Spo22761.1 (mRNA)

Overview
NameSpo22761.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_05507 : 2530 .. 5363 (-)
Sequence length818
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAGTCTTTCTTCGTCTCCTCCAAGGGTCCAACTTGCTACTTTCTCTCTCCTCACTTCCAGGTTTCTTCGTGATTTTCTCTCTCTCCTCCTACTCGATGCTTTCTCCTTCCCTCAACTCTGCTCTCACTGCATCTACATCATGAGCTTCTTTTCCTCTGGGGGTGCTGCGCTTTTTCCCCTTCCTCACACGCTCTCTTTCTCTCTGCTCTTCATGAGAGACTTCAATCCACTGCAGCTAGGGCATACCTTGAGTAGCAACACAACGGAGACGAAAAATTCACCAAGCAAACGAAGAAGTATTCGTCTCAATTGCTGTCGAAGGTGAGCCGATCCACCTATTTCTAGGGTTTAGGGTTCGTAATTTGCCACCGTTCCCGCAAAATAGAGGTACCTTTCTCTAATTATTATTATTATTATCTTCTTACCACATCTTTCATGATTTCAATAATTTTTTGCTAGAATGTAAACTTTGGAAATTTGGGAATATTATTTAGGGTCATTTTTTACTTTCACTTCTTTGATTGATGTGCATTTAGTTATGCTTATTCAAATCACATTTTTTTGCTAATGAATTTCTTAATTGTGAATTAACATTTAGATAATTTGGTGGCGCTTTTGAATTGGCAGGTGAGGAGAATTAAGCTCCAGAAAAGTGAAAGGCTAGCGCAAGCAACACCAACAAAAGAGGTGGCTACAAGATCAATGAAAACAAGCTCCTTCCCAAGAGAAAAACAGGTTTTTTTTTTTAAAAAAAAAAATTCGAAGTTATTCTTGAATGATTCTTATTATTTTTCAATAAAGCGTTAAGTTCTGGAATCAATATTTGTAGTTGTGAATTTCGATTATATTTGAATTTGGTAAATCTGGGTAGATTGAGTTGATCAAAATTGCTGATGGGTTGGTAAGGAATTAAGCTAATAATCACTCATTTATATGGATTTGATTGGTTGTTGTTTTAAGATGTAGAGAGAGTCTAAGGGAGGCCTATGAGGGGGTTTTATTGAGTGCTTTATCCCCGAGTATTCTAAGCTTAGTAGTCATATTATGCTGATGGATTTTTCTATTGCCTATTTCGTGTGTAAGAACTTAGTTAAGCTTTTATCAGTTAAGTTGACACTTACTCTTTACCCCATTGTAATGAGATTATTGTATTAGATTAATTTTTGTTTATCTTACAAACAACATCCAAGATTAACAACTCCAACAGCGTTTCTGATATAGTTAAACAAAGTCCCTACATTGTTGGGTTACTAGGTATATATATGGGTTTGTTTGTTACAACCTCACATGCGAATAAAGACTTTTTCTTGAATATTTTTCAGAAGTTGAGAATTGCACATGGTATACGAACTTTATTGCGGAGAAATGTTAAGTGGGTTCATACTGAATAACTAGCGCACATTCCTTCTGCCTTCGAGGAAATTGGTTGATCATTAATATGAGAGATGTTAACTAACTTCAATCTGCAGCTGTTCAATTCATACCAATTCTTGCAGCGTATTTAAACATTGTACTTGGAGTATTATATGTCGTTCTACATGGGTTTAGGGGGCATATCTGGAAGAAGGTAGCTCCAAGCTTCTAACTGTACTGTCATCTTTATTAACATATGTTTTTTCTTTAAGGAAGCCTCAATCGGTAATATCCTCTTTTTCGACCGATCTGTTGACATCGTTATAAAATTCTCACTTTGAAGCTTGATTTAATGAATGTGATAGTAAACTGCATACAAAACTTAATTATATCCTCTATGAAAAAAGAACGCCAACAACACTCCAAAGCATGCTCTTATGAAGTAATCGACTGACTTTGCCCACCAGATTGCTAACCACTCTAAACTCTGTAGTGGATTCTCTTTTTTAATTGTTCATGGTAATATATTGACATCGAATTCATCTCTTCATTTTGGGGTACTTTTTCTTGAATTTGATGATTGTGGTTTGAGATTGTTATTATGATTGTTATATAAACTCTACTAGATGCATGAGTTTAGACGAACTTCAGTGTATAGGTGACATTTTGTGCAGCTGTCTATGCTTGTTTTGTTGTGGATAATCCGTTAATTATGATAGCAGTTTTATCAGGTAACATATTGTTTGTATATGAGGAATTGGAGAGGAAGGGGGGAAGGGAAAGTGAGGAGAACAAGTTCTCTTGTTTGGATAAAAGGTTGTGGGAACTGGGAAGGAAGGAGAAGGAGAGAGATCCCGCGTATCTGTTTGCACTATACTTTATCAATTTATTTGTCAATATAATATTACATAGATTTCTCTTTATATATTCTAAGGGCTTTGCAATATTTTTTGAATCTGAATTTGTTTTATTTAGAGAATGATTTTGAAACGGAATTGAATAATACAAGGTTGTATTTGACATATATTTGGGAAATAATATGTTCAAGAGTTCTTTACGAGCTTCAATTTATTTTTATGATTTTGGTGGGTTGCAATTGAATTATTTTGTGGGGTACTTCTAACAGGTGAGCTTAGAGAAGTGGCTGAGTTGCAATGCAGTGCCGATAGGGTTCATGCTTCAGGTAACTATACTATATTTTGTTAAAGTATTGCCTTTTCTGGGCCATTAATATTTCTAATGGCAATACTTTGGTGTTGTCCTGTCATCACCGTAGGTGGCGAAGCATGTCAACAACTCCTCGTGATCCCCTAACCTCTCTATTGATTTCCGTGGTTTCATCTCCGTCATTATGTTCCGGGTATACCTCCATTTCTTATCTGTAGCCCTTTATTACTTATTTACTTTCTTATACAATTTTGACTTTTGCCAATTGCCATTTTTCAGTTTAATTTTTATAATCGCATTAAACTTCAC

mRNA sequence

ATGCCGAGTCTTTCTTCGTCTCCTCCAAGGGTCCAACTTGCTACTTTCTCTCTCCTCACTTCCAGGTTTCTTCGTGATTTTCTCTCTCTCCTCCTACTCGATGCTTTCTCCTTCCCTCAACTCTGCTCTCACTGCATCTACATCATGAGCTTCTTTTCCTCTGGGGGTGCTGCGCTTTTTCCCCTTCCTCACACGCTCTCTTTCTCTCTGCTCTTCATGAGAGACTTCAATCCACTGCAGCTAGGGCATACCTTGAGTAGCAACACAACGGAGACGAAAAATTCACCAAGCAAACGAAGAAGGTTCGTAATTTGCCACCGTTCCCGCAAAATAGAGGTGAGGAGAATTAAGCTCCAGAAAAGTGAAAGGCTAGCGCAAGCAACACCAACAAAAGAGGTGGCTACAAGATCAATGAAAACAAGCTCCTTCCCAAGAGAAAAACAGAAGTTGAGAATTGCACATGCTGTTCAATTCATACCAATTCTTGCAGCGTATTTAAACATTGTACTTGGAGTATTATATGTCGTTCTACATGGGTTTAGGGGGCATATCTGGAAGAAGGTGAGCTTAGAGAAGTGGCTGAGTTGCAATGCAGTGCCGATAGGGTTCATGCTTCAGGTGGCGAAGCATGTCAACAACTCCTCGTGATCCCCTAACCTCTCTATTGATTTCCGTGGTTTCATCTCCGTCATTATGTTCCGGGTATACCTCCATTTCTTATCTGTAGCCCTTTATTACTTATTTACTTTCTTATACAATTTTGACTTTTGCCAATTGCCATTTTTCAGTTTAATTTTTATAATCGCATTAAACTTCAC

Coding sequence (CDS)

ATGCCGAGTCTTTCTTCGTCTCCTCCAAGGGTCCAACTTGCTACTTTCTCTCTCCTCACTTCCAGGTTTCTTCGTGATTTTCTCTCTCTCCTCCTACTCGATGCTTTCTCCTTCCCTCAACTCTGCTCTCACTGCATCTACATCATGAGCTTCTTTTCCTCTGGGGGTGCTGCGCTTTTTCCCCTTCCTCACACGCTCTCTTTCTCTCTGCTCTTCATGAGAGACTTCAATCCACTGCAGCTAGGGCATACCTTGAGTAGCAACACAACGGAGACGAAAAATTCACCAAGCAAACGAAGAAGGTTCGTAATTTGCCACCGTTCCCGCAAAATAGAGGTGAGGAGAATTAAGCTCCAGAAAAGTGAAAGGCTAGCGCAAGCAACACCAACAAAAGAGGTGGCTACAAGATCAATGAAAACAAGCTCCTTCCCAAGAGAAAAACAGAAGTTGAGAATTGCACATGCTGTTCAATTCATACCAATTCTTGCAGCGTATTTAAACATTGTACTTGGAGTATTATATGTCGTTCTACATGGGTTTAGGGGGCATATCTGGAAGAAGGTGAGCTTAGAGAAGTGGCTGAGTTGCAATGCAGTGCCGATAGGGTTCATGCTTCAGGTGGCGAAGCATGTCAACAACTCCTCGTGA

Protein sequence

MPSLSSSPPRVQLATFSLLTSRFLRDFLSLLLLDAFSFPQLCSHCIYIMSFFSSGGAALFPLPHTLSFSLLFMRDFNPLQLGHTLSSNTTETKNSPSKRRRFVICHRSRKIEVRRIKLQKSERLAQATPTKEVATRSMKTSSFPREKQKLRIAHAVQFIPILAAYLNIVLGVLYVVLHGFRGHIWKKVSLEKWLSCNAVPIGFMLQVAKHVNNSS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo22761Spo22761gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo22761.1Spo22761.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22761.1.CDS.7Spo22761.1.CDS.7CDS
Spo22761.1.CDS.6Spo22761.1.CDS.6CDS
Spo22761.1.CDS.5Spo22761.1.CDS.5CDS
Spo22761.1.CDS.4Spo22761.1.CDS.4CDS
Spo22761.1.CDS.3Spo22761.1.CDS.3CDS
Spo22761.1.CDS.2Spo22761.1.CDS.2CDS
Spo22761.1.CDS.1Spo22761.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22761.1.utr3p.1Spo22761.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo22761.1.exon.7Spo22761.1.exon.7exon
Spo22761.1.exon.6Spo22761.1.exon.6exon
Spo22761.1.exon.5Spo22761.1.exon.5exon
Spo22761.1.exon.4Spo22761.1.exon.4exon
Spo22761.1.exon.3Spo22761.1.exon.3exon
Spo22761.1.exon.2Spo22761.1.exon.2exon
Spo22761.1.exon.1Spo22761.1.exon.1exon


Homology
[Close]
BLAST of Spo22761.1 vs. NCBI nr
Match: gi|902214726|gb|KNA17464.1| (hypothetical protein SOVF_079730 [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 2.300e-7
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 186 KKVSLEKWLSCNAVPIGFMLQVAKHVNNSS 216
           K+VSLEKWLSCNAVPIGFMLQVAKHVNNSS
Sbjct: 10  KQVSLEKWLSCNAVPIGFMLQVAKHVNNSS 39
[Close]
BLAST of Spo22761.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RES1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_079730 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.600e-7
Identity = 29/30 (96.67%), Postives = 30/30 (100.00%), Query Frame = 1 

		  

Query: 186 KKVSLEKWLSCNAVPIGFMLQVAKHVNNSS 216
           K+VSLEKWLSCNAVPIGFMLQVAKHVNNSS
Sbjct: 10  KQVSLEKWLSCNAVPIGFMLQVAKHVNNSS 39
The following BLAST results are available for this feature:
BLAST of Spo22761.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902214726|gb|KNA17464.1|2.3e-796.6hypothetical protein SOVF_0797... [more]
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BLAST of Spo22761.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RES1_SPIOL1.6e-796.6Uncharacterized protein OS=Spi... [more]
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BLAST of Spo22761.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22761.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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