Spo22616.1 (mRNA) | SpinachBase

Overview


Name	Spo22616.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01126 : 181868 .. 184467 (+)
Sequence length	630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTAGAATCCGTGTTTCCACGACGCCGGTCTGCGTCTTACGCATTTGTCGACAAAATATAGCGTCGAGATTTCGTCTGTGCTAGTCACGTGGGTTACTAACCGCCAGTTCAAAGAAATAACCCCCGTAAAAATCTAAACTCCAATACTAATCAACCCTAGCTAGGCGCCCGCCCATTCATCTTCTCTCCCCTCCCTCTCCTCATAGAAATTGCAAATTGCAAAGAATCAATAAATTCTCGTCTCAAATCCATCAATGGGCGAATTCAAATTGGTTTCTCTCTCCTAATACTATGCTGCTTCATCTTCCCCGCTTGCTAATTCGCCGCCACTGAAAAAGAAGCACAAAAGAGGAGCTCATGGAAGAACTGCTACTCAAACCGTCGCTCCGTCGTCAATAATACTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGGTAATTGTATTTATTTATTTTACTTCAATGTTAGATTTTTTTCCTTCAATTTTTCTACGGATCGGGACCCTTTAAGATGAATTTGAGTCCCTTTGTTTTGTTCCTGGTGAATTATAGATCTGGTGTTGTGTTTATGAGTTTCTTCTTTTTTTGTTCTGTTTCAAAAAAATTGGTTTTCTCTCTTCAACTTGTCGAGTATTTCGGGAATTAGGGTTATTGATTTTGTTTCTATTATTTTGGTTTGATTCATGATGATGAGGGACCCTGAACAATCCGCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGTTTGTTGGGTTTTTAATATTTAATTTTTTTGCCATTTTTTCAGCTAATAGCTATTGATAATGCTCATTTTTTTCTTATGAATTTTACTTTGCACTTAAATTAATTAAATGATCCTGGAATTGCAATTGTTGCATAAAATGGTGGGTGTTTGGGGGCAATGTGAATCTTCTTATGTCTTGCTCTATTGATGTGTAAGCGTATGAGTCGGTTTTTGGTTTTTAATACATTATGTTGGATCGTAATGATTGAACCAAAGGGTTCTGATGTTTCTGGACTATAGAATCGGGCAACTTTGATAGTCGGGAGATTCATTCAATTGAAGTCACAGACAATGAAAACATTGTAGTTTATTGTTTTTACTGTTGCCAAGCAGGGTCAGGGGTTAGTAACTCTAGGTTGTTGAATTTTCTCCGTTGTATTCATACATTTCATTGTGAGAAGAGAAACAAACAAAATCAATGTGTAGGAGCACAAAAATTTTAGTCTGCACAGTCTTTATTTATCACTAGTAAACTTTAACTTCGAAATTCAACTACTTTATGATATTGAGCTGCAAATTCATCTATAATGTAATGGCTAGGTTAGTAAATTGGCACTGATTTCATATTGAATGAGGATGACATTGCAGAAATGTGTCTGTTGGTGCCCTGTTTGTGTTTATTTTAGTAGCTAATTTTAGGCCTTATTATCATCAACTATCTAGCACTACTACAAAATGCGTCATTTGAGTTTTTTAATTGATTGTTTTTTACAGTCCAACCCCTTCTTTATTTTCGCAGTATTTGCCGCTTGAACAATTTTATAGTTTCGTTTCACTTTTTGTTATTAGATGCTAAGGGATTTCTTAATTGATAATTTTAGAATAAAAATTCAATTGTTACAAGTCTTTTTCCCCCCTCTTGTATCTGACTGTGGATGCAGCCATGATGCATTTAATATCTTCCGTTGTATCATGTTTGATTGATGATTATATTGAGTAATTGTAAACTGCTATTCTAAGTTGTTGTCACATGTGGTTTGCTGGCCATTTTAGGCACAATGAAAGCTTCAGTAATATTTTCAGTTCTAAATATCAAGCATCAGTTACATCATGAATGACAGAGTATACTGAATAAATTTTATCTATTAGTGCCTGGAAGGATAGAAAACATGCTTGTCTATTCTAAGTCTATGTCTCTATTCCTACCAGTTACATTTCCTGTTTCCTGTTAATTTCCATGTTCCCAATTTTACGAGTTTGGTACTAGAATTATTTTCATTACACTATCTAAGTTGATGATGACTGTTTGAGCATCTGCTGGATTTAGATTAATTTCATATTTCTTGATCAACACTACTACAATTTCCGTAGTTTCTCGACGCTGTACAAATTTGCTGAGGCTGGATTTAATCTAAAAAAATCTTATAGAATCTCATTTACACGAGTGTCCAGTTTAGATTTCAGACTATTACATACGGAATACTAGATTCAGGGCAGTTGAGTATTGAATTACTATTTTATTGTCATTTGCATGATTAGGCGTATAGCGTAAATGTTGCACTGGCTGAATATGTCTTATGTATAGCGTAAAAGTTTGACAAGGCGTAACACTACTTGTGTTTTTCAAGAAATAAATGATTCTTGTTCTTGCCAAGATGTATTTCTTGCATTACTCTTCAAGCTGAAGGCCAACTCTTGTTTTTTTTACAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

mRNA sequence

AAATTTAGAATCCGTGTTTCCACGACGCCGGTCTGCGTCTTACGCATTTGTCGACAAAATATAGCGTCGAGATTTCGTCTGTGCTAGTCACGTGGGTTACTAACCGCCAGTTCAAAGAAATAACCCCCGTAAAAATCTAAACTCCAATACTAATCAACCCTAGCTAGGCGCCCGCCCATTCATCTTCTCTCCCCTCCCTCTCCTCATAGAAATTGCAAATTGCAAAGAATCAATAAATTCTCGTCTCAAATCCATCAATGGGCGAATTCAAATTGGTTTCTCTCTCCTAATACTATGCTGCTTCATCTTCCCCGCTTGCTAATTCGCCGCCACTGAAAAAGAAGCACAAAAGAGGAGCTCATGGAAGAACTGCTACTCAAACCGTCGCTCCGTCGTCAATAATACTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

Coding sequence (CDS)

ATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

Protein sequence

MRFLCVDLIHSRFYYEVTPDITDAPKDQVQDQGTDVVGEVVEVGSSATKFKAGDKVLTLLSHD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo22616	Spo22616	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo22616.1	Spo22616.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22616.1.exon.1	Spo22616.1.exon.1	exon
Spo22616.1.exon.2	Spo22616.1.exon.2	exon
Spo22616.1.exon.3	Spo22616.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22616.1.utr5p.1	Spo22616.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo22616.1.CDS.1	Spo22616.1.CDS.1	CDS
Spo22616.1.CDS.2	Spo22616.1.CDS.2	CDS
Spo22616.1.CDS.3	Spo22616.1.CDS.3	CDS

Homology

[Close]

BLAST of Spo22616.1 vs. NCBI nr
Match: gi|902052257|gb|KNA02862.1| (hypothetical protein SOVF_214630, partial [Spinacia oleracea])

HSP 1 Score: 58.5 bits (140), Expect = 4.700e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

		  
Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHD 64
          DVVGEVVEVGSSATKFKAGDKVLTLLSHD
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHD 29

[Close]

BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6X5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214630 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.300e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1

		  
Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHD 64
          DVVGEVVEVGSSATKFKAGDKVLTLLSHD
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHD 29

The following BLAST results are available for this feature:

BLAST of Spo22616.1 vs. NCBI nr
BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
BLAST of Spo22616.1 vs. ExPASy Swiss-Prot
BLAST of Spo22616.1 vs. TAIR (Arabidopsis)

BLAST of Spo22616.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
gi\|902052257\|gb\|KNA02862.1\|	4.7e-6	100.	hypothetical protein SOVF_2146...	[more]

BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9Q6X5_SPIOL	3.3e-6	100.	Uncharacterized protein (Fragm...	[more]

BLAST of Spo22616.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo22616.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011032	GroES-like	GENE3D	3.90.180.10		coord: 30..60 score: 8.
IPR011032	GroES-like	unknown	SSF50129	GroES-like	coord: 32..62 score: 5.

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0016491	oxidoreductase activity