Spo23381.1 (mRNA) | SpinachBase

Overview


Name	Spo23381.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	chr6 : 44098940 .. 44101230 (+)
Sequence length	1209

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTCCTACACGTGTCACCATCTCATTCATCTTCCTCTTATATATATCCTCCTAAAAGTACACCATCTTTTTACTCAGATCTTCTCCTTCAATTCAATTCCCTCAAAACTCGAAATAGATAAAAAAAATTCATGAAATCTGCACTTTCAAGAACCGGCTCAATCCCGGTACAAACCTTAAACCGGACCCCTTCACTTAACGGAAGCATTCCTTCGTCCCCAAAAGTCTCATTTCGGTGTGAAAATAGTGGGTTTACTAAAATTAGGCGGTCTAACTCGGATACTGATTTGATCCGATCCGAGTTGAGGAGCTCTCGAGTTACCCGAGTTGGATCGGTGTCGTTCCCTGATTTGGGTATGATTGTTGAGGAGGAATTGGCTGGAGGAATCGGAATTGGAATCGGAACCGGAAATGGGAAAGGGAAAGGGAATAATTACGGAGGTAAAGGAAAAGGCGGGAGTAATAACAAAAATAACAGTAATGAGAAAGGTAATATTGGGGATTATTACCAAAAAATGCTCAAGTCAAATCCTGGTGATTCTTTGCTTTTGAGAAACTATGGGAAATACTTGCATGAGGTAAATTTTATTACTTCCGAAATTAATAATGACATGAGTTTATATTGGAGCTCGTAAATGTGTCGTGTCGGGGTCGGGTTATGTTCGTGTCGAATATAAACGGTTTTTACACCACTAACCCAACCCATTTAATAAACATGTTGGGTCGTGTTGATCCGCTTACCTAATCGTATCGGAAACTCTTGATATTAATTCGTTTCTTCGTGTCTGTTTCGTGTAGTGTTGTTGTGTTTGTTCGATTAAGTTGAATGCATCATAAAATTTATAACCCTAATACATTAAGTTTTTGGTTGTTTTTTCGAAAGCGGTTTAAGTCGTGTCAGTTTTGTGCGGTGAATCTCAACACTAACCCGACTCATTTAATTAAACGTGTCGATATCGTGTTGACCCGTTTAATTAAACGGGTCGTATACCTTGACACTATCCCGCCTTTTTCATCCCCGGTTCGTGTCGCATCAGATTTTACCAGCTCTATTTTATATACGAGTAATATAGATTGTTATGTATCTAACAAGTTCAGATAAAATAAATCATAATTTTAATGTTTGTTGGGATTGATTGGTTGATAATGTTTTGACAAAATATATGTATAGGTGGAGAAAAATGTGGAGAAAGCAGAGGAATGTTATGGGAGAGCAATATTAGCAAATCCAGGAGATGGAGAATTATTATCATTATATGGGAGTTTAATTTGGGAAACTTCTAAGGATGAAGATCGAGCTCAACTTTACTATGATCAAGCTCTTCATGCCTCACCTAATGATAGGTACATTAATTTTTATAGATTATTCTTGCGTGGATCTGGTCCACAATAATATTAGTGTGTAACGAAAATCAATAGTTTTATCTAGCACATTTTTACGTTCATAGGGATCTGTATTGTTCATATAGTAACTATCGTAAATTTAACACCAAAATTTTTAGACATAATAACCATTTTTTACAGTAACCTTATGTTTTTTAAAGCTATTGGACTTAAATCACATTATTCAAGAGCACAACATGTATCAACGATACTTTTTTATATATTTTTAATAATAATCCTAATAAAATGCCAAAATAAATTAAGAATATGTTATTGAATTTATTTTAAGATAGATTCACAATAAATTTGGTATGGTCCAAGTCCCTTTAAAAATTGGTGAACTTTTATTTATTTTTTCTATTAGTGATAAAGATATATGAATATATCATTGTATGAAAGTTATTTCATCTAAATATATTTACAATTTTTATTAATTTTTTTAATATATAGCACGGTATTGGGATCATATGCACACTTCTTATGGGAAGCAGAGGATGATGAAGAAGATGCAGATATTATGAAGCTTGGAAATGATGTTGTTCTTCCTGCTATGGTTGGAGCTCACTAATTAAACCCTTGGCCCGATCCATTAATCCGGACAATTTTCTATATACAACCGGTTATATAACGTATAAATGTTATTTTCTTACTTGCTTACTTGCATCTTATGATCACATGGGTAAAATAATCGTTCAGAGTTCTTGGTAGGACAATCAGTTGTACGATGAAAATTCCTCTTTTAAAGTGAGGATGTAAAAAAAAAAACTTATTTTTTTGTTAGTTTTCTTGCTTTTACTAACTTCTAAGTATTACTCTATTACTCTAGTAGGCAATAAATAGAATTCAAGGATGTAACAAGAAATACAAGACTATGTAACAATTTTCTTTGTACGAATATGACCGAAT

mRNA sequence

AATTTTCCTACACGTGTCACCATCTCATTCATCTTCCTCTTATATATATCCTCCTAAAAGTACACCATCTTTTTACTCAGATCTTCTCCTTCAATTCAATTCCCTCAAAACTCGAAATAGATAAAAAAAATTCATGAAATCTGCACTTTCAAGAACCGGCTCAATCCCGGTACAAACCTTAAACCGGACCCCTTCACTTAACGGAAGCATTCCTTCGTCCCCAAAAGTCTCATTTCGGTGTGAAAATAGTGGGTTTACTAAAATTAGGCGGTCTAACTCGGATACTGATTTGATCCGATCCGAGTTGAGGAGCTCTCGAGTTACCCGAGTTGGATCGGTGTCGTTCCCTGATTTGGGTATGATTGTTGAGGAGGAATTGGCTGGAGGAATCGGAATTGGAATCGGAACCGGAAATGGGAAAGGGAAAGGGAATAATTACGGAGGTAAAGGAAAAGGCGGGAGTAATAACAAAAATAACAGTAATGAGAAAGGTAATATTGGGGATTATTACCAAAAAATGCTCAAGTCAAATCCTGGTGATTCTTTGCTTTTGAGAAACTATGGGAAATACTTGCATGAGGTGGAGAAAAATGTGGAGAAAGCAGAGGAATGTTATGGGAGAGCAATATTAGCAAATCCAGGAGATGGAGAATTATTATCATTATATGGGAGTTTAATTTGGGAAACTTCTAAGGATGAAGATCGAGCTCAACTTTACTATGATCAAGCTCTTCATGCCTCACCTAATGATAGCACGGTATTGGGATCATATGCACACTTCTTATGGGAAGCAGAGGATGATGAAGAAGATGCAGATATTATGAAGCTTGGAAATGATGTTGTTCTTCCTGCTATGGTTGGAGCTCACTAATTAAACCCTTGGCCCGATCCATTAATCCGGACAATTTTCTATATACAACCGGTTATATAACGTATAAATGTTATTTTCTTACTTGCTTACTTGCATCTTATGATCACATGGGTAAAATAATCGTTCAGAGTTCTTGGTAGGACAATCAGTTGTACGATGAAAATTCCTCTTTTAAAGTGAGGATGTAAAAAAAAAAACTTATTTTTTTGTTAGTTTTCTTGCTTTTACTAACTTCTAAGTATTACTCTATTACTCTAGTAGGCAATAAATAGAATTCAAGGATGTAACAAGAAATACAAGACTATGTAACAATTTTCTTTGTACGAATATGACCGAAT

Coding sequence (CDS)

ATGAAATCTGCACTTTCAAGAACCGGCTCAATCCCGGTACAAACCTTAAACCGGACCCCTTCACTTAACGGAAGCATTCCTTCGTCCCCAAAAGTCTCATTTCGGTGTGAAAATAGTGGGTTTACTAAAATTAGGCGGTCTAACTCGGATACTGATTTGATCCGATCCGAGTTGAGGAGCTCTCGAGTTACCCGAGTTGGATCGGTGTCGTTCCCTGATTTGGGTATGATTGTTGAGGAGGAATTGGCTGGAGGAATCGGAATTGGAATCGGAACCGGAAATGGGAAAGGGAAAGGGAATAATTACGGAGGTAAAGGAAAAGGCGGGAGTAATAACAAAAATAACAGTAATGAGAAAGGTAATATTGGGGATTATTACCAAAAAATGCTCAAGTCAAATCCTGGTGATTCTTTGCTTTTGAGAAACTATGGGAAATACTTGCATGAGGTGGAGAAAAATGTGGAGAAAGCAGAGGAATGTTATGGGAGAGCAATATTAGCAAATCCAGGAGATGGAGAATTATTATCATTATATGGGAGTTTAATTTGGGAAACTTCTAAGGATGAAGATCGAGCTCAACTTTACTATGATCAAGCTCTTCATGCCTCACCTAATGATAGCACGGTATTGGGATCATATGCACACTTCTTATGGGAAGCAGAGGATGATGAAGAAGATGCAGATATTATGAAGCTTGGAAATGATGTTGTTCTTCCTGCTATGGTTGGAGCTCACTAA

Protein sequence

MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIRRSNSDTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPAMVGAH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23381	Spo23381	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23381.1	Spo23381.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23381.1.exon.1	Spo23381.1.exon.1	exon
Spo23381.1.exon.2	Spo23381.1.exon.2	exon
Spo23381.1.exon.3	Spo23381.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23381.1.utr5p.1	Spo23381.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23381.1.CDS.1	Spo23381.1.CDS.1	CDS
Spo23381.1.CDS.2	Spo23381.1.CDS.2	CDS
Spo23381.1.CDS.3	Spo23381.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23381.1.utr3p.1	Spo23381.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo23381.1 vs. NCBI nr
Match: gi|902198571|gb|KNA13712.1| (hypothetical protein SOVF_113830 [Spinacia oleracea])

HSP 1 Score: 475.7 bits (1223), Expect = 4.800e-131
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIRRSNSDTDLIRSELRS 60
           MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIR SNSDTDLIRSELRS
Sbjct: 1   MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIRLSNSDTDLIRSELRS 60

Query: 61  SRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKG 120
           SRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKG
Sbjct: 61  SRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKG 120

Query: 121 NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS 180
           NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS
Sbjct: 121 NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS 180

Query: 181 LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPA 240
           LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPA
Sbjct: 181 LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPA 240

Query: 241 MVGAH 246
           MVGAH
Sbjct: 241 MVGAH 245

[Close]

BLAST of Spo23381.1 vs. NCBI nr
Match: gi|731367334|ref|XP_010695553.1| (PREDICTED: uncharacterized protein LOC104908168 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 332.8 bits (852), Expect = 5.100e-88
Identity = 181/250 (72.40%), Postives = 210/250 (84.00%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTLNRTPSLNG--SIPSSPKVSFRCENSG--FTKIRRSNSDTDLIRS 60
           MKSAL RTGS+PVQ LNR PS  G  +IPSSP++S R  N+   F+ I+RSNSDT+LIRS
Sbjct: 1   MKSALLRTGSVPVQQLNRCPSQTGIITIPSSPRISLRSGNNNTIFSGIKRSNSDTELIRS 60

Query: 61  ELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKN-N 120
           EL +SRV+RVGSVSFPDLG+I EEE  GGIGIGIG G    KGNNYGGKGK  +N+ N N
Sbjct: 61  ELINSRVSRVGSVSFPDLGIITEEESNGGIGIGIGNG----KGNNYGGKGKDSNNSSNSN 120

Query: 121 SNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELL 180
           SNEK  I +YYQ+MLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILA+PGDGELL
Sbjct: 121 SNEKSGIQEYYQEMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILASPGDGELL 180

Query: 181 SLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGND 240
           SLYG+LIWET+KDEDRAQ+Y+DQA++ASP+D  VLGSYAHFLWEAE+DEE+ +  K  N 
Sbjct: 181 SLYGNLIWETTKDEDRAQIYFDQAVNASPDDCVVLGSYAHFLWEAEEDEENGEEFKHENA 240

Query: 241 VVLPAMVGAH 246
            V PA++GA+
Sbjct: 241 AV-PAIIGAY 245

[Close]

BLAST of Spo23381.1 vs. NCBI nr
Match: gi|685258450|ref|XP_009131195.1| (PREDICTED: uncharacterized protein LOC103855897 [Brassica rapa])

HSP 1 Score: 195.7 bits (496), Expect = 9.700e-47
Identity = 125/253 (49.41%), Postives = 162/253 (64.03%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTL---------NRTPSL--NGSIPSSPKVSFRCENSGFTKIRRSNS 60
           MKS L RTGS+PVQT          N   SL  NG   S+ K+S   +++    +RR+ S
Sbjct: 1   MKSLLMRTGSMPVQTRFIPTTISRHNSVESLSTNGDRFSAGKISIDAKSAA--GMRRALS 60

Query: 61  DTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGG 120
           ++D+IRSE  S  V  VGS   P    I EE+  G  G               GG G GG
Sbjct: 61  ESDVIRSERMSKSV--VGSKPSP--ARIPEEDEQGFSG---------------GGGGGGG 120

Query: 121 SNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANP 180
           S       ++  IGDYY++MLKSNP  SLLL NYGK+L+EVE+++E+AEE YGRAILA+P
Sbjct: 121 SGFSGGYEDRRKIGDYYREMLKSNPNSSLLLMNYGKFLYEVERDLERAEEYYGRAILADP 180

Query: 181 GDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADI 240
           GDGE LS+YG LIWET +DE+RAQ Y+DQA++ASP+D  VLGSYAHF+WEAEDDE++ + 
Sbjct: 181 GDGEALSMYGKLIWETKRDEERAQCYFDQAVNASPDDCMVLGSYAHFMWEAEDDEDEEEE 229

Query: 241 MKLGNDVVLPAMV 243
           + +G     PA+V
Sbjct: 241 LMVG---ASPALV 229

[Close]

BLAST of Spo23381.1 vs. NCBI nr
Match: gi|674954340|emb|CDX78813.1| (BnaA01g08800D [Brassica napus])

HSP 1 Score: 195.7 bits (496), Expect = 9.700e-47
Identity = 125/253 (49.41%), Postives = 162/253 (64.03%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTL---------NRTPSL--NGSIPSSPKVSFRCENSGFTKIRRSNS 60
           MKS L RTGS+PVQT          N   SL  NG   S+ K+S   +++    +RR+ S
Sbjct: 1   MKSLLMRTGSMPVQTRFIPTTISRHNSVESLSTNGDRFSAGKISIDAKSAA--GMRRALS 60

Query: 61  DTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGG 120
           ++D+IRSE  S  V  VGS   P    I EE+  G  G               GG G GG
Sbjct: 61  ESDVIRSERMSKSV--VGSKPSP--ARIPEEDEQGFSG---------------GGGGGGG 120

Query: 121 SNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANP 180
           S       ++  IGDYY++MLKSNP  SLLL NYGK+L+EV++N+E+AEE YGRAILA+P
Sbjct: 121 SGFSGGYEDRRKIGDYYREMLKSNPNSSLLLMNYGKFLYEVKENLERAEEYYGRAILADP 180

Query: 181 GDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADI 240
           GDGE LS+YG LIWET +DE+RAQ Y+DQA++ASP+D  VLGSYAHF+WEAEDD+E+ + 
Sbjct: 181 GDGEALSMYGKLIWETKRDEERAQCYFDQAVNASPDDCMVLGSYAHFMWEAEDDDEEEEE 229

Query: 241 MKLGNDVVLPAMV 243
           + +G     PA+V
Sbjct: 241 LMVG---ASPALV 229

[Close]

BLAST of Spo23381.1 vs. NCBI nr
Match: gi|255573455|ref|XP_002527653.1| (PREDICTED: uncharacterized protein LOC8289072 [Ricinus communis])

HSP 1 Score: 194.9 bits (494), Expect = 1.700e-46
Identity = 134/276 (48.55%), Postives = 174/276 (63.04%), Query Frame = 1


		  
Query: 1   MKSALSRTGSI----------PVQTLNRTPSLNG------SIPSSPKVSFRCENSGF--- 60
           MKS L RTGSI          P  +L+R  S++       S  +SPK S   E +     
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSRKRD 60

Query: 61  TKIRRSNSDTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAG-------------GIGI 120
           T IRR+ S+TD+IRSE     ++R GS+SFP    I+EEE +               +G 
Sbjct: 61  TLIRRALSETDIIRSETEEM-LSRAGSMSFP--ARILEEEYSNLTYIWPENGIPLEELGF 120

Query: 121 GIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLH 180
             G G+G GKG N GG G GG +  N+S++   IGDYY +MLKSNP DSLLLRNYGK+LH
Sbjct: 121 SSG-GDGFGKGKNSGG-GNGGVDG-NSSDDLSKIGDYYTEMLKSNPNDSLLLRNYGKFLH 180

Query: 181 EVEKNVEKAEECYGRAILANPGDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDST 240
           EVE ++E+AEE YGRAILA PGDGE+LSLYG LIW+  +D +RA+ Y+DQA+ A+P+D  
Sbjct: 181 EVEGDMERAEEYYGRAILAGPGDGEVLSLYGKLIWDRQRDGERAKAYFDQAVSAAPHDCM 240

Query: 241 VLGSYAHFLWEAEDDEEDADIMKLGNDVVLPAMVGA 245
           V+GSYAHF+WEAE++EE+    K     + PAMV A
Sbjct: 241 VMGSYAHFMWEAEEEEEEEINSKA---QISPAMVVA 267

[Close]

BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4I3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_113830 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 3.400e-131
Identity = 244/245 (99.59%), Postives = 244/245 (99.59%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIRRSNSDTDLIRSELRS 60
           MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIR SNSDTDLIRSELRS
Sbjct: 1   MKSALSRTGSIPVQTLNRTPSLNGSIPSSPKVSFRCENSGFTKIRLSNSDTDLIRSELRS 60

Query: 61  SRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKG 120
           SRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKG
Sbjct: 61  SRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKG 120

Query: 121 NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS 180
           NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS
Sbjct: 121 NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS 180

Query: 181 LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPA 240
           LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPA
Sbjct: 181 LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGNDVVLPA 240

Query: 241 MVGAH 246
           MVGAH
Sbjct: 241 MVGAH 245

[Close]

BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8J3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g125550 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 3.500e-88
Identity = 181/250 (72.40%), Postives = 210/250 (84.00%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTLNRTPSLNG--SIPSSPKVSFRCENSG--FTKIRRSNSDTDLIRS 60
           MKSAL RTGS+PVQ LNR PS  G  +IPSSP++S R  N+   F+ I+RSNSDT+LIRS
Sbjct: 1   MKSALLRTGSVPVQQLNRCPSQTGIITIPSSPRISLRSGNNNTIFSGIKRSNSDTELIRS 60

Query: 61  ELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKN-N 120
           EL +SRV+RVGSVSFPDLG+I EEE  GGIGIGIG G    KGNNYGGKGK  +N+ N N
Sbjct: 61  ELINSRVSRVGSVSFPDLGIITEEESNGGIGIGIGNG----KGNNYGGKGKDSNNSSNSN 120

Query: 121 SNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELL 180
           SNEK  I +YYQ+MLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILA+PGDGELL
Sbjct: 121 SNEKSGIQEYYQEMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILASPGDGELL 180

Query: 181 SLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADIMKLGND 240
           SLYG+LIWET+KDEDRAQ+Y+DQA++ASP+D  VLGSYAHFLWEAE+DEE+ +  K  N 
Sbjct: 181 SLYGNLIWETTKDEDRAQIYFDQAVNASPDDCVVLGSYAHFLWEAEEDEENGEEFKHENA 240

Query: 241 VVLPAMVGAH 246
            V PA++GA+
Sbjct: 241 AV-PAIIGAY 245

[Close]

BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
Match: A0A078CUH8_BRANA (BnaA01g08800D protein OS=Brassica napus GN=BnaA01g08800D PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.700e-47
Identity = 125/253 (49.41%), Postives = 162/253 (64.03%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTL---------NRTPSL--NGSIPSSPKVSFRCENSGFTKIRRSNS 60
           MKS L RTGS+PVQT          N   SL  NG   S+ K+S   +++    +RR+ S
Sbjct: 1   MKSLLMRTGSMPVQTRFIPTTISRHNSVESLSTNGDRFSAGKISIDAKSAA--GMRRALS 60

Query: 61  DTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGG 120
           ++D+IRSE  S  V  VGS   P    I EE+  G  G               GG G GG
Sbjct: 61  ESDVIRSERMSKSV--VGSKPSP--ARIPEEDEQGFSG---------------GGGGGGG 120

Query: 121 SNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANP 180
           S       ++  IGDYY++MLKSNP  SLLL NYGK+L+EV++N+E+AEE YGRAILA+P
Sbjct: 121 SGFSGGYEDRRKIGDYYREMLKSNPNSSLLLMNYGKFLYEVKENLERAEEYYGRAILADP 180

Query: 181 GDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADI 240
           GDGE LS+YG LIWET +DE+RAQ Y+DQA++ASP+D  VLGSYAHF+WEAEDD+E+ + 
Sbjct: 181 GDGEALSMYGKLIWETKRDEERAQCYFDQAVNASPDDCMVLGSYAHFMWEAEDDDEEEEE 229

Query: 241 MKLGNDVVLPAMV 243
           + +G     PA+V
Sbjct: 241 LMVG---ASPALV 229

[Close]

BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
Match: M4D9V9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 6.700e-47
Identity = 125/253 (49.41%), Postives = 162/253 (64.03%), Query Frame = 1


		  
Query: 1   MKSALSRTGSIPVQTL---------NRTPSL--NGSIPSSPKVSFRCENSGFTKIRRSNS 60
           MKS L RTGS+PVQT          N   SL  NG   S+ K+S   +++    +RR+ S
Sbjct: 1   MKSLLMRTGSMPVQTRFIPTTISRHNSVESLSTNGDRFSAGKISIDAKSAA--GMRRALS 60

Query: 61  DTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGG 120
           ++D+IRSE  S  V  VGS   P    I EE+  G  G               GG G GG
Sbjct: 61  ESDVIRSERMSKSV--VGSKPSP--ARIPEEDEQGFSG---------------GGGGGGG 120

Query: 121 SNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANP 180
           S       ++  IGDYY++MLKSNP  SLLL NYGK+L+EVE+++E+AEE YGRAILA+P
Sbjct: 121 SGFSGGYEDRRKIGDYYREMLKSNPNSSLLLMNYGKFLYEVERDLERAEEYYGRAILADP 180

Query: 181 GDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWEAEDDEEDADI 240
           GDGE LS+YG LIWET +DE+RAQ Y+DQA++ASP+D  VLGSYAHF+WEAEDDE++ + 
Sbjct: 181 GDGEALSMYGKLIWETKRDEERAQCYFDQAVNASPDDCMVLGSYAHFMWEAEDDEDEEEE 229

Query: 241 MKLGNDVVLPAMV 243
           + +G     PA+V
Sbjct: 241 LMVG---ASPALV 229

[Close]

BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
Match: B9SNT4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1278170 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.100e-46
Identity = 134/276 (48.55%), Postives = 174/276 (63.04%), Query Frame = 1


		  
Query: 1   MKSALSRTGSI----------PVQTLNRTPSLNG------SIPSSPKVSFRCENSGF--- 60
           MKS L RTGSI          P  +L+R  S++       S  +SPK S   E +     
Sbjct: 1   MKSLLLRTGSIQAHAPVTCGSPKLSLSRRNSISSVLSGEKSTANSPKFSLHLEINSRKRD 60

Query: 61  TKIRRSNSDTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELAG-------------GIGI 120
           T IRR+ S+TD+IRSE     ++R GS+SFP    I+EEE +               +G 
Sbjct: 61  TLIRRALSETDIIRSETEEM-LSRAGSMSFP--ARILEEEYSNLTYIWPENGIPLEELGF 120

Query: 121 GIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLH 180
             G G+G GKG N GG G GG +  N+S++   IGDYY +MLKSNP DSLLLRNYGK+LH
Sbjct: 121 SSG-GDGFGKGKNSGG-GNGGVDG-NSSDDLSKIGDYYTEMLKSNPNDSLLLRNYGKFLH 180

Query: 181 EVEKNVEKAEECYGRAILANPGDGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDST 240
           EVE ++E+AEE YGRAILA PGDGE+LSLYG LIW+  +D +RA+ Y+DQA+ A+P+D  
Sbjct: 181 EVEGDMERAEEYYGRAILAGPGDGEVLSLYGKLIWDRQRDGERAKAYFDQAVSAAPHDCM 240

Query: 241 VLGSYAHFLWEAEDDEEDADIMKLGNDVVLPAMVGA 245
           V+GSYAHF+WEAE++EE+    K     + PAMV A
Sbjct: 241 VMGSYAHFMWEAEEEEEEEINSKA---QISPAMVVA 267

[Close]

BLAST of Spo23381.1 vs. TAIR (Arabidopsis)
Match: AT4G17940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 171.8 bits (434), Expect = 5.300e-43
Identity = 91/152 (59.87%), Postives = 111/152 (73.03%), Query Frame = 1


		  
Query: 75  GMIVEEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNP 134
           G+ VEE+   G G+G G+G   G GN  GG             +K  IGDYY++ML+SNP
Sbjct: 113 GLPVEEKCFTGGGVGGGSGYSGGYGNGGGG----------GYEDKSKIGDYYREMLRSNP 172

Query: 135 GDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGSLIWETSKDEDRAQL 194
            +SLLL NYGK+L+EVEK+ E AEE YGRAIL NPGDGE LS+YG LIWET +DE RAQ 
Sbjct: 173 NNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWETKRDEKRAQG 232

Query: 195 YYDQALHASPNDSTVLGSYAHFLWEAEDDEED 227
           Y+DQA++ASPND  VLGSYA F+WEAEDD++D
Sbjct: 233 YFDQAVNASPNDCMVLGSYARFMWEAEDDDDD 254

[Close]

BLAST of Spo23381.1 vs. TAIR (Arabidopsis)
Match: AT5G20190.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 121.3 bits (303), Expect = 8.200e-28
Identity = 66/148 (44.59%), Postives = 98/148 (66.22%), Query Frame = 1


		  
Query: 79  EEELAGGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNPGDSL 138
           + E+AGG G G+  G GKG+    GG+  GG    +N++       +Y+KM+++NPG+ +
Sbjct: 122 DTEVAGGGGGGMFHGGGKGRS---GGRSDGGDGGDDNTDV------HYRKMIEANPGNGI 181

Query: 139 LLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGSLIWETSKDEDRAQLYYDQ 198
            L NY K+L EV K+  KAEE  GRAIL +P DG +L++Y  L+W+  KD  RA+ Y++Q
Sbjct: 182 FLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAELVWKIHKDSSRAENYFNQ 241

Query: 199 ALHASPNDSTVLGSYAHFLWEAEDDEED 227
           A+ A+P D  V  SYA FLW+AE++EE+
Sbjct: 242 AVAAAPEDCYVQASYARFLWDAEEEEEE 260

[Close]

BLAST of Spo23381.1 vs. TAIR (Arabidopsis)
Match: AT4G32340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 115.5 bits (288), Expect = 4.500e-26
Identity = 79/190 (41.58%), Postives = 112/190 (58.95%), Query Frame = 1


		  
Query: 44  IRRSNSDTDLIRSELRSSRVTRVGSVSFPDLGMIVEEELA----GGIGIGIGTGNGKGKG 103
           I R++SD +L + +   S +T+  SV   +   +   E +    GG   G G   G G G
Sbjct: 42  ITRASSDGNLYKIQSPES-ITKTISVYHEETASLRVLEGSRLPQGGSNGGFGGRGGDGAG 101

Query: 104 NNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEE 163
              GG G GG          G++  YY++M++  PGD+LLL NY ++L EV+ +  KAEE
Sbjct: 102 ---GGGGGGG----------GSVDGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEE 161

Query: 164 CYGRAILANPG-DGELLSLYGSLIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLW 223
              RA+L+  G DGELLS+YG LIW+   D  RAQ YYDQA+ +SP+D  VL SYA FLW
Sbjct: 162 YCERAMLSESGRDGELLSMYGDLIWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLW 217

Query: 224 EAEDDEEDAD 229
           +AE++ E+ +
Sbjct: 222 DAEEEVEEEE 217

[Close]

BLAST of Spo23381.1 vs. TAIR (Arabidopsis)
Match: AT1G80130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.100e-23
Identity = 65/143 (45.45%), Postives = 86/143 (60.14%), Query Frame = 1


		  
Query: 84  GGIGIGIGTGNGKGKGNNYGGKGKGGSNNKNNSNEKGNIGDYYQKMLKSNPGDSLLLRNY 143
           GG G+G   GN    G   GG G  G  +++ ++       YY++M+ SNPG+SLL  NY
Sbjct: 133 GGGGMGGSGGNICNGGGGVGGSGVDGGRSEDATDT------YYREMIDSNPGNSLLTGNY 192

Query: 144 GKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGSLIWETSKDEDRAQLYYDQALHAS 203
            K+L EV+ +++KAEE   RAIL N  DG +LSLY  LI    +D  RA  YY QA+  S
Sbjct: 193 AKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADLILHNHQDRQRAHSYYKQAVKMS 252

Query: 204 PNDSTVLGSYAHFLWEAEDDEED 227
           P D  V  SYA FLW+ ++DEED
Sbjct: 253 PEDCYVQASYARFLWDVDEDEED 269

[Close]

BLAST of Spo23381.1 vs. TAIR (Arabidopsis)
Match: AT1G04530.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.500e-21
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 1


		  
Query: 121 NIGDYYQKMLKSNPGDSLLLRNYGKYLHEVEKNVEKAEECYGRAILANPGDGELLSLYGS 180
           N GDYY+ ML+  P   LLL+NY K+L E + ++  AEE Y +  +  P DG  L+ YG 
Sbjct: 120 NCGDYYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGR 179

Query: 181 LIWETSKDEDRAQLYYDQALHASPNDSTVLGSYAHFLWE--AEDDEEDAD 229
           L+ +  +DE +A  Y+++A+ ASP+DS VL +YA FLWE  A+DD+ED D
Sbjct: 180 LVMKLHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWEINADDDDEDDD 228

The following BLAST results are available for this feature:

BLAST of Spo23381.1 vs. NCBI nr
BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
BLAST of Spo23381.1 vs. ExPASy Swiss-Prot
BLAST of Spo23381.1 vs. TAIR (Arabidopsis)

BLAST of Spo23381.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902198571\|gb\|KNA13712.1\|	4.8e-131	99.5	hypothetical protein SOVF_1138...	[more]
gi\|731367334\|ref\|XP_010695553.1\|	5.1e-88	72.4	PREDICTED: uncharacterized pro...	[more]
gi\|685258450\|ref\|XP_009131195.1\|	9.7e-47	49.4	PREDICTED: uncharacterized pro...	[more]
gi\|674954340\|emb\|CDX78813.1\|	9.7e-47	49.4	BnaA01g08800D [Brassica napus]	[more]
gi\|255573455\|ref\|XP_002527653.1\|	1.7e-46	48.5	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23381.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R4I3_SPIOL	3.4e-131	99.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8B8J3_BETVU	3.5e-88	72.4	Uncharacterized protein OS=Bet...	[more]
A0A078CUH8_BRANA	6.7e-47	49.4	BnaA01g08800D protein OS=Brass...	[more]
M4D9V9_BRARP	6.7e-47	49.4	Uncharacterized protein OS=Bra...	[more]
B9SNT4_RICCO	1.1e-46	48.5	Putative uncharacterized prote...	[more]

BLAST of Spo23381.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo23381.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G17940.1	5.3e-43	59.8	Tetratricopeptide repeat (TPR)...	[more]
AT5G20190.1	8.2e-28	44.5	Tetratricopeptide repeat (TPR)...	[more]
AT4G32340.1	4.5e-26	41.5	Tetratricopeptide repeat (TPR)...	[more]
AT1G80130.1	2.1e-23	45.4	Tetratricopeptide repeat (TPR)...	[more]
AT1G04530.1	2.5e-21	46.3	Tetratricopeptide repeat (TPR)...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 124..225 score: 2.6
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 124..225 score: 2.37
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 124..206 score: 12
None	No IPR available	PANTHER	PTHR26312	FAMILY NOT NAMED	coord: 44..228 score: 3.2
None	No IPR available	PANTHER	PTHR26312:SF53	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN	coord: 44..228 score: 3.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding