Spo23042.1 (mRNA)

Overview
NameSpo23042.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionNOP56-like pre RNA processing ribonucleoprotein
LocationSuper_scaffold_45 : 1092394 .. 1096668 (-)
Sequence length2228
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTGTGGCCTTTCTTCTAGCTTTTTCCTGCTTTCCTTTTCTTTTCCTTTGTACTTCTTCTATCCGAGTTGTTACCTTCGCCCATCCCCTATGGTGGATTTTTTTACCCGATCTTTGTTTCCTTCGTAGTATTACATATTTTACTTTTCTAGGGTTTTGATTCTCGGAAGATATCAATAGAAAATCAAACTAAGATCTCAATATAAAGAGTTTAAGTGTACTATCTTTGGGAGGTTCTCCCTATTGTCACTTTTCTCGGTGGTCAGGTATGTACTGATTTTCTTTCTCTCTCTTTCTCCTTCCCAATTTTCAATTCGTAATTTTTTCAGTTGCATCTGAAATTCGATTGTTGAATATTGTATGATTTTTCAGTTTGGAAAAATCTTGTGTTTTTATGGGTATTGTTGGCTGTTTCTTCATAGAGGATCTGATCAAGCTTCTAAGTTGCCCGGTTTTGCACCTCTCCTAATCCCCTTTTCTCTCTAATCACAGGTACATTTATTGCCTTTCAAATTTATTGGTATTAGACTTCAAAATATTGAGTTTCATGTCGACTTTATGAATTTGGTTGTCTGGCCATTTTAACTTGATAACTTATTATTGCCATTTGTGGGATTTTTTGTGGGTTTTTGAGATATTTTCCTTTTATTTTATTATTGTTTAGAGAAACATTTAAAATTGGAAATCTGTTTAGGAATTGAATTAGGGTGGTTAATTTATTAGAGTCATACCAGTTATTGTGTTTTGTTATAGGTACCCTCTTTTGTTACTATTCTTATTTTATTAACCAGTGAACTTGACCTTTCGAAATTCTTCTGGTAGTCAAGATGAAAGCATTCGACAAATTTGAAAATACATTAGACGCAGCTACTACTGATCGACAGCAAGCCTGGCAAAGGATTGAGAAAATTCTTGAAAGCACACTGCTCCGGCAACATATTAGTTGTTGCTGATTCTAAACTTGGATATGCAATCAAGGAGAATCTGGTTGGTGTACATATAAATTTGACATATTTTATTTCTTTATGCTTGTGGTTTCATCTTCTAATATAAACTGTTTTATGGCCCTGTGCTGCAGCAAATTGACTGTGTTCACAATAATGCTATGATGGAGCTGATGAGAGGGGTAAGAAGTCAGTTGACTGAACTCATCTCTGGCTTTGGAGCTCAAGAACTTGTCCAATTAGCTTAGGTCTATCTCACAGCTTATCGAGATACAAGTTGAAGTTCAGTCCTGGTAAGGTCAATGATATCGACAAATTACTCTTTCATGTTTCATATTTCCTTTCTAATCCTGTACCTAATGTTTATGCAAGTAGACACTATGATTAATCACGCCATTGTATTGTTGGATGATCTTGACAAAGATCTTAATACAGAATGGTATGCCTGACATTTTCCGGAGCTTGTAAAGATTTTGCAAGACATTATAGTCTATGCCAAGACTATGAAGTTGATGTTGAATCGTGTTACTGCTGCGAAGTTGACTTTCTGTGAGGTAGACACCTCTTCATAGAATTTATAATCATCTTCATATGTCATTAGAAGCTTTGAAGATTAATGGAAATAGTAAGTAATGGCTTTGAAGATTTGTGGGGAAATAATTAGAAGCTTTGAAGATTAATCTATTAGATTTGTTTGCCAATTGTCCTTCTTGGATTTAATAAGTAATATCAAGGTTAAATGTTTACATCCGTGTTTCAGAGCAGCTAAACAATGTTTTATGTGTAACTTCGATTAGGGTTTACAATATCGATCATTTGATAAATGTTCAAGATGGGGTGCTCACTGCAGTCTTATTGTCAGTTGCCACATTGTTGTAAGAATATTTTTTAGTTTGTGCTGCCTTGATCTTGTGGCCTACTTAAGTTAAAAATAGATGCTTAAAGTAGATTATACTTCCAATTCTTCATGAATTTTAACATTATGCATTGTTTATGCATCTTCAATATTGAACTGGATAGGATAATGGAAAATAATTAGAAGCTTTGAAGATTAATCTACTCTATATGTCTGCCAATTGTGATTCTTGGATTTAATAAGTAATGTCAAGGTCAAATGTTTACATTTGATCATCGAAAGGTCAAATTGGGTTAAATAATTAGAAGCTTTGAAGATTAATCTACTACATATGTCTACTACTCTCTCTTGATGTTGAGCTCATTTCTAATGTTTAAAGTCTAAACTCTGATGATAGGCCGATAGCTGATAATTTTTTCGTTTGGGCATTAAATCTTTACTAGCACCCTTTTGATTACTTCATTATTGTGATTTAATCATCTTTATCAACTATTTCGAACACTCTTTTACACTGTACACTTCCCTTTACATGTGAACATTTGTTTATGTTTCTTCCGGATTATCAAAGTTTTTAATTGAATTAGTTTGAATATTTAGGTATTGAATATGGACTATGGAGAGGAAAGTTCCGAACTCTCTCTGCTTTCAACTACATGTTCCCACCATAAACACATTTTTGAGGTTTGTATAATGTCTTCTTAACATCCTGACTTTTTAATCATGTTATATTGACCTCCTTAAAACAGGTTAGTTGCTTGTAGTTTCTTCTTCCCACGAGAGATATATCCATGCAACTTAAGCTACTTGCAAGGTATATTTTAAATTCTGATCATAAGCAGTAACTTATCCAACAAAGTATTTCAGACTGCTATCCAAGGCAGTATTTGTTACTGCCAGTCAATTTTAGTTAATTGGATAATATTGCCCTGACTACAGTTGACAATGCAGCAATGAATTGGAAACGAGAAAGGTCATTACCCTTTATCATTTAGTACTAAGTACAGCCTAATTCTTAAACTAAAACTTGCAAAATTCTTTTTCAAATTGCAGGAACGTTTGGTTGACTTGGCAAATTATCAAGCAGAACCGGACCTTGTACAATTCTGCGTTCTAAGATTCCTCCCTTATTGAGTTATTGTTGCTTATGCAGTATTTCTTGCTATATGGACTCTTGATCAATCTGATTATCCATGATCAATATATTTTTCTTTACATTTGTGTTTTTTTTTATTACTAAACATTTACCCTGCTAACTTATCTGTTGAAGAATCCAACTTTAGTGCATTATACTTATATAAGGCCACAGAGCTCAAAGTTTTAGTAACTACCTGACAAGGTTTGCAATTAATTACAAGTAATTGCACACTGAAAGCAATTCACGAGAAGTACCTTCATGAAAAGTGATCCGCATGAAGAAGTCTTTTGATTAACTTTGCTGCTTGTTTACTTTCTATTGGTGAAATGGTTTTAGTCCTTGATTTTCTTTTATGAGCATTATTACGACATCGTAGATTAGTTTCTTTGCTTGATTACTTACTATTGGTGCAAATGGTTTCAGTCCTTGATTTTTTTTCTTATGAGCATTATTGTGTACCACTACTAAGGTTTCTAACATTAGCCCAGGGACGTGAAAGAAGGAAAGTCTCAAAATCCGCACCAAACAAGTTCTTATCAAGCTTGGACAACATCTCTCTCCGAGTGTAATGTCTTGTAGTGATGTCGTCGCCTTAAGCATTTGGATGATGCCGTCGAAGAATGAGTGATTTCATATATCTCTCTTGTCTTGTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGTTGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTACATTATTTCTCACTCCACCCCTATTAACCCACCTATCCCCTACTTCATACAAAAAATAATTAAAAATTCAAACCCCTACTCTCCCCCAACCCCATCTCTTAACCCACCTCCCACTAACTACATTAAAATAATATCCCACTATCAACTACTACCTATTAAATTAAATAAGTTAATTCAAATCCCTTAAACTCTGTGGCGGTCAAACCGGGTCGAGTATTCCGCGACGGAGGGAGTATACACCTTTTAGCTTGCTAATGTGTTTTCGATTTGTTTGTGGCACCTTCAATATGTAGTTCTAAATAGTTTCGTCTTACATGTCACGGAGTATGTGTAAATCTAACATTAACATACTCCGTGACATTTAGCATGTTTTATATTTTCCGTATCTCTTGCATTTACTATAATATTGTAAATATTCTTTCACGTAACATTTACGAAACAAATTTTTATAACTTGGGGATTGCGCACAATTGCCATTTAGCTAACCGTAAATGCTTGAGCAACAAGACGCCAAAAAATTGGACCTGATTGTAGTAATTACCTCGTTGCCCGAGCAATTCACAACCTCTTCTTCGCCAACAACCGC

mRNA sequence

ATGGCGAGTGTGGCCTTTCTTCTAGCTTTTTCCTGCTTTCCTTTTCTTTTCCTTTGTACTTCTTCTATCCGAGTTGTTACCTTCGCCCATCCCCTATGTTTGGAAAAATCTTGTGTTTTTATGGGTATTGTTGGCTGTTTCTTCATAGAGGATCTGATCAAGCTTCTAAGTTGCCCGACGCAGCTACTACTGATCGACAGCAAGCCTGGCAAAGGATTGAGAAAATTCTTGAAAGCACACTGCTCCGGCAACATATTAGTTGTTGCTGATTCTAAACTTGGATATGCAATCAAGGAGAATCTGCAAATTGACTGTGTTCACAATAATGCTATGATGGAGCTGATGAGAGGGATTTTGCAAGACATTATAGTCTATGCCAAGACTATGAAGTTGATGTTGAATCGTGTTACTGCTGCGAAGTTGACTTTCTGTGAGGTATTGAATATGGACTATGGAGAGGAAAGTTCCGAACTCTCTCTGCTTTCAACTACATGTTCCCACCATAAACACATTTTTGAGGTTTGTATAATGTCTTCTTAACATCCTGACTTTTTAATCATGTTATATTGACCTCCTTAAAACAGGTTAGTTGCTTGTAGTTTCTTCTTCCCACGAGAGATATATCCATGCAACTTAAGCTACTTGCAAGGTATATTTTAAATTCTGATCATAAGCAGTAACTTATCCAACAAAGTATTTCAGACTGCTATCCAAGGCAGTATTTGTTACTGCCAGTCAATTTTAGTTAATTGGATAATATTGCCCTGACTACAGTTGACAATGCAGCAATGAATTGGAAACGAGAAAGGAACGTTTGGTTGACTTGGCAAATTATCAAGCAGAACCGGACCTTGTACAATTCTGCGTTCTAAGATTCCTCCCTTATTGAGTTATTGTTGCTTATGCAGTATTTCTTGCTATATGGACTCTTGATCAATCTGATTATCCATGATCAATATATTTTTCTTTACATTTGTGTTTTTTTTTATTACTAAACATTTACCCTGCTAACTTATCTGTTGAAGAATCCAACTTTAGTGCATTATACTTATATAAGGCCACAGAGCTCAAAGTTTTAGTAACTACCTGACAAGGTTTGCAATTAATTACAAGTAATTGCACACTGAAAGCAATTCACGAGAAGTACCTTCATGAAAAGTGATCCGCATGAAGAAGTCTTTTGATTAACTTTGCTGCTTGTTTACTTTCTATTGGTGAAATGGTTTTAGTCCTTGATTTTCTTTTATGAGCATTATTACGACATCGTAGATTAGTTTCTTTGCTTGATTACTTACTATTGGTGCAAATGGTTTCAGTCCTTGATTTTTTTTCTTATGAGCATTATTGTGTACCACTACTAAGGTTTCTAACATTAGCCCAGGGACGTGAAAGAAGGAAAGTCTCAAAATCCGCACCAAACAAGTTCTTATCAAGCTTGGACAACATCTCTCTCCGAGTGTAATGTCTTGTAGTGATGTCGTCGCCTTAAGCATTTGGATGATGCCGTCGAAGAATGAGTGATTTCATATATCTCTCTTGTCTTGTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGTTGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTACATTATTTCTCACTCCACCCCTATTAACCCACCTATCCCCTACTTCATACAAAAAATAATTAAAAATTCAAACCCCTACTCTCCCCCAACCCCATCTCTTAACCCACCTCCCACTAACTACATTAAAATAATATCCCACTATCAACTACTACCTATTAAATTAAATAAGTTAATTCAAATCCCTTAAACTCTGTGGCGGTCAAACCGGGTCGAGTATTCCGCGACGGAGGGAGTATACACCTTTTAGCTTGCTAATGTGTTTTCGATTTGTTTGTGGCACCTTCAATATGTAGTTCTAAATAGTTTCGTCTTACATGTCACGGAGTATGTGTAAATCTAACATTAACATACTCCGTGACATTTAGCATGTTTTATATTTTCCGTATCTCTTGCATTTACTATAATATTGTAAATATTCTTTCACGTAACATTTACGAAACAAATTTTTATAACTTGGGGATTGCGCACAATTGCCATTTAGCTAACCGTAAATGCTTGAGCAACAAGACGCCAAAAAATTGGACCTGATTGTAGTAATTACCTCGTTGCCCGAGCAATTCACAACCTCTTCTTCGCCAACAACCGC

Coding sequence (CDS)

ATGGCGAGTGTGGCCTTTCTTCTAGCTTTTTCCTGCTTTCCTTTTCTTTTCCTTTGTACTTCTTCTATCCGAGTTGTTACCTTCGCCCATCCCCTATGTTTGGAAAAATCTTGTGTTTTTATGGGTATTGTTGGCTGTTTCTTCATAGAGGATCTGATCAAGCTTCTAAGTTGCCCGACGCAGCTACTACTGATCGACAGCAAGCCTGGCAAAGGATTGAGAAAATTCTTGAAAGCACACTGCTCCGGCAACATATTAGTTGTTGCTGATTCTAAACTTGGATATGCAATCAAGGAGAATCTGCAAATTGACTGTGTTCACAATAATGCTATGATGGAGCTGATGAGAGGGATTTTGCAAGACATTATAGTCTATGCCAAGACTATGAAGTTGATGTTGAATCGTGTTACTGCTGCGAAGTTGACTTTCTGTGAGGTATTGAATATGGACTATGGAGAGGAAAGTTCCGAACTCTCTCTGCTTTCAACTACATGTTCCCACCATAAACACATTTTTGAGGTTTGTATAATGTCTTCTTAA

Protein sequence

MASVAFLLAFSCFPFLFLCTSSIRVVTFAHPLCLEKSCVFMGIVGCFFIEDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGILQDIIVYAKTMKLMLNRVTAAKLTFCEVLNMDYGEESSELSLLSTTCSHHKHIFEVCIMSS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23042Spo23042gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23042.1Spo23042.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23042.1.CDS.6Spo23042.1.CDS.6CDS
Spo23042.1.CDS.5Spo23042.1.CDS.5CDS
Spo23042.1.CDS.4Spo23042.1.CDS.4CDS
Spo23042.1.CDS.3Spo23042.1.CDS.3CDS
Spo23042.1.CDS.2Spo23042.1.CDS.2CDS
Spo23042.1.CDS.1Spo23042.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23042.1.utr3p.2Spo23042.1.utr3p.2three_prime_UTR
Spo23042.1.utr3p.1Spo23042.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23042.1.exon.7Spo23042.1.exon.7exon
Spo23042.1.exon.6Spo23042.1.exon.6exon
Spo23042.1.exon.5Spo23042.1.exon.5exon
Spo23042.1.exon.4Spo23042.1.exon.4exon
Spo23042.1.exon.3Spo23042.1.exon.3exon
Spo23042.1.exon.2Spo23042.1.exon.2exon
Spo23042.1.exon.1Spo23042.1.exon.1exon


Homology
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|902193744|gb|KNA12372.1| (hypothetical protein SOVF_126570 [Spinacia oleracea])

HSP 1 Score: 103.2 bits (256), Expect = 4.800e-19
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 

		  

Query: 63  LLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           LLIDSKP KGLRKFLKAHCSGN L VADSKLG AIKE LQIDCVHNNA+MELMRG+
Sbjct: 62  LLIDSKPSKGLRKFLKAHCSGNTLAVADSKLGNAIKEKLQIDCVHNNAVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|971577051|ref|XP_015158347.1| (PREDICTED: probable nucleolar protein 5-2 [Solanum tuberosum])

HSP 1 Score: 100.5 bits (249), Expect = 3.100e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLAVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|460404312|ref|XP_004247627.1| (PREDICTED: probable nucleolar protein 5-2 [Solanum lycopersicum])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|697166044|ref|XP_009591833.1| (PREDICTED: probable nucleolar protein 5-2 [Nicotiana tomentosiformis])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|13623892|dbj|BAB41076.1| (MAR-binding protein [Nicotiana tabacum])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_126570 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.300e-19
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 

		  

Query: 63  LLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           LLIDSKP KGLRKFLKAHCSGN L VADSKLG AIKE LQIDCVHNNA+MELMRG+
Sbjct: 62  LLIDSKPSKGLRKFLKAHCSGNTLAVADSKLGNAIKEKLQIDCVHNNAVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: M1A6C0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006104 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.200e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLAVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IMC4_SOLCH (Putative nucleolar protein 5-2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.200e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLAVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: Q9AV96_TOBAC (MAR-binding protein OS=Nicotiana tabacum GN=MARBPF PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.800e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: K4CVT4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.800e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 56  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 115

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 116 AVMELMRGV 122
[Close]
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.400e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+IDC+HNNA+MEL+RG+
Sbjct: 64  LLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGV 118
[Close]
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.100e-14
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+I CVHNNA+MEL+RGI
Sbjct: 63  LLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGI 117
[Close]
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.500e-9
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 

		  

Query: 60  TQLLLIDSKPGKGLRKFLKAHCS-GNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           T+    +S    GL KFLK +C  G IL VAD KLG  I E L I+CVHN+A+MEL+RG+
Sbjct: 30  TEFYSAESARRMGLHKFLKNNCDDGEILAVADPKLGDIITEKLDIECVHNDAVMELLRGV 89
[Close]
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Match: AT3G05060.1 (NOP56-like pre RNA processing ribonucleoprotein)

HSP 1 Score: 84.3 bits (207), Expect = 8.100e-17
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+IDC+HNNA+MEL+RG+
Sbjct: 64  LLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGV 118
[Close]
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Match: AT5G27120.1 (NOP56-like pre RNA processing ribonucleoprotein)

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+I CVHNNA+MEL+RGI
Sbjct: 63  LLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGI 117
[Close]
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Match: AT5G27140.1 (NOP56-like pre RNA processing ribonucleoprotein)

HSP 1 Score: 62.8 bits (151), Expect = 2.500e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 

		  

Query: 60  TQLLLIDSKPGKGLRKFLKAHCS-GNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           T+    +S    GL KFLK +C  G IL VAD KLG  I E L I+CVHN+A+MEL+RG+
Sbjct: 30  TEFYSAESARRMGLHKFLKNNCDDGEILAVADPKLGDIITEKLDIECVHNDAVMELLRGV 89
The following BLAST results are available for this feature:
BLAST of Spo23042.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902193744|gb|KNA12372.1|4.8e-1987.5hypothetical protein SOVF_1265... [more]
gi|971577051|ref|XP_015158347.1|3.1e-1873.9PREDICTED: probable nucleolar ... [more]
gi|460404312|ref|XP_004247627.1|6.9e-1873.9PREDICTED: probable nucleolar ... [more]
gi|697166044|ref|XP_009591833.1|6.9e-1873.9PREDICTED: probable nucleolar ... [more]
gi|13623892|dbj|BAB41076.1|6.9e-1873.9MAR-binding protein [Nicotiana... [more]
back to top
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QYM5_SPIOL3.3e-1987.5Uncharacterized protein OS=Spi... [more]
M1A6C0_SOLTU2.2e-1873.9Uncharacterized protein OS=Sol... [more]
A0A0V0IMC4_SOLCH2.2e-1873.9Putative nucleolar protein 5-2... [more]
Q9AV96_TOBAC4.8e-1873.9MAR-binding protein OS=Nicotia... [more]
K4CVT4_SOLLC4.8e-1873.9Uncharacterized protein OS=Sol... [more]
back to top
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NOP5B_ARATH1.4e-1567.2Probable nucleolar protein 5-2... [more]
NOP5A_ARATH2.1e-1469.0Probable nucleolar protein 5-1... [more]
NOP5C_ARATH4.5e-953.3Putative nucleolar protein 5-3... [more]
back to top
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G05060.18.1e-1767.2NOP56-like pre RNA processing ... [more]
AT5G27120.11.2e-1569.0NOP56-like pre RNA processing ... [more]
AT5G27140.12.5e-1053.3NOP56-like pre RNA processing ... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10894NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58coord: 64..118
score: 5.0
NoneNo IPR availablePANTHERPTHR10894:SF1PROTEIN NOL-5coord: 64..118
score: 5.0