Spo23220.1 (mRNA) | SpinachBase

Overview


Name	Spo23220.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L21
Location	chr6 : 45080977 .. 45084265 (-)
Sequence length	773

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCACAATTCGGCCCAATCCAAAATTGTCCATTTCAAGTTTTCAACCCATTAATAAACCCCTAGCGCTCATTTCACTTCTCAGCTCTCAGTGTTCTCGCCGCCGTAACAGAGTAAAGAAGAGAGAGAAAGGGAGAGGAGAGAGAACACAATGCCGGCCGGTCATGGTGCTAGGGCAAGAACCAGGGATCTGTTCGCACGGCCATTCAGGCGAAAGGGTGTGATTCCAATCTCTACTTACCTTCGTACTTTCCATATCGGTGAGTACGTTGATATCAAGGTTAATGGCGCCATTCACAAGGGTATGCCCCACAAGTTCTACCATGGTCGTACTGGCCGTGTCTGGAACATCACTAAGCGTGCTATTGGTGTTGAGGTCAACAAACAGGTATATCATCTTTCATTTCCCCTTTTTTTAATTTGTTTTCGCCTGATTTTGCTGTATAATTGCGGTTTTATTTATGGGTTTCATGTGGTTGATGTTGGCGATGATTTAGGTTATTTTGGGTTTATTTTGTATTGTAAATGGAGGAATTATGGTTTGATTTTGTTGTAGAAAATTAGAAATGCTGAAAATTTCTAGGTTAAACTGTGATTTGTTTGTTTGGTTATGTTTGATATGAGTGTTCGGAAAGGAGCATATTAGTTTGTTTTAATTTAGGGTTTTGAAATTATTGTATTGGATTTTGATTTTTTGGCATCCAAAATGATAAGAGCATCTCTAATTGTTGTAGCTAGTGACTAGCTTACAATTTTTAGAAATTTCAACCTATTAGCTTGATCATTGTTGTTCAAACGATAAATTAGCTTGGCCAAGCAAATTAGCTTAAATTGGCCAATGAAATAATATTAAATAAAATTTTATTTAAAATATCGAGTGACAAATATGACTATATTAATATCAAGCTAATAGCTATTAGCTAATCATTGGGGTACCAACTCGCTAAAAGCTAACCATTTCACATAAAATGATTCAAATTCCACATTGAACTGTACTCCGCACACCATAAATTTAAATCCAATTGGTACTTTCCTCTGCCTATAATTTAAATTTGTGGTGTTTGGTACGATTCTATGTGAAATTTGAATCATTTTATGTGAAATGTTTCAAAAGGGTGGTTTGGTGGTTGTACGAAATTGAATGGTTAAGTGAAGAGTTGTATCAAGAGTTGTGCATATTGTGAGCATGCCTAAACCAAATTTACGTAAAGGACAAACATTAATGCATGTTTTGTTGTGAAATTATTTTTGGATTTTGATTTTTTGGCATCCAAAATGATAATGAATGCTATCGAGTAATAACTATGGTTTCGAATCAATTCTGGAGAAAACTGCAACTTTGTTAGAAAAGGAGATAGAAATGAAGCTATACGGAATAAATCTGGGATGTTAGAAATGAAGCTATATGGAATGTTTTAATCCGTTCTGTTACTACAGTAGTGAAGGAGATAGAGCTTGGCTTGTATCCTTGGGATAAAAAGTTAGTTTGGGAGTTGTAAACTTGTAATCGGTTGTAACAGTGGTTTAGTCCTACTGCTGCTGTTGGCAGGTCCCGGAGATAGGTGTCCTTCTTAGAAGGTTTGTCCCTCTCGTGGACGAACCATGTTTGTATGAGTGGATGATTGTTTTGGCAATAATATTACTTAATTACCAAAAAAATTAGTAATAATGGCTTTCATAAGAATTTTTGGTTGGATTTTAGGGTCTGTTGGATTCAATATGTTATGGATATCATGACGGTTATATTTCTAATGGTGAAATCTTGTGGTGTTTTGGCTTGGAAGTTATACGAACTTGAATAATAATAATGTTGATTTTGCTTGCTGGGTTTTGTTTGAGTGAGCTATCTTCTGAATTTGGGTATGATAAGTTCTAGGAAAACTGACTATAAAATCCATGCTTACTCTCAGTCTTTTGACAAGTTGCTCACCGAGATATAACGCCTTGAACATCTTTGGCCAGTAGAAGTTTTCGTTGAGATGTCAAGTGTCTTGTGAATACCAAAATGACTAGCAATTTCCCCCTATCCACTTTCCTTGTTAGCAACTCATGAACTCCAATAGGGATTTTGATATGAATCTAAACCCCTTAGACTGGTTCGAGGCGATAGTGAAATGGCTCGTTTCCCTTAATTTTATTTGCATTTTGTGTGGGTTTAGTGCATATCGAATGTGATGAAATATTTAGGGTGTTAGGGTTGTGGAGGTGGTACCTAAGTTGTCTTGTTTCATCATTCAATGATTGCAATCCGTGTTCTGGTGAGGGGGATTGGTTGGTTATCTCTGTCATTGTGTATCGCCTGTTGGTCGCCAATTTCAAGATATATTGATATTTGGTGATTTTGGTTGTTGAACATACCCATCGCTGCAAGAGTAGTGCATTTGAGCTTCCAATATATGAAACCAAATTTGTAGTTGTAAGGTCAATTTGTCAAAATTGAATCTATATGTTCTGTGCCCGTCTGGAAGTGAATATGTTAAAGGTGATTTTGGTTAACATGAAAAACCACGGGAAGTATGATTTCCTAGGAATTGGAAGATTGTAGGATTGTTTGGTTGATGACAAAAATATGGGAAGTCTTACTTCCTAGGAATTTCCACTCCCTACAAAATAGTGGAAGTTGTTTACCTAGGTTCCCGTGGGCAAGTTAAACTTCCCATGGGAAGTAAATTCTCATGTTTAACTAAACAACATCACCCAATTCCTAGGAAATGCTTTTACATGGGAAAACCTTCTTCCCATAAAATCGAATCCATGTTCTAGGCATCAACCCAACCTTCTTGTTTGATTATCCTTTACCAAATGTGTGATATCTTACCGTATGGTGGTTGCTCTTTCTTTAGGTGGGCAACAGAATCATCGCCAAGAGGATTCACGCACGTATTGAGCACATCCAGAGTTCACGCTGCCAAGAGGAACTCAAAAATAGGATAAAGAAGAACGATGAGCTCAAAGCCGCTGCAAAGGCCAGAGGTGAAATTATCAGCACCAAGAGACAGCCCCAGGGTCCCAAGCCCGGGTTTTTGGTCGAGGGTCAGACCATTGAGACTGTTACCCCTATTCCCTATGATGTTACCAACGACCTCAAGGGCGGTTACTAAGTCCTGTCTGTTACGGTTTTGCTTGTTATCTCGCTTTGGCTTTTAGGTTTCAGGTGATTTTAACATTGTGCCTTCAGGTAGAAACAGTACTGTAGACATTGAGCAAAATTGTGCAGAAACGAAAGAATTCTTGTGTTTTTATTTAGAGGAAGTGAAGGATTTTGTTCAGAATAACTCATCTACTTTTTAA

mRNA sequence

AGCACAATTCGGCCCAATCCAAAATTGTCCATTTCAAGTTTTCAACCCATTAATAAACCCCTAGCGCTCATTTCACTTCTCAGCTCTCAGTGTTCTCGCCGCCGTAACAGAGTAAAGAAGAGAGAGAAAGGGAGAGGAGAGAGAACACAATGCCGGCCGGTCATGGTGCTAGGGCAAGAACCAGGGATCTGTTCGCACGGCCATTCAGGCGAAAGGGTGTGATTCCAATCTCTACTTACCTTCGTACTTTCCATATCGGTGAGTACGTTGATATCAAGGTTAATGGCGCCATTCACAAGGGTATGCCCCACAAGTTCTACCATGGTCGTACTGGCCGTGTCTGGAACATCACTAAGCGTGCTATTGGTGTTGAGGTCAACAAACAGGTGGGCAACAGAATCATCGCCAAGAGGATTCACGCACGTATTGAGCACATCCAGAGTTCACGCTGCCAAGAGGAACTCAAAAATAGGATAAAGAAGAACGATGAGCTCAAAGCCGCTGCAAAGGCCAGAGGTGAAATTATCAGCACCAAGAGACAGCCCCAGGGTCCCAAGCCCGGGTTTTTGGTCGAGGGTCAGACCATTGAGACTGTTACCCCTATTCCCTATGATGTTACCAACGACCTCAAGGGCGGTGATTTTAACATTGTGCCTTCAGGTAGAAACAGTACTGTAGACATTGAGCAAAATTGTGCAGAAACGAAAGAATTCTTGTGTTTTTATTTAGAGGAAGTGAAGGATTTTGTTCAGAATAACTCATCTACTTTTTAA

Coding sequence (CDS)

ATGCCGGCCGGTCATGGTGCTAGGGCAAGAACCAGGGATCTGTTCGCACGGCCATTCAGGCGAAAGGGTGTGATTCCAATCTCTACTTACCTTCGTACTTTCCATATCGGTGAGTACGTTGATATCAAGGTTAATGGCGCCATTCACAAGGGTATGCCCCACAAGTTCTACCATGGTCGTACTGGCCGTGTCTGGAACATCACTAAGCGTGCTATTGGTGTTGAGGTCAACAAACAGGTGGGCAACAGAATCATCGCCAAGAGGATTCACGCACGTATTGAGCACATCCAGAGTTCACGCTGCCAAGAGGAACTCAAAAATAGGATAAAGAAGAACGATGAGCTCAAAGCCGCTGCAAAGGCCAGAGGTGAAATTATCAGCACCAAGAGACAGCCCCAGGGTCCCAAGCCCGGGTTTTTGGTCGAGGGTCAGACCATTGAGACTGTTACCCCTATTCCCTATGATGTTACCAACGACCTCAAGGGCGGTGATTTTAACATTGTGCCTTCAGGTAGAAACAGTACTGTAGACATTGAGCAAAATTGTGCAGAAACGAAAGAATTCTTGTGTTTTTATTTAGAGGAAGTGAAGGATTTTGTTCAGAATAACTCATCTACTTTTTAA

Protein sequence

MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGRTGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAKARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGGDFNIVPSGRNSTVDIEQNCAETKEFLCFYLEEVKDFVQNNSSTF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23220	Spo23220	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23220.1	Spo23220.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23220.1.utr5p.1	Spo23220.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23220.1.CDS.3	Spo23220.1.CDS.3	CDS
Spo23220.1.CDS.2	Spo23220.1.CDS.2	CDS
Spo23220.1.CDS.1	Spo23220.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23220.1.exon.3	Spo23220.1.exon.3	exon
Spo23220.1.exon.2	Spo23220.1.exon.2	exon
Spo23220.1.exon.1	Spo23220.1.exon.1	exon

Homology

[Close]

BLAST of Spo23220.1 vs. NCBI nr
Match: gi|902204447|gb|KNA14872.1| (hypothetical protein SOVF_103430 [Spinacia oleracea])

HSP 1 Score: 331.3 bits (848), Expect = 1.200e-87
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG
Sbjct: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. NCBI nr
Match: gi|731364208|ref|XP_010693848.1| (PREDICTED: 60S ribosomal protein L21-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 313.5 bits (802), Expect = 2.700e-82
Identity = 150/163 (92.02%), Postives = 158/163 (96.93%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KGVIPISTYLRTFHIG+YVDIKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGVIPISTYLRTFHIGQYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWNITKRAIGVEVNKQVGNRIIAKR+H RIEH+QSSRCQE+ K R+KKNDELKAAAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRLHVRIEHVQSSRCQEDFKLRVKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE+ISTKRQP+GPKPGFLVEG TIETVTPIPYDVTNDLKGG
Sbjct: 121 ARGEVISTKRQPKGPKPGFLVEGATIETVTPIPYDVTNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. NCBI nr
Match: gi|922544403|ref|XP_013599978.1| (PREDICTED: 60S ribosomal protein L21-1-like [Brassica oleracea var. oleracea])

HSP 1 Score: 294.7 bits (753), Expect = 1.300e-76
Identity = 137/163 (84.05%), Postives = 150/163 (92.02%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFAR FR+KG IP+STYLRTF +GEYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARGFRKKGTIPLSTYLRTFKVGEYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWN+TKRA+GVEVNKQ+GNRII KR+H R+EH+Q SRC EE K RIKKNDELKAAAK
Sbjct: 61  TGRVWNVTKRAVGVEVNKQIGNRIIKKRLHVRVEHVQQSRCAEEFKLRIKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. NCBI nr
Match: gi|567129788|ref|XP_006392360.1| (hypothetical protein EUTSA_v10023727mg [Eutrema salsugineum])

HSP 1 Score: 294.3 bits (752), Expect = 1.700e-76
Identity = 136/163 (83.44%), Postives = 150/163 (92.02%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R KKNDELKAAAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. NCBI nr
Match: gi|297843758|ref|XP_002889760.1| (60S ribosomal protein L21 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 293.5 bits (750), Expect = 2.900e-76
Identity = 136/163 (83.44%), Postives = 150/163 (92.02%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R KKNDELKAAAK
Sbjct: 61  TGRVWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           A+GE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 AKGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7W3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_084000 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 8.700e-88
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG
Sbjct: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BBR8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g068840 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.900e-82
Identity = 150/163 (92.02%), Postives = 158/163 (96.93%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KGVIPISTYLRTFHIG+YVDIKVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGVIPISTYLRTFHIGQYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWNITKRAIGVEVNKQVGNRIIAKR+H RIEH+QSSRCQE+ K R+KKNDELKAAAK
Sbjct: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRLHVRIEHVQSSRCQEDFKLRVKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE+ISTKRQP+GPKPGFLVEG TIETVTPIPYDVTNDLKGG
Sbjct: 121 ARGEVISTKRQPKGPKPGFLVEGATIETVTPIPYDVTNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
Match: A0A078GDB5_BRANA (BnaC08g42570D protein OS=Brassica napus GN=BnaC08g42570D PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 9.000e-77
Identity = 137/163 (84.05%), Postives = 150/163 (92.02%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFAR FR+KG IP+STYLRTF +GEYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARGFRKKGTIPLSTYLRTFKVGEYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWN+TKRA+GVEVNKQ+GNRII KR+H R+EH+Q SRC EE K RIKKNDELKAAAK
Sbjct: 61  TGRVWNVTKRAVGVEVNKQIGNRIIKKRLHVRVEHVQQSRCAEEFKLRIKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
Match: A0A0D3DY95_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 9.000e-77
Identity = 137/163 (84.05%), Postives = 150/163 (92.02%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFAR FR+KG IP+STYLRTF +GEYVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARGFRKKGTIPLSTYLRTFKVGEYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWN+TKRA+GVEVNKQ+GNRII KR+H R+EH+Q SRC EE K RIKKNDELKAAAK
Sbjct: 61  TGRVWNVTKRAVGVEVNKQIGNRIIKKRLHVRVEHVQQSRCAEEFKLRIKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
Match: V4MEG0_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10023727mg PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 1.200e-76
Identity = 136/163 (83.44%), Postives = 150/163 (92.02%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R KKNDELKAAAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 292.4 bits (747), Expect = 4.000e-78
Identity = 135/163 (82.82%), Postives = 149/163 (91.41%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R KKNDELKAAAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           A GE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 9.900e-77
Identity = 133/163 (81.60%), Postives = 148/163 (90.80%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R K+ND LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.000e-41
Identity = 87/158 (55.06%), Postives = 113/158 (71.52%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MP  +G RARTR LFAR F+  G + +STYL  F IGEYVD+  N A+HKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TG VWN+TKRAIGVE+NK+V +RII KRIH RI+H++ S C++    R+K+ND++K  A 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -ARGEIISTKRQPQGPKPGFLV--EGQTIETVTPIPYD 156
            A+  + STKR P  PK G ++  +GQ  ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.900e-40
Identity = 81/158 (51.27%), Postives = 106/158 (67.09%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MP   G RARTR LF+R FR  G++  +T+LRTF +G+YVDIK  G +HKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGRVWN+T RA+GV +NK+VG RIIAK+IH R EH++ S        RI++N +    AK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIE--TVTPIPYDV 157
             G+ +  +R P  PK GF V  +  E   V P+ Y++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYEL 158

[Close]

BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.300e-39
Identity = 76/157 (48.41%), Postives = 110/157 (70.06%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           M   HG R+RTR +F R FR+ G + +STYL+ + +G+ VDIK NG+I KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TG V+N+TK ++GV +NK VGNR + KR++ R+EHI+ S+C++E   R+K N   +A AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLV--EGQTIETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of Spo23220.1 vs. TAIR (Arabidopsis)
Match: AT1G09590.1 (Translation protein SH3-like family protein)

HSP 1 Score: 292.4 bits (747), Expect = 2.300e-79
Identity = 135/163 (82.82%), Postives = 149/163 (91.41%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R KKNDELKAAAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           A GE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. TAIR (Arabidopsis)
Match: AT1G09690.1 (Translation protein SH3-like family protein)

HSP 1 Score: 292.4 bits (747), Expect = 2.300e-79
Identity = 135/163 (82.82%), Postives = 149/163 (91.41%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R KKNDELKAAAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           A GE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. TAIR (Arabidopsis)
Match: AT1G57660.1 (Translation protein SH3-like family protein)

HSP 1 Score: 287.7 bits (735), Expect = 5.600e-78
Identity = 133/163 (81.60%), Postives = 148/163 (90.80%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R K+ND LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

[Close]

BLAST of Spo23220.1 vs. TAIR (Arabidopsis)
Match: AT1G57860.1 (Translation protein SH3-like family protein)

HSP 1 Score: 287.7 bits (735), Expect = 5.600e-78
Identity = 133/163 (81.60%), Postives = 148/163 (90.80%), Query Frame = 1


		  
Query: 1   MPAGHGARARTRDLFARPFRRKGVIPISTYLRTFHIGEYVDIKVNGAIHKGMPHKFYHGR 60
           MPAGHG RARTRDLFARPFR+KG IP+STYLRTF +G+YVD+KVNGAIHKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNITKRAIGVEVNKQVGNRIIAKRIHARIEHIQSSRCQEELKNRIKKNDELKAAAK 120
           TGR+WN+TKRA+GVEVNKQ+GNRII KRIH R+EH+Q SRC EE K R K+ND LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEIISTKRQPQGPKPGFLVEGQTIETVTPIPYDVTNDLKGG 164
           ARGE ISTKRQP+GPKPGF+VEG T+ETVTPIPYDV NDLKGG
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGG 163

The following BLAST results are available for this feature:

BLAST of Spo23220.1 vs. NCBI nr
BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
BLAST of Spo23220.1 vs. TAIR (Arabidopsis)

BLAST of Spo23220.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902204447\|gb\|KNA14872.1\|	1.2e-87	100.	hypothetical protein SOVF_1034...	[more]
gi\|731364208\|ref\|XP_010693848.1\|	2.7e-82	92.0	PREDICTED: 60S ribosomal prote...	[more]
gi\|922544403\|ref\|XP_013599978.1\|	1.3e-76	84.0	PREDICTED: 60S ribosomal prote...	[more]
gi\|567129788\|ref\|XP_006392360.1\|	1.7e-76	83.4	hypothetical protein EUTSA_v10...	[more]
gi\|297843758\|ref\|XP_002889760.1\|	2.9e-76	83.4	60S ribosomal protein L21 [Ara...	[more]

BLAST of Spo23220.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R7W3_SPIOL	8.7e-88	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BBR8_BETVU	1.9e-82	92.0	Uncharacterized protein OS=Bet...	[more]
A0A078GDB5_BRANA	9.0e-77	84.0	BnaC08g42570D protein OS=Brass...	[more]
A0A0D3DY95_BRAOL	9.0e-77	84.0	Uncharacterized protein OS=Bra...	[more]
V4MEG0_EUTSA	1.2e-76	83.4	Uncharacterized protein OS=Eut...	[more]

BLAST of Spo23220.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL211_ARATH	4.0e-78	82.8	60S ribosomal protein L21-1 OS...	[more]
RL212_ARATH	9.9e-77	81.6	60S ribosomal protein L21-2 OS...	[more]
RL21_CYAPA	1.0e-41	55.0	60S ribosomal protein L21 OS=C...	[more]
RL21_DICDI	1.9e-40	51.2	60S ribosomal protein L21 OS=D...	[more]
RL21A_YEAST	1.3e-39	48.4	60S ribosomal protein L21-A OS...	[more]

BLAST of Spo23220.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT1G09590.1	2.3e-79	82.8	Translation protein SH3-like f...	[more]
AT1G09690.1	2.3e-79	82.8	Translation protein SH3-like f...	[more]
AT1G57660.1	5.6e-78	81.6	Translation protein SH3-like f...	[more]
AT1G57860.1	5.6e-78	81.6	Translation protein SH3-like f...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	GENE3D	2.30.30.70		coord: 1..99 score: 9.0
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 2..158 score: 6.0E
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 5..98 score: 7.1
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 3..99 score: 7.22
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62 scor
None	No IPR available	unknown	Coil	Coil	coord: 102..122 scor

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003735	structural constituent of ribosome