Spo23172.1 (mRNA)

Overview
NameSpo23172.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_193 : 871297 .. 876203 (+)
Sequence length369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATGATAATGGCGGCCCTCCAACACTCTTTTGTTTTCTTCTCTTCCTAAATCACGTGTGTTTCTAGGTGTAATTCTTTTTTTCTCTTTTTTTTTTTTTTTTTTTTTGGCTTTTAAACAACAAACCAAGAATGCTCAAATGGTGGGCCCAAAGTTGAAACACACCCCCTTTATCTATTGGATTTTTTTTTATAACTTTAACCCTTTTTTTTCCTTCTAAGCATGATACTGAGAAATACCTACTTGTATGCAATTAATCTCGCTTATAATTGATGCCATAATTTGGAATTTTGACGAACATGATCCGAAATTTCAATAAATTGACACTTCGTACAAATTTAGGCACCCCTGATAATCAAGGTCCGTTCACGCACCTCGTATTTCATGGACAAACTCAATGGATTTTATTCGATATGAAAGCATTCTTTATGCTATAGTACCAAATAAGATGCCCCCAGATTTTACGTTGTTCCATACACTAACTTGAAATATTTTCTTTATTTTGTAGGAATAAAATCACCAATGTTAATTTTAAGTATCACGATACTCCTGGAGGCATTGTCACTGATGGCAATGCGGTCGATGGAAGAAACTTTCGTTCACTTCCTCCTATGACTGGTCCTTTTGCAAAAATCAATATTCGTACAGAGTTTTCGAGCCCGAAAAGCTAGTACAAGGAGTTAAATGATATCAATGTATTTGGCGGCAAAACACCTAAATCTGTCCTTCTCGCCCCACGTCACTGTCCCTGCGATGAGGATTGTTCCTTCCAGACGCGCTTCAAAGTTCATTGATGTGACATCCTCCTAGCCATGGTTGGTGCTAGATAACGATGATCGATTTGGTGCTTGAAAATCTTGATGTTTGAAATGTTAAGTTGATCCCGGTGTTGAAGAATTTTGGCTGAAGGTTGGTGCATATAGATTTCTCCAATCTTCACATTCAACATTTTGGCCGGCCTGCATGGTGCTTGGCGACTTTTGTCCGCTCTTTAAGAAAATTTGGAGAAGTTTTGGTAATTTTGTGATGGTGCTTGGCGGCTTTCTCCATCCTTCAATTATCTCTTTTGAACATTTCTAGTGCTTGGAAGCTTTCCCCAGATTTCCATGTAGTTTTCGCGAACCCCTGGTGCTTGAAAGCTTTCTCCAGATCTCTGGCCCGAGGTGTTTGGTGCTTTTGAGCTTTCTCCAAACTTTAAGTAAAGTCGGGTCATCATTTGACAAAATTAATTTTGGAAGACAAAGTAAAACAATTTATTTGTTGGTTACTCATGCCCCTGTTGTCGTACTTCATTTTTAAAACATTTTGTGTTTTTCAAAACATATGTACTCTTTTACTTTTTTTTTATTTTTTTATGGAATACAATTTCAAAATTTAAATTATACTCCAAATCATTTTTTTCTCTTTTGATGTGGCTGCCCTAGCTTGAACTTTTTCATTATCCAAGATGGCTACGTATCAAAATAAGTGATTTTTTTCACTTTTTTTTTGTTAGACCAAGCCAAACGTAGTTCCAAACTTTTTTTTTGTTATGCAGTTTAGGCTCTTGCTTAGGAGTTTTGAGGACGATTTTTTTTTTCACCTTTGCCCCCAGGATCATTGTTGAAACTTCTTGCAGACTTGTGGATCCAAATCGTCGAAGTCTCAACAAAAGGCCGAATAATTTGAATTTTCACCATGGTTGGCTATCGAGTTTTCCATTTCATGAGCTTGAGTTACCAAATCCTAAAAAATTTTAGGCTTGATTCCTTGCAAGATGTAGACCAAGTCCCAATGCATGCCTTGGATGCACATGTTGATTGCAGAAGTTTCGTGCAAATGATCCTTGCATTGAAGACTTAGTGTCCTCCAGCGATCGATGTATTCCACGATTGATTCATCCTCCAACTGGTTTGTTTGTGTAAACTCCATCATGCTGACAAGACAACAAGTGCTTATGAAGCGATTAAGGAACAATTCTTCCATCTGGTCCCAGCTATCAATCGATCCAGCTTCTAATTCGTCGGCGTACCAATCAAAGGCAACATCTTTTAACGATCGAACAAACTGCTTCACGAGCAAGTCTCCTTCGGTGCCTGCGTTGTTACACGTTTCAATAAAATGCGCGACATGTTTCGGATTGCCTTTTCCACCAAACTGCAAGAATTTTGGAGGTTGATAAGCGTTAGGCATCTCCAAGTCATCAATCCTTTTTGTGTACGGCTTTATGTAACAGCCACTTTCGTTTGGATCTACGCCACATTGGTGTTTGATAGTCTTGGCTATCATATCTTGAATTTGACGGAAGCAGAACGAATCACCATGGCACGTTCTTCTCCTTCTTGTCTTGGACTTCGCAGTTGACTTAGATTCATCGCTTTTGCCTTCACTTTCGGTTTCAGCATTTTTGTATGATTCACCAATTGGACGTTTTTCAAGCTTCTTGGTCAAATTGGCTATTTTTTCTTCTTGCCGTTTGATTTGGGCTCCCTTTTCTTCGTTGTTCTTGACAAGTTTTTCAAGGAGTTTCTTCATGTTCGCCAATTCTTCCTCAATGGTGTTTGCTTCAATCGCCATGACATTTACAATGACGACGTCTATGCCTCCATTGCTTGGCTCTTGGAATGAACTTTGGCCCGCTCCATTTCTTGGCTCTTGTAACGAACCTTGGATTGATGTAGAAGAAAATGACTCGTTGCTTTTGTAGGCTCCTCTTAGATTGAAGATTTGATTAGCGAACATGGATTTCATCACTGCCGTTATGGTTGGATTAGCTTGCTTAATCATTCTTCGATTTGCACCTTGAAGTTTCTTCGGTATTTTGATTTGCGGAGAAAGAGATGAGAGGTAGAAATCGTCCCACCGAGCGTGCCAAATTTGTAAACACAAATTTCAGAGTCTGCAAAATAATAAACTCAAAATAATGTGAACAAAATAACTTTTATTGATTTTTGATGTATTTGGGTACAATCTCCAATGTTTGTTCCTCTGATTCGATCTCCACTTCAAATTTGACTTGACTCACGGACTTGTTTGATTTGGTTCACGGACTGGTTTTGATTTGTACTTGAATGAGGGCCTTCGGCTTGATCTCGTTCAAGGATGTTGATGTCGAATTGAACGACACGTCACTTTTGTATGCTTGTTGTTCTTCGATCTACATGAGAGATTTGATGTTGTTCACGAACCACGAACCAATATGATCTTCTTGAATAAGAGCCTCCAGACTTGAAGGGTGTTGATGTAGAATGGAACGACACGTCAATTTTGTATGCTTGTTGCTCTTCTTCTACGTCCAGGAACGTATTTGATCTTCTTGAATAAGGGCCTCCGGGCTTGATCTTTTCCAAGGTCGATCTTCTAGAATGGAACTACACGCCTTCTGGAACGTTTTTTGTTCTTCTTCTAGGGAGAGAATGTGACTTGAATGGCAGAGAGAGTATTTGAGAGTTTAGGTTTTGCCGTCTGTTTTCTCCCCTCCCTCTAAAATGAGGTAAGGTACTCTATTTATAGAGTAAAGGGGATTTTAGGGTTTTTATGCACACTAGGCTTTCTTTAACTGGACTTGGTAGTCATGGCCCATTAAATACTCTTGATCCATTTTATTGGATTTTAACCGTAAATGAATTGGTTTAAAATAACCAAAATATGCAGAAATTAATTTGTATAACCAAATTAATAATTTCATTGACCGTCAAATAATTACCGAGTCAATATTTTGACTTTTGACCCGAATAACATCCAACGTGGCACATAAACAATTTTTCCGTGCCTACAGTAACGTAACAAGATTTCACGGAATGAAAAATCCAAAACAAGTTACAGAACGACCGTTACGTAACAAGTGGGTCTATGTAGCATATTCCACTGGCTGTGATGGTGGAACTACAAACAAGCGAGGATTTTATTGCATCTATCGGTATCCTTCTTCTGTTGTATTCATGTAATTATGACTTCAGTTGATCACTTGCTCTTATCTCAAGTAAGTCTGAGCTCTTATTCTATGAAAAGAAACTCTGGGACAATCAATGCATTTAGTGATTAAATAAACAACAAAACTTTCAAAGAAAATAAATTATTTAGTCTCTGATGGGATGGGGTATGGCTGTATGCGGAAAGCATCTTAAAAGTTTGCATATCATGTACTTAAGTCCTTTTCTTTGGTTCATCTTTCATTTAAGGGGATTGAAGAAGTAACTTTAGCTTTATCCCAAGTACTTGGACTTGATTTTTGGACATCTGAAAAATATACTGCACTGTTGGTACATAACAAGCCTTTAGTTTCTATTTCCATTTCTTTAAAGAATTGACAGCTTTCAGTGAACCTCCTTAAGTTGACTGGCTAACCATCATGTAATAAGGTTCAAGCTTATCTTGGGTTATTTACAACTTGACAATCAGCTTCCCTTGACAGAAATGCCTGTATTACTAGCACCTGATCATATGCTATCTGTTAAATTGTTGCACCTGATCATGTGCTATCTGTTTACAACTTGACAATCAGCTTCCCTTGACAGAAATGCATGTATTACTAGCACCGTATCATAAGCTATCTGTTAAATTGTTGCACTGTCGTCCTAGAGCTAATGTTGTATTTGGGGGGTTGTGTTACTTCAGGTCTGTAGAGGGAAATGATGATAACAAAGAAAACGAGGAAGATGACCAGGCAAAAGAAAATTTGAAGACGAGGACAAAACAAGATGAAGGTTTAGTCGGGTCTCAACCTGTGTCAGATGCGTAGTATAAGTGGATCTAATCATAATAGGACCCTCTTCTGCAATACAAACATTGCCCAACTAGGCAGTATCGGGAAAGTTAGTCTAACTAGAAACTGTGTTAGTACCTAACAGAGTCTGGCAGAAGTTCTGGCCATTTTGTGAAGCTGATTGTAATGGTATAATCTAATTTATATTTTGTTCTTTTG

mRNA sequence

ATGGCTGATGATAATGGCGGCCCTCCAACACTCTTTTGTTTTCTTCTCTTCCTAAATCACGTGTCTGTAGAGGGAAATGATGATAACAAAGAAAACGAGGAAGATGACCAGGCAAAAGAAAATTTGAAGACGAGGACAAAACAAGATGAAGGTTTAGTCGGGTCTCAACCTGTGTCAGATGCGTAGTATAAGTGGATCTAATCATAATAGGACCCTCTTCTGCAATACAAACATTGCCCAACTAGGCAGTATCGGGAAAGTTAGTCTAACTAGAAACTGTGTTAGTACCTAACAGAGTCTGGCAGAAGTTCTGGCCATTTTGTGAAGCTGATTGTAATGGTATAATCTAATTTATATTTTGTTCTTTTG

Coding sequence (CDS)

ATGGCTGATGATAATGGCGGCCCTCCAACACTCTTTTGTTTTCTTCTCTTCCTAAATCACGTGTCTGTAGAGGGAAATGATGATAACAAAGAAAACGAGGAAGATGACCAGGCAAAAGAAAATTTGAAGACGAGGACAAAACAAGATGAAGGTTTAGTCGGGTCTCAACCTGTGTCAGATGCGTAG

Protein sequence

MADDNGGPPTLFCFLLFLNHVSVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23172Spo23172gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23172.1Spo23172.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23172.1.exon.1Spo23172.1.exon.1exon
Spo23172.1.exon.2Spo23172.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23172.1.CDS.1Spo23172.1.CDS.1CDS
Spo23172.1.CDS.2Spo23172.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23172.1.utr3p.1Spo23172.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo23172.1 vs. NCBI nr
Match: gi|902188150|gb|KNA11075.1| (hypothetical protein SOVF_138500 [Spinacia oleracea])

HSP 1 Score: 78.6 bits (192), Expect = 4.300e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 22 SVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA 62
          SVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA
Sbjct: 34 SVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA 73
[Close]
BLAST of Spo23172.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUZ3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_138500 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 3.000e-12
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 

		  

Query: 22 SVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA 62
          SVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA
Sbjct: 34 SVEGNDDNKENEEDDQAKENLKTRTKQDEGLVGSQPVSDA 73
The following BLAST results are available for this feature:
BLAST of Spo23172.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902188150|gb|KNA11075.1|4.3e-12100.hypothetical protein SOVF_1385... [more]
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BLAST of Spo23172.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QUZ3_SPIOL3.0e-12100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo23172.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23172.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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