Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTTTTGAGTCAATTTTCAGTGATTGGCCTACCTCGTGTGCTTGCTCACAGGATCATGGAGTATTTATATCACATTCTGTACTCTCTCTCTCCTTCTCCATCCCCACCAAATCGACGGTGACAGATCCCTCTCTCTCTGCAACTGGTGGTGGCGGTTGGTGAAGATAAAGTGTGACTAAATTTATAAAAAAAGCAAAGTTTTTTCTAATAATTGGGGCTGAATTTCATCATCTTTAACCTAAGGTTACATTCTTACACACGTCCCTTTATCTCTTTTGTCATTTTACCCCCTTTTGTGGCTCTCAAATTCTGATTCTGGGCAACCCATTTCTCTATCTTTTCTGTGTTCATATAAATTTTCATAGAATCCCCAAAAAGAATCCCAAATTTAAATGGGTCAGCTTCCTTGATTTATTTTCCCTCTTTTCTGGGTTTTTCTTCTAATTTGTTTATATTCTTGCATTTTATTGGGTTCATGCTTTAACACTCAAATGGTATAATATGTGGTTATATTTTTTCTGGGTATATGTTAAATTCTTTAGTTGTTCAAATGTGATAGAGATGGGATTAAAATGTAATAATGTGTGGATTTTTTTTTTCTTTTGCAGATCGAGTATTCTGATTGAGTAATTGATTTGGAAGCTTGTTTCTGCTGGGATTTGAGCTTTTCTGACTGTAACTTTGGTTGCATAAGAATTATTAATTGGTAAGAATCATTTCTTCAAGTTTGTTTATGATTTTGCAATTTGCATCTAATCATTGTGATTTGTTAGCTGATTTAGTCATTGTGATTCGTTAGACTTTAAGAGGGATTTATTCATCTTAGTCTTTAAGAGGGATTTATCTGAGTGTCTTGCTCAATGTTTAGTTAGCTGTTTCAAAGATTGTTACTGTATCACTTTAGACAATTGCAATGGTGAATAGAATTTCTGTTTGTTTTAAAAACTTCAGAATTGGGATGTTTACATGTGATGCTATCTGTTTGAATATCTTTTCAAGAACTGATTCTTTAAGTTGCTGTGGGTTTGATTGTTGTGGTCTGTGAGTAGTAATAGATGACCTTATTGAATTTTATGATAAACTCGGTTATCCTGAAATATAGGACGAGAAATGGTGGTACAGGGTAGAATAAAGAGGGAGCTGAGTACCCTACAGTTGAATATCTTGAAATGGTTCAAAAACTTTCAATTCTCCCAATCCTAATAAATGGAGGATTGCTTCAAGGCATTTGAAATTTTACATGTGATTCAGTTGAAGGATGAGACTAGTGCCTGAAGTATTGGCTAAAGAAGTTACGGTCAGGCCTGAGAGATTTCCTTCAAGGCTTTTGACTAGCATTGTGAAGATTGATTGTTTTTGTCAACCTTTGTGATTAGTGAGTGAACCCAACTTTCATGCTTTGGCGTGGTATTTTACCCTAGAACAATGATGGTGTTTTGCAGGCAGAAGGTGTATACTGCATAGTCTACGACTTAATATTTACCGTTTTTCTGACTAGTTTTCATGCATTATAAACTAGTGGAATTGTGACCAGCACAAATAAGAGGAATCCCCTGAGTTACTTTACTTTCTTAAAGTTCCCACAATTGTATGTTCGTCACAAGAGTTGCGGTGCATCACGGCACTAGGGTAGTTTGGAGGCTGGGTGTGAATTTTGACATGGTGCACTGCAAGATCAACCAGTTCCTAAAAGCACAAGTTTGTTAACTGTGTGAGACTTTTAATGTTGATTGGTAGAACAAATGGTCCCATGGTTCCCTTAATACAAATTGTGGTTGTATCATTAAGGCAGTCTTCTATTTCATCATTGAGTTGTCATCCTCTGTGAAAATGTGATTAGGTCTTCCTTCACTGTATATAGTAGAACTGGAACTGGGTTAGCTGGTATTCAGCCTACAAACCTACTGTTCAGCAATTCAGCTTGGAGTTATATCCATTTACTTGAAAAATTACAACATAATGCAGAATCTGACTAAGTCTCCCTGTGGATGAAACTATATATGTAAATGTTTGTTTTTCTTTTAAGGCTCCGTTTGTCTTGACAGAAAACACTTTTCCGGAAAACTGTTTTCTCATTTTCCTTTGTTTGTTTTGTTAAGGGTGGAAAACAATTTTCCCAAATGTGGAAAACAACTTTCCCTTTGAAAAGAAGCCACATTTTCCACTCTAATCCCTTACATTTCATTTTCCTCTCATTTCCACTTCCATGTTATTTTTCTTTAACACCTCCATTTTTTAATAATTTCACCATCTAGGTTTTAGCACTATTCTCATATAGTTATTTTTTGTGATTTATATGTAAGGAAAAGTATATCCATGTGGGATCTTGTTAGATTCGTCTCGAAATATACTTCCAAATTATCAAATTTTTTATAATCTTTTCAAATGTATAATGAGAAATGTTATTGGTTAAAATAGTGCCTCAGATGGTGCAATAAAAAAAAATGGAGGAACTTGTGAGGTGTTCAACAAAGGAAAACTATTTTCCCTTGAAAAGTGTTTTCCTTTGAAACAAATGAAGCCTAAATTTCTCTGAGATGTGCTCTTCAACCATCTGGAGTCTTGGATACATATTGAATTAGCCCCCTAATCAACCCCCTCATTAACAAACCTAATTAACCCATCCATTAACCCACTAATCCACCCATTTCTTTATGTATCTTCCTTCAGAGATGGGAGACGTAGCAAAGGACCTGACAGCAGGGACTGTCGGAGGGGCGGCACAGCTGGTTGTCGGGCATCCCTTCGACACCATCAAGGTGAAGCTCCAAAGCCAGCCAACTCCTCTTCCTGGCCAAGGTCCCCGGTACTCAGGCGCAATGGATGCCGTGAGGCAAACAATAGCCGCAGAAGGTCCCAAGGGTTTGTACAAAGGTATGGGGGCCCCACTTGCTACTGTTGCGGCTTTCAATGCCGTACTCTTCACGGTTAGAGGCCAAATGGAAACCATGTTAAAGTCAGAACCTGGTGCATCCCTCTCAGTTGGCCAGCAAGTCACATGTGGTGCTGGAGCTGGAGTTGCTGTCTCTTTTTTGGCTTGCCCCACAGAATTAATCAAGTGCAGGTACAATGAAACTGAATTTTGCTTCTTAAGTTTACTTTTCTTCCCTTTTTTTAACCCTCAAAGTTGGTCAGAATTTAGATGTGGTTGTTTGCTTACCTGTATACTTCACTCTCAGGAAGCAAAATGTGACATTGATTACTGGTTTACCTTAATGGGATGTGTTGGCTGGAATACTGTTATCTTCTGGTTGTTTTTGGCAGGAATTTGCTTTGCTGTTGTTTTCTATGTTGGTTTGGCTAACGGTTTCCTCCTACTAGTTATGCGTAGACCTGGTTATTGGACATGGTAGCCCAATGGGTATAGGGTTTGGGTCAAGTTAATAGGGTTCTTATTGGGAAAGAGCTCTTATTGGACAGGGCTCTTATTGAACAGGGTCAATATAGCTCCAAACTTTTTACATAGTAATTCTAAAAATTAAAATAGTTATGATATAAAAAAATTATATGGATAGTTTTGTATTCACTTATTCGCATACGACTCTTTTTTTCCATTTTCCTTGTTTGTTTATTGACTCGCCCACTATCGGTCTGCATATTGACCAGTGACCCGATCTGACCTGTCCATTATTGACCCGTTAAAATTGACTCTTTCATTACCCGACCAGCTTTTGACCCGCACTGACCCTGACCGGACCCGCCCAATAACCAGGTCTAGGACTTATGCGTAAATGGTGCAATTTCTTTTTTATTATTTGTGAAGTTCTTTATCTATTACCCAAAGTAAGAATTTGATTTGTGTCATGTAATCTTATCTAAATTTCACAAAGAATTGATTGTATTACCAATGTTTTATCTGTGTAAGAGTTTGATCAAATTTTCACACTTTTTTCTGACATCCATGGCAAGAACAGGTTACAAGCCCAAAGTTCCGTATCCGGAGTTGGCGCAGCTGCAGTAGCAGTAAAATACGGAGGACCAATAGACGTAGCAAAACAAGTCTTATCAGAAGCAGGTGCAAGAGGTCTCTTCAAAGGCTTGATCCCAACCCTAGCCCGTGAAGTACCAGGAAATGCTGCAATGTTCGGTGTATATGAAGCTGTCAAAATGTACATGGCTGGTGGTCAAGACACTTCCGGGTTAGGTAGAGGCTCGTTGATCATGGCGGGTGGGATAGCCGGGGCTGCCTTTTGGGGGTCCGTTTACCCTGCTGACGTGGTCAAGAGTGTTATTCAAATCGATGATTTTAAGGCACCAAAATATTCAGGGTCTATGAACGCGTTTAAGAAGATATTAGCTGCTGAAGGTGTGAAAGGGTTGTATAAGGGATTTGGTCCGGCAATGTGTCGGAGTATACCGGCGAATGGTGCTTGTTTCTTGGCTTATGAGGTTACTAGGTCTAGTTTAGGGTAGGGTGAATTTTTATGTTCATGTGTTTTTCTTGAATAATATTACCTGATTTGAATTGTTATTGTTGATAATTCTTTCAAACCTTTGCTTCAACTACTCATTTCTTACCCCTTTGAATAAAATTTTGCATAGGAATTATGGTTTATGTTCAATTAACTTTTGTGACTGTGAAGTATGAACATTGGGTTGCAAATGAAGGAGATCACTGGCCAATTACTTGA CTTTTGAGTCAATTTTCAGTGATTGGCCTACCTCGTGTGCTTGCTCACAGGATCATGGAGTATTTATATCACATTCTGTACTCTCTCTCTCCTTCTCCATCCCCACCAAATCGACGGTGACAGATCCCTCTCTCTCTGCAACTGGTGGTGGCGGTTGGTGAAGATAAAGTGTGACTAAATTTATAAAAAAAGCAAAGTTTTTTCTAATAATTGGGGCTGAATTTCATCATCTTTAACCTAAGATCGAGTATTCTGATTGAGTAATTGATTTGGAAGCTTGTTTCTGCTGGGATTTGAGCTTTTCTGACTGTAACTTTGGTTGCATAAGAATTATTAATTGAGATGGGAGACGTAGCAAAGGACCTGACAGCAGGGACTGTCGGAGGGGCGGCACAGCTGGTTGTCGGGCATCCCTTCGACACCATCAAGGTGAAGCTCCAAAGCCAGCCAACTCCTCTTCCTGGCCAAGGTCCCCGGTACTCAGGCGCAATGGATGCCGTGAGGCAAACAATAGCCGCAGAAGGTCCCAAGGGTTTGTACAAAGGTATGGGGGCCCCACTTGCTACTGTTGCGGCTTTCAATGCCGTACTCTTCACGGTTAGAGGCCAAATGGAAACCATGTTAAAGTCAGAACCTGGTGCATCCCTCTCAGTTGGCCAGCAAGTCACATGTGGTGCTGGAGCTGGAGTTGCTGTCTCTTTTTTGGCTTGCCCCACAGAATTAATCAAGTGCAGGTTACAAGCCCAAAGTTCCGTATCCGGAGTTGGCGCAGCTGCAGTAGCAGTAAAATACGGAGGACCAATAGACGTAGCAAAACAAGTCTTATCAGAAGCAGGTGCAAGAGGTCTCTTCAAAGGCTTGATCCCAACCCTAGCCCGTGAAGTACCAGGAAATGCTGCAATGTTCGGTGTATATGAAGCTGTCAAAATGTACATGGCTGGTGGTCAAGACACTTCCGGGTTAGGTAGAGGCTCGTTGATCATGGCGGGTGGGATAGCCGGGGCTGCCTTTTGGGGGTCCGTTTACCCTGCTGACGTGGTCAAGAGTGTTATTCAAATCGATGATTTTAAGGCACCAAAATATTCAGGGTCTATGAACGCGTTTAAGAAGATATTAGCTGCTGAAGGTGTGAAAGGGTTGTATAAGGGATTTGGTCCGGCAATGTGTCGGAGTATACCGGCGAATGGTGCTTGTTTCTTGGCTTATGAGTATGAACATTGGGTTGCAAATGAAGGAGATCACTGGCCAATTACTTGA ATGGGAGACGTAGCAAAGGACCTGACAGCAGGGACTGTCGGAGGGGCGGCACAGCTGGTTGTCGGGCATCCCTTCGACACCATCAAGGTGAAGCTCCAAAGCCAGCCAACTCCTCTTCCTGGCCAAGGTCCCCGGTACTCAGGCGCAATGGATGCCGTGAGGCAAACAATAGCCGCAGAAGGTCCCAAGGGTTTGTACAAAGGTATGGGGGCCCCACTTGCTACTGTTGCGGCTTTCAATGCCGTACTCTTCACGGTTAGAGGCCAAATGGAAACCATGTTAAAGTCAGAACCTGGTGCATCCCTCTCAGTTGGCCAGCAAGTCACATGTGGTGCTGGAGCTGGAGTTGCTGTCTCTTTTTTGGCTTGCCCCACAGAATTAATCAAGTGCAGGTTACAAGCCCAAAGTTCCGTATCCGGAGTTGGCGCAGCTGCAGTAGCAGTAAAATACGGAGGACCAATAGACGTAGCAAAACAAGTCTTATCAGAAGCAGGTGCAAGAGGTCTCTTCAAAGGCTTGATCCCAACCCTAGCCCGTGAAGTACCAGGAAATGCTGCAATGTTCGGTGTATATGAAGCTGTCAAAATGTACATGGCTGGTGGTCAAGACACTTCCGGGTTAGGTAGAGGCTCGTTGATCATGGCGGGTGGGATAGCCGGGGCTGCCTTTTGGGGGTCCGTTTACCCTGCTGACGTGGTCAAGAGTGTTATTCAAATCGATGATTTTAAGGCACCAAAATATTCAGGGTCTATGAACGCGTTTAAGAAGATATTAGCTGCTGAAGGTGTGAAAGGGTTGTATAAGGGATTTGGTCCGGCAATGTGTCGGAGTATACCGGCGAATGGTGCTTGTTTCTTGGCTTATGAGTATGAACATTGGGTTGCAAATGAAGGAGATCACTGGCCAATTACTTGA MGDVAKDLTAGTVGGAAQLVVGHPFDTIKVKLQSQPTPLPGQGPRYSGAMDAVRQTIAAEGPKGLYKGMGAPLATVAAFNAVLFTVRGQMETMLKSEPGASLSVGQQVTCGAGAGVAVSFLACPTELIKCRLQAQSSVSGVGAAAVAVKYGGPIDVAKQVLSEAGARGLFKGLIPTLAREVPGNAAMFGVYEAVKMYMAGGQDTSGLGRGSLIMAGGIAGAAFWGSVYPADVVKSVIQIDDFKAPKYSGSMNAFKKILAAEGVKGLYKGFGPAMCRSIPANGACFLAYEYEHWVANEGDHWPIT Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Spo23392.1 vs. NCBI nr
Match: gi|902210448|gb|KNA16433.1| (hypothetical protein SOVF_089040 [Spinacia oleracea]) HSP 1 Score: 563.9 bits (1452), Expect = 1.700e-157 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
BLAST of Spo23392.1 vs. NCBI nr
Match: gi|731332510|ref|XP_010677244.1| (PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 515.0 bits (1325), Expect = 8.900e-143 Identity = 259/289 (89.62%), Postives = 274/289 (94.81%), Query Frame = 1
BLAST of Spo23392.1 vs. NCBI nr
Match: gi|720061575|ref|XP_010275212.1| (PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Nelumbo nucifera]) HSP 1 Score: 483.8 bits (1244), Expect = 2.200e-133 Identity = 241/290 (83.10%), Postives = 268/290 (92.41%), Query Frame = 1
BLAST of Spo23392.1 vs. NCBI nr
Match: gi|747098827|ref|XP_011097444.1| (PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Sesamum indicum]) HSP 1 Score: 481.9 bits (1239), Expect = 8.400e-133 Identity = 239/290 (82.41%), Postives = 266/290 (91.72%), Query Frame = 1
BLAST of Spo23392.1 vs. NCBI nr
Match: gi|802622472|ref|XP_012076240.1| (PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]) HSP 1 Score: 480.7 bits (1236), Expect = 1.900e-132 Identity = 237/290 (81.72%), Postives = 267/290 (92.07%), Query Frame = 1
BLAST of Spo23392.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA88_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_089040 PE=3 SV=1) HSP 1 Score: 563.9 bits (1452), Expect = 1.200e-157 Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 1
BLAST of Spo23392.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F6T5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106010 PE=3 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 6.200e-143 Identity = 259/289 (89.62%), Postives = 274/289 (94.81%), Query Frame = 1
BLAST of Spo23392.1 vs. UniProtKB/TrEMBL
Match: A0A067KDN2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12674 PE=3 SV=1) HSP 1 Score: 480.7 bits (1236), Expect = 1.300e-132 Identity = 237/290 (81.72%), Postives = 267/290 (92.07%), Query Frame = 1
BLAST of Spo23392.1 vs. UniProtKB/TrEMBL
Match: I1J4W1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_01G019000 PE=3 SV=1) HSP 1 Score: 479.9 bits (1234), Expect = 2.200e-132 Identity = 236/290 (81.38%), Postives = 269/290 (92.76%), Query Frame = 1
BLAST of Spo23392.1 vs. UniProtKB/TrEMBL
Match: A0A068UCV6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023067001 PE=3 SV=1) HSP 1 Score: 479.2 bits (1232), Expect = 3.800e-132 Identity = 237/289 (82.01%), Postives = 265/289 (91.70%), Query Frame = 1
BLAST of Spo23392.1 vs. ExPASy Swiss-Prot
Match: MCAT_ARATH (Mitochondrial carnitine/acylcarnitine carrier-like protein OS=Arabidopsis thaliana GN=BOU PE=2 SV=1) HSP 1 Score: 439.1 bits (1128), Expect = 3.900e-122 Identity = 220/293 (75.09%), Postives = 250/293 (85.32%), Query Frame = 1
BLAST of Spo23392.1 vs. ExPASy Swiss-Prot
Match: MCFS_DICDI (Mitochondrial substrate carrier family protein S OS=Dictyostelium discoideum GN=mcfS PE=3 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 3.500e-54 Identity = 125/288 (43.40%), Postives = 162/288 (56.25%), Query Frame = 1
BLAST of Spo23392.1 vs. ExPASy Swiss-Prot
Match: DIF1_CAEEL (Protein dif-1 OS=Caenorhabditis elegans GN=dif-1 PE=2 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 7.800e-54 Identity = 119/292 (40.75%), Postives = 171/292 (58.56%), Query Frame = 1
BLAST of Spo23392.1 vs. ExPASy Swiss-Prot
Match: MCFG_DICDI (Mitochondrial substrate carrier family protein G OS=Dictyostelium discoideum GN=mcfG PE=2 SV=1) HSP 1 Score: 208.0 bits (528), Expect = 1.500e-52 Identity = 115/291 (39.52%), Postives = 162/291 (55.67%), Query Frame = 1
BLAST of Spo23392.1 vs. ExPASy Swiss-Prot
Match: MCAT_MOUSE (Mitochondrial carnitine/acylcarnitine carrier protein OS=Mus musculus GN=Slc25a20 PE=1 SV=1) HSP 1 Score: 194.9 bits (494), Expect = 1.300e-48 Identity = 122/298 (40.94%), Postives = 165/298 (55.37%), Query Frame = 1
BLAST of Spo23392.1 vs. TAIR (Arabidopsis)
Match: AT5G46800.1 (Mitochondrial substrate carrier family protein) HSP 1 Score: 439.1 bits (1128), Expect = 2.200e-123 Identity = 220/293 (75.09%), Postives = 250/293 (85.32%), Query Frame = 1
BLAST of Spo23392.1 vs. TAIR (Arabidopsis)
Match: AT2G33820.1 (Mitochondrial substrate carrier family protein) HSP 1 Score: 165.6 bits (418), Expect = 4.700e-41 Identity = 103/292 (35.27%), Postives = 149/292 (51.03%), Query Frame = 1
BLAST of Spo23392.1 vs. TAIR (Arabidopsis)
Match: AT1G79900.1 (Mitochondrial substrate carrier family protein) HSP 1 Score: 149.8 bits (377), Expect = 2.700e-36 Identity = 99/290 (34.14%), Postives = 145/290 (50.00%), Query Frame = 1
BLAST of Spo23392.1 vs. TAIR (Arabidopsis)
Match: AT1G25380.1 (NAD+ transporter 2) HSP 1 Score: 129.0 bits (323), Expect = 4.900e-30 Identity = 93/293 (31.74%), Postives = 142/293 (48.46%), Query Frame = 1
BLAST of Spo23392.1 vs. TAIR (Arabidopsis)
Match: AT2G47490.1 (NAD+ transporter 1) HSP 1 Score: 114.4 bits (285), Expect = 1.200e-25 Identity = 86/294 (29.25%), Postives = 134/294 (45.58%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23392.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23392.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23392.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo23392.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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