Spo23179.1 (mRNA)

Overview
NameSpo23179.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 52638878 .. 52641235 (+)
Sequence length1279
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGACATTGTAATTGGCCTATTTTGTGGGTCCCTTTCCTTTTTTATGGTTAGGTTTTCTTTGATTTTGTTAAATTGTTAAATGTATTTTGTAAAATGTAAAATTATTGTTTGAAAATGATTCAGATACTATTTGCTTTTCAAACAGTGACTAATTAGCTGATTAATTAAGTATTTCTAAGGGGGCGTTTGGTTGGGGGTATTCTGGAAAGGGAAAGGGGATGGGCTGAAATGATACCCTTTGTTGTTGTTTGTTAGACCATTTTCGTGATTCCCTTTACCCCTTTTTATTTTTGGGTTCACCCAAAATTGCTCTAAGTTGATTACACCCCCCCCCAAGGGTTTCCCATTCTGATTCCCCACTTCATTTCCCCACCCTCCTTCTCTCTCCTCTAGCCCAGAACTTTAACAACAGCACCAAGGGAAGATGCCACACTCACGTTGCCGGCGACTACTGCTGTGAAAATCCGTCCATTAACTCCGATCACTTGCTTATCTCCGGCCGCCGTCGAGGTATGTTCCGTCTCTTCCTTTCTCTCTCCTCTTTCTCTCCTTTTCTTTCGTTTTGCGTTCTTAATCCGACCTCCGGCGTGTGACCTCGACAATTTGCACTTAATTTTTTATTGGTTTATATATTTTTCAATTTTCCACCTGATTTGTAGCCCAAAAGATCCATAAATTCAAATTACAAATTTATAAATTCACTTTTTTTGTTGACAGCCTATAAATTCACTATACTACGAGGTTTCTCTAATACGGAGGGATTTTAGCATAGCAGAACAATTTCAAAGCAGAAGTACAACAGACCTTTGAAGCAGCAACAATGGCGAGCACAAAAGTTCAAAGGATTATGGCCCAGCCTAAATTCACTGTCTTTTCACTTCCATTCTCAATTTTTGTGTTTTTATTCTTCTTCTTCTTCAATTTATAATCTAACTCATCTATGTTGTTAATTGGGTTTGATAATAGATCCTATAATACCGCAGATAAATTGAATAAAGGAAAGCCATATATTGTAAAGTTAATTGTGTTCTTAATTGCTTTGTTAAATGCTACGAATGTCTTATATGTCTGTTCAATGAAAAAATTCACAATAAAAGTCTATTATGGTGATTAGCTGTCATATATTCTTCTTCTTCTTTTTTTAAAAAAAATTAAGAAGAATTGAGGAAGAAAATTTAATCATATTACTTGTATGTTTTAAACAGGTTCTTCATAAAGACATGTTTATTAATAAATTATACATTTGATTCCTTGGTTTGAACCAAACAGCCACAAAGGGAATCAGGGTGTATTTCATTCCGTTTCTGGGACATACCCAAACAGGTAGGGGGAATCAGGGTCATTCCATTCCTTTCTCTTTGATTCACTTTCTGCATTCCATTCCGTTTACCCTGCGCGAACCAAACACACCCTAAAAGTAATTAGCCCGCTTCTAATTAATTTTGCATCTTTGCCCTGAAACCCTGCCTCAGGAGGATAGGAGCAGCGATAAAAGGGGAGAGGGCAGTGGCAGAGGAGGAGGGAGGTTGCAGTAGAAGGTGGTCAGCGAACGAGAATAAACCATTGATGGTCGGTGAAGGTGGGTTGTTGACGGCACGATAAGGTAAGGGAAGTAGTGAGGTGTTGTTCCCAAACTTCTCAGGCAGTGCTCTTAACTTCCCTGAAATCTTGAAGAAGAACGATAACCTCCGCTTAAGATCAATAGGTTACCGAAATCCGACCTGAAAATGGCGGGAACCGAATCAACAAATAGTTATATGCCTCCCAAGGCGGCGTTGATGAAGAAACGCGGCAAACTCGCCGGTAATGCCCTAGGAAACCAATTCTTTGCCTCCCAAGGCGGCATTGGTAGTCTCTTCAACCTTCCTAACGAAGCCGGCCGGAAGTACGAGTTTATTTGCAGCACCACTCCCTCATACCACCACTACTTTAGGAATCGACGAAGGAGTGTGAAAGTTGTCGGAGCCGGCGAACAGGGAAGGGGAATTCGATGTAGAGGTAGAGAGAGGAGGCGGAGAAGCCACCGAGCGAGGCATGGAGTTGAGCAGAGCAGAGGAGTTGAAGACAAAGTTGACTTTTGTCGGAACTGGCTTTCGGCAACTATTTCGGTGATGGATTTGCAAGGAATGCGACCGGAGAGGAACCAGTCCGGGACTGGACAAGAGAGAGTTAGCTTTTGGGTGAAATAGATGTTGGTAGAGTAAAAGCTTTTTTTTACTATGTCTATAATTAAAGTTGGGCATTACCTAATACTCGTACATTTTATATATATTATATAAACTCGGAAACTACTATCATTGTTGTTCATAAACGACTTGAAATAAAATTGCCATGGTTTTTATTTCACTCCTAT

mRNA sequence

ATGTGTGACATTCCCAGAACTTTAACAACAGCACCAAGGGAAGATGCCACACTCACGTTGCCGGCGACTACTGCTGTGAAAATCCGTCCATTAACTCCGATCACTTGCTTATCTCCGGCCGCCGTCGAGCCTATAAATTCACTATACTACGAGGTTTCTCTAATACGGAGGGATTTTAGCATAGCAGAACAATTTCAAAGCAGAAGTACAACAGACCTTTGAAGCAGCAACAATGGCGAGCACAAAAGTTCAAAGGATTATGGCCCAGCCTAAATTCACTGTTCTTCATAAAGACATGTTTATTAATAAATTATACATTTGATTCCTTGGTTTGAACCAAACAGCCACAAAGGGAATCAGGGTGTATTTCATTCCGTTTCTGGGACATACCCAAACAGGAGGATAGGAGCAGCGATAAAAGGGGAGAGGGCAGTGGCAGAGGAGGAGGGAGGTTGCAGTAGAAGGTGGTCAGCGAACGAGAATAAACCATTGATGGTCGGTGAAGGTGGGTTGTTGACGGCACGATAAGGTAAGGGAAGTAGTGAGGTGTTGTTCCCAAACTTCTCAGGCAGTGCTCTTAACTTCCCTGAAATCTTGAAGAAGAACGATAACCTCCGCTTAAGATCAATAGGTTACCGAAATCCGACCTGAAAATGGCGGGAACCGAATCAACAAATAGTTATATGCCTCCCAAGGCGGCGTTGATGAAGAAACGCGGCAAACTCGCCGGTAATGCCCTAGGAAACCAATTCTTTGCCTCCCAAGGCGGCATTGGTAGTCTCTTCAACCTTCCTAACGAAGCCGGCCGGAAGTACGAGTTTATTTGCAGCACCACTCCCTCATACCACCACTACTTTAGGAATCGACGAAGGAGTGTGAAAGTTGTCGGAGCCGGCGAACAGGGAAGGGGAATTCGATGTAGAGGTAGAGAGAGGAGGCGGAGAAGCCACCGAGCGAGGCATGGAGTTGAGCAGAGCAGAGGAGTTGAAGACAAAGTTGACTTTTGTCGGAACTGGCTTTCGGCAACTATTTCGGTGATGGATTTGCAAGGAATGCGACCGGAGAGGAACCAGTCCGGGACTGGACAAGAGAGAGTTAGCTTTTGGGTGAAATAGATGTTGGTAGAGTAAAAGCTTTTTTTTACTATGTCTATAATTAAAGTTGGGCATTACCTAATACTCGTACATTTTATATATATTATATAAACTCGGAAACTACTATCATTGTTGTTCATAAACGACTTGAAATAAAATTGCCATGGTTTTTATTTCACTCCTAT

Coding sequence (CDS)

ATGTGTGACATTCCCAGAACTTTAACAACAGCACCAAGGGAAGATGCCACACTCACGTTGCCGGCGACTACTGCTGTGAAAATCCGTCCATTAACTCCGATCACTTGCTTATCTCCGGCCGCCGTCGAGCCTATAAATTCACTATACTACGAGGTTTCTCTAATACGGAGGGATTTTAGCATAGCAGAACAATTTCAAAGCAGAAGTACAACAGACCTTTGA

Protein sequence

MCDIPRTLTTAPREDATLTLPATTAVKIRPLTPITCLSPAAVEPINSLYYEVSLIRRDFSIAEQFQSRSTTDL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23179Spo23179gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23179.1Spo23179.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23179.1.exon.1Spo23179.1.exon.1exon
Spo23179.1.exon.2Spo23179.1.exon.2exon
Spo23179.1.exon.3Spo23179.1.exon.3exon
Spo23179.1.exon.4Spo23179.1.exon.4exon
Spo23179.1.exon.5Spo23179.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23179.1.CDS.1Spo23179.1.CDS.1CDS
Spo23179.1.CDS.2Spo23179.1.CDS.2CDS
Spo23179.1.CDS.3Spo23179.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23179.1.utr3p.1Spo23179.1.utr3p.1three_prime_UTR
Spo23179.1.utr3p.2Spo23179.1.utr3p.2three_prime_UTR
Spo23179.1.utr3p.3Spo23179.1.utr3p.3three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo23179.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23179.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23179.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23179.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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