name	Spo22572.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S2, chloroplastic
Location	SpoScf_04628 : 2515 .. 4136 (+)
Sequence length	1065

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCATGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCACAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAAAGAATTTCTGTAATAGATCAAAACAACAATAATTTTTGGGGTTTATATAGAAGAAATTCATCTTTTTTATCTTTTATGTATTTGTTATGGTTATTTAATTTAGTAATAAAATAAAGAAATTAAATAACCATAACAAATAGAAAGGAATTAATGGTTTTGGTTGTATATCAATGGCCAATCCAAGGTAGAAAAGAAGGTTCCATTGGAACAATTTTTTATTTCAGAATACCTCATCTCTTTAATAATATTAAAAAAAAGAGAACGTGTGGGGAGAAATGACAAGAAGATATTGGAACATCAATTTGGAAGAGATGATGGAAGCGGGAGTTCATTTTGGTCACGGTACTCGGAAATGGAATCCTCGAATGTCGCCTTATATCTCTGCAAAATGTAAAGGGATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGGATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGGGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

mRNA sequence

ATGAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCATGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCACAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGGATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGGGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

Coding sequence (CDS)

ATGAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCATGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCACAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGGATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGGGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

Protein sequence

MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo22572	Spo22572	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo22572.1	Spo22572.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22572.1.exon.1	Spo22572.1.exon.1	exon
Spo22572.1.exon.2	Spo22572.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22572.1.CDS.1	Spo22572.1.CDS.1	CDS
Spo22572.1.CDS.2	Spo22572.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo22572.1 vs. NCBI nr
Match: gi|223536811|gb|EEF38450.1| (DNA-directed RNA polymerase beta chain, putative [Ricinus communis])

HSP 1 Score: 464.9 bits (1195), Expect = 1.200e-127
Identity = 242/287 (84.32%), Postives = 251/287 (87.46%), Query Frame = 1


		  
Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVF 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKE VVLGGMIPVGTGFKG V          
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKEKVVLGGMIPVGTGFKGLVQ--------- 264

Query: 181 DASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR 240
             +SR KQFLIVGTKNKAAD VARAAIRARCHYVNKKWLG +LTNWSTTE RL  F+DLR
Sbjct: 265 --ASRRKQFLIVGTKNKAADLVARAAIRARCHYVNKKWLGSILTNWSTTENRLQNFKDLR 324

Query: 241 MEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVD 288
           MEQ   RL RLPK DAA +KRQL+HLQTYLGGIKYMTGLPDIVIIVD
Sbjct: 325 MEQKTCRLNRLPKGDAARLKRQLAHLQTYLGGIKYMTGLPDIVIIVD 360

[Close]

BLAST of Spo22572.1 vs. NCBI nr
Match: gi|223546420|gb|EEF47920.1| (30S ribosomal protein S2, putative [Ricinus communis])

HSP 1 Score: 437.6 bits (1124), Expect = 2.100e-119
Identity = 238/317 (75.08%), Postives = 250/317 (78.86%), Query Frame = 1


		  
Query: 77  MSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLA 136
           MSNVF PGELIGL RA+RTGRALEEAI YRA LLGI RASLNTQSFISEASFQET RVLA
Sbjct: 1   MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60

Query: 137 KAALRGRIDWLKGLKENVVLGGMIPV---------------------------------G 196
           KAALRGRI+WLKGLKENVVLGGMIP+                                  
Sbjct: 61  KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQEMMKAGVHFGHGTRKWNPRMAPYIS 120

Query: 197 TGFKGF--------VHH-SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYV 256
           T  KG          H  S+ACDLVFDA+SR KQFLIVGTKNKAADSVARAAIRARCHYV
Sbjct: 121 TKRKGIHITNLTRTAHFLSEACDLVFDAASRRKQFLIVGTKNKAADSVARAAIRARCHYV 180

Query: 257 NKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIK 316
           NKKWLGG+LTNWSTTETR+ KFRDLRMEQ  GRL RLPK DAA ++RQL+HLQTYLG IK
Sbjct: 181 NKKWLGGILTNWSTTETRIQKFRDLRMEQKTGRLNRLPKGDAARLERQLAHLQTYLGRIK 240

Query: 317 YMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRL 352
           YM GLPDIVIIVDQQE+YT LRECITLGIPTICLIDTNC+ DLADISIPANDDAIASIRL
Sbjct: 241 YMMGLPDIVIIVDQQEDYTTLRECITLGIPTICLIDTNCDLDLADISIPANDDAIASIRL 300

[Close]

BLAST of Spo22572.1 vs. NCBI nr
Match: gi|223525048|gb|EEF27828.1| (DNA-directed RNA polymerase beta chain, putative [Ricinus communis])

HSP 1 Score: 412.5 bits (1059), Expect = 7.300e-112
Identity = 225/299 (75.25%), Postives = 236/299 (78.93%), Query Frame = 1


		  
Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELI L +AERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV------------------ 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV                  
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQEMMKAGVHF 264

Query: 181 GTGFKGF--------------VHH----------SKACDLVFDASSRGKQFLIVGTKNKA 240
           G G + +              +H           S+ACDLVFDA+SR KQFLIVGTKNKA
Sbjct: 265 GHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKA 324

Query: 241 ADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAA 258
           ADSVARAAIRARCHYVNKKWLGG+LTNWSTTETRL KFRDLRMEQ  GRL RLPK DAA
Sbjct: 325 ADSVARAAIRARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQKTGRLNRLPKGDAA 383

[Close]

BLAST of Spo22572.1 vs. NCBI nr
Match: gi|11497513|ref|NP_054921.1| (ribosomal protein S2 [Spinacia oleracea])

HSP 1 Score: 365.2 bits (936), Expect = 1.300e-97
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. NCBI nr
Match: gi|188036203|pdb|3BBN|B (Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome)

HSP 1 Score: 362.1 bits (928), Expect = 1.100e-96
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 51  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 110

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 111 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 170

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 171 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 230

Query: 353 N 354
           N
Sbjct: 231 N 231

[Close]

BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: B9SD12_RICCO (DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_1067230 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 8.600e-128
Identity = 242/287 (84.32%), Postives = 251/287 (87.46%), Query Frame = 1


		  
Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVF 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKE VVLGGMIPVGTGFKG V          
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKEKVVLGGMIPVGTGFKGLVQ--------- 264

Query: 181 DASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR 240
             +SR KQFLIVGTKNKAAD VARAAIRARCHYVNKKWLG +LTNWSTTE RL  F+DLR
Sbjct: 265 --ASRRKQFLIVGTKNKAADLVARAAIRARCHYVNKKWLGSILTNWSTTENRLQNFKDLR 324

Query: 241 MEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVD 288
           MEQ   RL RLPK DAA +KRQL+HLQTYLGGIKYMTGLPDIVIIVD
Sbjct: 325 MEQKTCRLNRLPKGDAARLKRQLAHLQTYLGGIKYMTGLPDIVIIVD 360

[Close]

BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: B9RL05_RICCO (30S ribosomal protein S2, putative OS=Ricinus communis GN=RCOM_0940830 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.500e-119
Identity = 238/317 (75.08%), Postives = 250/317 (78.86%), Query Frame = 1


		  
Query: 77  MSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLA 136
           MSNVF PGELIGL RA+RTGRALEEAI YRA LLGI RASLNTQSFISEASFQET RVLA
Sbjct: 1   MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60

Query: 137 KAALRGRIDWLKGLKENVVLGGMIPV---------------------------------G 196
           KAALRGRI+WLKGLKENVVLGGMIP+                                  
Sbjct: 61  KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQEMMKAGVHFGHGTRKWNPRMAPYIS 120

Query: 197 TGFKGF--------VHH-SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYV 256
           T  KG          H  S+ACDLVFDA+SR KQFLIVGTKNKAADSVARAAIRARCHYV
Sbjct: 121 TKRKGIHITNLTRTAHFLSEACDLVFDAASRRKQFLIVGTKNKAADSVARAAIRARCHYV 180

Query: 257 NKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIK 316
           NKKWLGG+LTNWSTTETR+ KFRDLRMEQ  GRL RLPK DAA ++RQL+HLQTYLG IK
Sbjct: 181 NKKWLGGILTNWSTTETRIQKFRDLRMEQKTGRLNRLPKGDAARLERQLAHLQTYLGRIK 240

Query: 317 YMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRL 352
           YM GLPDIVIIVDQQE+YT LRECITLGIPTICLIDTNC+ DLADISIPANDDAIASIRL
Sbjct: 241 YMMGLPDIVIIVDQQEDYTTLRECITLGIPTICLIDTNCDLDLADISIPANDDAIASIRL 300

[Close]

BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: B9T8I6_RICCO (DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_0397000 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 5.100e-112
Identity = 225/299 (75.25%), Postives = 236/299 (78.93%), Query Frame = 1


		  
Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELI L +AERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV------------------ 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV                  
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQEMMKAGVHF 264

Query: 181 GTGFKGF--------------VHH----------SKACDLVFDASSRGKQFLIVGTKNKA 240
           G G + +              +H           S+ACDLVFDA+SR KQFLIVGTKNKA
Sbjct: 265 GHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKA 324

Query: 241 ADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAA 258
           ADSVARAAIRARCHYVNKKWLGG+LTNWSTTETRL KFRDLRMEQ  GRL RLPK DAA
Sbjct: 325 ADSVARAAIRARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQKTGRLNRLPKGDAA 383

[Close]

BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQR1_BETVU (Ribosomal protein S2 OS=Beta vulgaris subsp. vulgaris GN=rps2 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.900e-96
Identity = 178/182 (97.80%), Postives = 181/182 (99.45%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQ AGRLARLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQKAGRLARLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: A0A165XMG5_9CARY (Ribosomal Protein S2 OS=Bienertia sinuspersici GN=rps2 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.100e-95
Identity = 177/182 (97.25%), Postives = 180/182 (98.90%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQ AGRL RLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQKAGRLTRLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_SPIOL (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea GN=rps2 PE=1 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 8.300e-100
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps2 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.600e-95
Identity = 173/182 (95.05%), Postives = 178/182 (97.80%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ AGRL RLPKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 5.200e-94
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAI+ARCHYVNKKWLGGM TNWSTTETR
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ  GRL RLPKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_COFAR (30S ribosomal protein S2, chloroplastic OS=Coffea arabica GN=rps2 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.900e-93
Identity = 168/182 (92.31%), Postives = 174/182 (95.60%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA SRGKQFLIVGTKNKAADSVA AAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDAGSRGKQFLIVGTKNKAADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQ  GRL RLPKRDAA++KRQLS LQTYLGGIKYMTGLPDIVII+DQ EEY
Sbjct: 115 LHKFRDLRMEQKTGRLNRLPKRDAAMLKRQLSRLQTYLGGIKYMTGLPDIVIIIDQHEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAI+SIRLIL KLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236

[Close]

BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_CARPA (30S ribosomal protein S2, chloroplastic OS=Carica papaya GN=rps2 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 3.800e-92
Identity = 168/181 (92.82%), Postives = 174/181 (96.13%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ  GRL RLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVII+DQQEEY
Sbjct: 115 LHKFRDLRTEQKTGRLNRLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIIDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTI LIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEG SSYI+
Sbjct: 175 TALRECITLGIPTISLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGHSSYIQ 234

Query: 353 N 354
           N
Sbjct: 235 N 235

[Close]

BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match: ATCG00160.1 (ribosomal protein S2)

HSP 1 Score: 323.9 bits (829), Expect = 1.200e-88
Identity = 161/181 (88.95%), Postives = 168/181 (92.82%), Query Frame = 1


		  
Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAAD V+RAAIRARCHYVNKKWLGGMLTNWSTTE R
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ      RLPKRDAAV+KRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY
Sbjct: 115 LHKFRDLRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTI LIDTNCNPDLADISIPANDDAIASIR IL KLVFAICEGRSSYI+
Sbjct: 175 TALRECITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQ 234

Query: 353 N 354
           N
Sbjct: 235 N 235

[Close]

BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 306.6 bits (784), Expect = 2.000e-83
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 1


		  
Query: 1    MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
            +NLEKRI  WN+ ITRILG PWGF+IGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIE
Sbjct: 1158 LNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 1217

Query: 61   IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
            IIVRQITSKVLVSE+GMSNVFLPGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 1218 IIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1277

Query: 121  SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGF-KGFVHHSK 175
            SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP GTGF KG VH S+
Sbjct: 1278 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLVHCSR 1332

[Close]

BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 50.1 bits (118), Expect = 3.300e-6
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1


		  
Query: 101  EAICYRATLLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 160
            + + YR  L+ ITR  +N      +   SF+ET  +L  AA     D L+G+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 161  MIPVGTG 166
            + P+GTG
Sbjct: 1454 LAPIGTG 1460

The following BLAST results are available for this feature:

BLAST of Spo22572.1 vs. NCBI nr
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)

BLAST of Spo22572.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|223536811\|gb\|EEF38450.1\|	1.2e-127	84.3	DNA-directed RNA polymerase be...	[more]
gi\|223546420\|gb\|EEF47920.1\|	2.1e-119	75.0	30S ribosomal protein S2, puta...	[more]
gi\|223525048\|gb\|EEF27828.1\|	7.3e-112	75.2	DNA-directed RNA polymerase be...	[more]
gi\|11497513\|ref\|NP_054921.1\|	1.3e-97	99.4	ribosomal protein S2 [Spinacia...	[more]
gi\|188036203\|pdb\|3BBN\|B	1.1e-96	99.4	Chain B, Homology Model For Th...	[more]

BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
B9SD12_RICCO	8.6e-128	84.3	DNA-directed RNA polymerase be...	[more]
B9RL05_RICCO	1.5e-119	75.0	30S ribosomal protein S2, puta...	[more]
B9T8I6_RICCO	5.1e-112	75.2	DNA-directed RNA polymerase be...	[more]
A0A023ZQR1_BETVU	3.9e-96	97.8	Ribosomal protein S2 OS=Beta v...	[more]
A0A165XMG5_9CARY	1.1e-95	97.2	Ribosomal Protein S2 OS=Biener...	[more]

BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RR2_SPIOL	8.3e-100	99.4	30S ribosomal protein S2, chlo...	[more]
RR2_EUCGG	1.6e-95	95.0	30S ribosomal protein S2, chlo...	[more]
RR2_VITVI	5.2e-94	93.4	30S ribosomal protein S2, chlo...	[more]
RR2_COFAR	9.9e-93	92.3	30S ribosomal protein S2, chlo...	[more]
RR2_CARPA	3.8e-92	92.8	30S ribosomal protein S2, chlo...	[more]

BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
ATCG00160.1	1.2e-88	88.9	ribosomal protein S2	[more]
ATCG00170.1	2.0e-83	90.2	DNA-directed RNA polymerase fa...	[more]
AT4G35800.1	3.3e-6	37.3	RNA polymerase II large subuni...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001865	Ribosomal protein S2	PRINTS	PR00395	RIBOSOMALS2	coord: 318..332 score: 1.2E-23coord: 297..308 score: 1.2E-23coord: 209..226 score: 1.2E-23coord: 280..297 score: 1.2
IPR001865	Ribosomal protein S2	PFAM	PF00318	Ribosomal_S2	coord: 171..346 score: 1.4
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	HAMAP	MF_00291_B	Ribosomal_S2_B	coord: 101..347 score: 26
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	PANTHER	PTHR12534	30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR	coord: 174..352 score: 3.2
IPR005706	Ribosomal protein S2, bacteria/mitochondria/plastid	TIGRFAMs	TIGR01011	TIGR01011	coord: 173..348 score: 2.8
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 30..118 score: 3.
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00963	RIBOSOMAL_S2_2	coord: 280..304 scor
IPR023591	Ribosomal protein S2, flavodoxin-like domain	unknown	SSF52313	Ribosomal protein S2	coord: 170..350 score: 2.75
None	No IPR available	GENE3D	1.10.287.610		coord: 222..274 score: 2.3
None	No IPR available	GENE3D	3.40.50.10490		coord: 173..221 score: 4.6E-50coord: 280..349 score: 4.6
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 32..174 score: 2.53

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006412	translation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008777	acetylornithine deacetylase activity