Spo23377.1 (mRNA) | SpinachBase

Overview


Name	Spo23377.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Pre-mRNA-splicing factor SLU7-A
Location	chr6 : 44163290 .. 44163767 (+)
Sequence length	372

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGGTGAGTTTCCGATACTTTTATAATCAAGTTTCTTTATGTTCTTTGATTTTGGTGGTGTTGATAGAACATTAAGAACTGACCATCCAAATTTTTGGTGGATCTTCAGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

mRNA sequence

ATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Coding sequence (CDS)

ATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Protein sequence

MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKHQRKWKSDPNYTKSWYNRGEKGFQASKRLMFQTMHNRVLSVFYWWKENRPVVLYVSFNPS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23377	Spo23377	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23377.1	Spo23377.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23377.1.exon.1	Spo23377.1.exon.1	exon
Spo23377.1.exon.2	Spo23377.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23377.1.CDS.1	Spo23377.1.CDS.1	CDS
Spo23377.1.CDS.2	Spo23377.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo23377.1 vs. NCBI nr
Match: gi|731336505|ref|XP_010679298.1| (PREDICTED: pre-mRNA-splicing factor SLU7-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.2 bits (448), Expect = 1.800e-41
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90

[Close]

BLAST of Spo23377.1 vs. NCBI nr
Match: gi|6686410|gb|AAF23844.1|AC007234_16 (F1E22.4 [Arabidopsis thaliana])

HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1


		  
Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 6  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 65

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 66 HQRKWKSDPNYTKSWYDRGAKIFQAEK 92

[Close]

BLAST of Spo23377.1 vs. NCBI nr
Match: gi|902228730|gb|KNA21247.1| (hypothetical protein SOVF_045230 [Spinacia oleracea])

HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87

[Close]

BLAST of Spo23377.1 vs. NCBI nr
Match: gi|2190551|gb|AAB60915.1| (Similar to C. elegans hypothetical protein K07C5.6 (gb|Z71181). ESTs gb|H36844,gb|AA394956 come from this gene [Arabidopsis thaliana])

HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1


		  
Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 6  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 65

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 66 HQRKWKSDPNYTKSWYDRGAKIFQAEK 92

[Close]

BLAST of Spo23377.1 vs. NCBI nr
Match: gi|674914945|emb|CDY18194.1| (BnaC05g02170D [Brassica napus])

HSP 1 Score: 168.3 bits (425), Expect = 8.300e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1


		  
Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 4  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 63

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K +QA K
Sbjct: 64 HQRKWKSDPNYTKSWYDRGAKIYQAEK 90

[Close]

BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121130 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.200e-41
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90

[Close]

BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045230 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.600e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87

[Close]

BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A078FYG9_BRANA (BnaC05g02170D protein OS=Brassica napus GN=BnaC05g02170D PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.800e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1


		  
Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 4  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 63

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K +QA K
Sbjct: 64 HQRKWKSDPNYTKSWYDRGAKIYQAEK 90

[Close]

BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU18_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141540 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.800e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1


		  
Query: 5  AVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKH 64
          +VAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKH
Sbjct: 5  SVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKH 64

Query: 65 QRKWKSDPNYTKSWYNRGEK 85
          QRKWKSDPNYTKSWYNRGEK
Sbjct: 65 QRKWKSDPNYTKSWYNRGEK 84

[Close]

BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: D7KSF4_ARALL (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475672 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.700e-38
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 1.500e-40
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.700e-39
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +V+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90

[Close]

BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.700e-39
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +V+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90

[Close]

BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 3.400e-32
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90

[Close]

BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.900e-20
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1


		  
Query: 9  KSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKHQRKW 68
          K+R++++K+ EL+EARKAG APAE+DE+GKEINPHIP+Y+  APWYLN+NKPSLKHQR  
Sbjct: 9  KTRDEYKKEKELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQR-G 68

Query: 69 KSDPNYTKSWYNRGEKGFQASKR 92
           +     K WY RG    +A+ +
Sbjct: 69 VTKKEMDKGWYLRGATTGEAATK 90

[Close]

BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Match: AT1G65660.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 166.8 bits (421), Expect = 8.500e-42
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90

[Close]

BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Match: AT4G37120.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 139.0 bits (349), Expect = 1.900e-33
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90

[Close]

BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Match: AT3G45950.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 120.2 bits (300), Expect = 9.100e-28
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1


		  
Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++  P Y  S KP
Sbjct: 1  MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK+ P  T S+Y+RG K +QA K
Sbjct: 61 SLKHQKNWKTKPVSTTSYYDRGAKTYQAEK 90

The following BLAST results are available for this feature:

BLAST of Spo23377.1 vs. NCBI nr
BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
BLAST of Spo23377.1 vs. TAIR (Arabidopsis)

BLAST of Spo23377.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731336505\|ref\|XP_010679298.1\|	1.8e-41	93.3	PREDICTED: pre-mRNA-splicing f...	[more]
gi\|6686410\|gb\|AAF23844.1\|AC007234_16	3.7e-39	93.1	F1E22.4 [Arabidopsis thaliana]	[more]
gi\|902228730\|gb\|KNA21247.1\|	3.7e-39	91.9	hypothetical protein SOVF_0452...	[more]
gi\|2190551\|gb\|AAB60915.1\|	3.7e-39	93.1	Similar to C. elegans hypothet...	[more]
gi\|674914945\|emb\|CDY18194.1\|	8.3e-39	91.9	BnaC05g02170D [Brassica napus]	[more]

BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CCG5_BETVU	1.2e-41	93.3	Uncharacterized protein OS=Bet...	[more]
A0A0K9RQY9_SPIOL	2.6e-39	91.9	Uncharacterized protein OS=Spi...	[more]
A0A078FYG9_BRANA	5.8e-39	91.9	BnaC05g02170D protein OS=Brass...	[more]
A0A0K9QU18_SPIOL	5.8e-39	98.7	Uncharacterized protein (Fragm...	[more]
D7KSF4_ARALL	1.7e-38	88.8	Pre-mRNA-splicing factor SLU7-...	[more]

BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SLU7A_ARATH	1.5e-40	88.8	Pre-mRNA-splicing factor SLU7-...	[more]
SLU7_ORYSJ	1.7e-39	85.5	Pre-mRNA-splicing factor SLU7 ...	[more]
SLU7_ORYSI	1.7e-39	85.5	Pre-mRNA-splicing factor SLU7 ...	[more]
SLU7B_ARATH	3.4e-32	72.2	Pre-mRNA-splicing factor SLU7-...	[more]
SLU7_DICDI	3.9e-20	57.8	Pre-mRNA-splicing factor slu7 ...	[more]

BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G65660.1	8.5e-42	88.8	Pre-mRNA splicing Prp18-intera...	[more]
AT4G37120.1	1.9e-33	72.2	Pre-mRNA splicing Prp18-intera...	[more]
AT3G45950.1	9.1e-28	66.6	Pre-mRNA splicing Prp18-intera...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12942	STEP II SPLICING FACTOR SLU7	coord: 6..90 score: 1.1
None	No IPR available	PANTHER	PTHR12942:SF2	PRE-MRNA-SPLICING FACTOR SLU7	coord: 6..90 score: 1.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051276	chromosome organization
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008284	positive regulation of cell proliferation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0043687	post-translational protein modification
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0030422	production of siRNA involved in RNA interference
biological_process	GO:0009410	response to xenobiotic stimulus
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0000386	second spliceosomal transesterification activity
molecular_function	GO:0003727	single-stranded RNA binding
molecular_function	GO:0008270	zinc ion binding