Spo23462.1 (mRNA) | SpinachBase

Overview


Name	Spo23462.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Methyltransferase-related protein, putative
Location	Super_scaffold_88 : 201636 .. 202647 (+)
Sequence length	894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAACGTATTCTTATAAGACGAACATAACATAACGTACTCTAAATGGTTATGCGGCTTACACCATCATTAGTTCGTTACAATTTGTTTCCCAAATCATCCCCCGCAAATCCGCAATTGATGCTCTTACAGTTACACCAGACAGGGTTGTTAGCACCGGATAATTTCCAGACCACGGTAAACTAATTTTCTAGGGAAAGAGACAATTTGAGAGCGAGCGTTGAACAACCACACGCCCTCTCCTCCTTCACTCCAGAAGCTTGAATATTACTCCTTTTTTCCCTTTTTGCTAATTTCAATCAAACCCTAATCTCCCTCTCTCTCCTTATCTGCCATCTGGTGGTTGGTGAATTTGTGAAATTTGCAGAAATCAAATGTGTCCACTCAGAATCATTTTGATTTTTCTGTCAGCTACTCTCGCCGGATTCTTTGTGCTCAAGAATCTCAATTCTTCCAATGACGTCGATCTCAATCTTCGTCCCGATTCTCCTAAACCTACCGATTCTACTCCGTCTTCCTGCAAGGTATTTTCAATTTCTCTATTTTCTTCTTTTAATCCGATTTTAGGGTTTTAATTAGATTTTATGGTATTATTATTGATTATTAGAACTAATTTGAAAATTTATTTTGTTTGAATTGAAGGCTAAGGTAATGTCGGCAATTGGTTCGGGTTTCTGGACGATTGTGGATATGGCGAGCGGTCGCTATCTCTGGAACTATTTCTCTGCTGCTACAGCTAAGAGCTCGCCTTAATTCTTTTTCGAGGCAGTATAGTATGTATTGTTGTTGTAGTTGTTGTTGTTGGTGGTGATGATGTTTCTGGTAATTTGAAGAAGATGCATTGTTGGTAACTGTAACTAAGGCCAAGGATGATTATGATGATTGTTGGCTAATAACTCAATTGATGTATTGCTGTAATTTTCTACAACTTCGTATGTATATACACTAATACACATGTTTGTTACTGATATAAAATCGTTCAATTTTCTACTTATGCTATGATGTTTGTTTG

mRNA sequence

CGTAAACGTATTCTTATAAGACGAACATAACATAACGTACTCTAAATGGTTATGCGGCTTACACCATCATTAGTTCGTTACAATTTGTTTCCCAAATCATCCCCCGCAAATCCGCAATTGATGCTCTTACAGTTACACCAGACAGGGTTGTTAGCACCGGATAATTTCCAGACCACGGTAAACTAATTTTCTAGGGAAAGAGACAATTTGAGAGCGAGCGTTGAACAACCACACGCCCTCTCCTCCTTCACTCCAGAAGCTTGAATATTACTCCTTTTTTCCCTTTTTGCTAATTTCAATCAAACCCTAATCTCCCTCTCTCTCCTTATCTGCCATCTGGTGGTTGGTGAATTTGTGAAATTTGCAGAAATCAAATGTGTCCACTCAGAATCATTTTGATTTTTCTGTCAGCTACTCTCGCCGGATTCTTTGTGCTCAAGAATCTCAATTCTTCCAATGACGTCGATCTCAATCTTCGTCCCGATTCTCCTAAACCTACCGATTCTACTCCGTCTTCCTGCAAGGCTAAGGTAATGTCGGCAATTGGTTCGGGTTTCTGGACGATTGTGGATATGGCGAGCGGTCGCTATCTCTGGAACTATTTCTCTGCTGCTACAGCTAAGAGCTCGCCTTAATTCTTTTTCGAGGCAGTATAGTATGTATTGTTGTTGTAGTTGTTGTTGTTGGTGGTGATGATGTTTCTGGTAATTTGAAGAAGATGCATTGTTGGTAACTGTAACTAAGGCCAAGGATGATTATGATGATTGTTGGCTAATAACTCAATTGATGTATTGCTGTAATTTTCTACAACTTCGTATGTATATACACTAATACACATGTTTGTTACTGATATAAAATCGTTCAATTTTCTACTTATGCTATGATGTTTGTTTG

Coding sequence (CDS)

ATGTGTCCACTCAGAATCATTTTGATTTTTCTGTCAGCTACTCTCGCCGGATTCTTTGTGCTCAAGAATCTCAATTCTTCCAATGACGTCGATCTCAATCTTCGTCCCGATTCTCCTAAACCTACCGATTCTACTCCGTCTTCCTGCAAGGCTAAGGTAATGTCGGCAATTGGTTCGGGTTTCTGGACGATTGTGGATATGGCGAGCGGTCGCTATCTCTGGAACTATTTCTCTGCTGCTACAGCTAAGAGCTCGCCTTAA

Protein sequence

MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSGFWTIVDMASGRYLWNYFSAATAKSSP

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23462	Spo23462	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23462.1	Spo23462.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23462.1.exon.1	Spo23462.1.exon.1	exon
Spo23462.1.exon.2	Spo23462.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23462.1.utr5p.1	Spo23462.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23462.1.CDS.1	Spo23462.1.CDS.1	CDS
Spo23462.1.CDS.2	Spo23462.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23462.1.utr3p.1	Spo23462.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo23462.1 vs. NCBI nr
Match: gi|902142632|gb|KNA04788.1| (hypothetical protein SOVF_196480 [Spinacia oleracea])

HSP 1 Score: 172.2 bits (435), Expect = 4.000e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG
Sbjct: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60

Query: 61 FWTIVDMASGRYLWNYFSAATAKSSP 87
          FWTIVDMASGRYLWNYFSAATAKSSP
Sbjct: 61 FWTIVDMASGRYLWNYFSAATAKSSP 86

[Close]

BLAST of Spo23462.1 vs. NCBI nr
Match: gi|731349386|ref|XP_010685967.1| (PREDICTED: uncharacterized protein LOC104900277 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 125.2 bits (313), Expect = 5.600e-26
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLRIILIFLSATLAGF VLKN  S++DVDLN  PDSPKP  S  SSCK KVMSAIGS 
Sbjct: 1  MCPLRIILIFLSATLAGFLVLKNFKSADDVDLNHLPDSPKPNSS--SSCKEKVMSAIGSS 60

Query: 61 FWTIVDMASGRYLWNYFSAAT-AKSSP 87
          FW IVDMASGRYLW YF  AT  KSSP
Sbjct: 61 FWMIVDMASGRYLWRYFGGATRPKSSP 85

[Close]

BLAST of Spo23462.1 vs. NCBI nr
Match: gi|297745780|emb|CBI15836.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-16
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1


		  
Query: 1   MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPK----PTDSTPSSCKAKVMSA 60
           MCPLR+ILIFLSATLAGFFVL+NL S   V  +   D  +    P DSTP S  +KV+SA
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDNDPHDSTPKS--SKVLSA 92

Query: 61  IGSGFWTIVDMASGRYLWNYFSAATAKS 85
           IGSGFWT VDMASGRYLW +  +++  S
Sbjct: 93  IGSGFWTCVDMASGRYLWRHLVSSSKPS 118

[Close]

BLAST of Spo23462.1 vs. NCBI nr
Match: gi|225434367|ref|XP_002269081.1| (PREDICTED: uncharacterized protein LOC100267277 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 1.400e-16
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPK----PTDSTPSSCKAKVMSA 60
          MCPLR+ILIFLSATLAGFFVL+NL S   V  +   D  +    P DSTP S  +KV+SA
Sbjct: 1  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDNDPHDSTPKS--SKVLSA 60

Query: 61 IGSGFWTIVDMASGRYLWNYFSAATAKS 85
          IGSGFWT VDMASGRYLW +  +++  S
Sbjct: 61 IGSGFWTCVDMASGRYLWRHLVSSSKPS 86

[Close]

BLAST of Spo23462.1 vs. NCBI nr
Match: gi|922566491|ref|XP_013611529.1| (PREDICTED: uncharacterized protein LOC106318198 [Brassica oleracea var. oleracea])

HSP 1 Score: 91.3 bits (225), Expect = 9.000e-16
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLN--LRPDSPKPTDSTPSSCKAKVMSAIG 60
          MCPLR+ILIFLSATLAGFFVLK LN+S D  L   L    P   DS  +S  +KV +A+ 
Sbjct: 1  MCPLRLILIFLSATLAGFFVLKKLNTSYDDPLADPLAEADPVDADSDSNSRFSKVGTAMK 60

Query: 61 SGFWTIVDMASGRYLWNYFSAATAKSS 86
          SGFWT VDMASGRYLWN+  + + KSS
Sbjct: 61 SGFWTCVDMASGRYLWNHLCSNSDKSS 87

[Close]

BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDM2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_196480 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.800e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG
Sbjct: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60

Query: 61 FWTIVDMASGRYLWNYFSAATAKSSP 87
          FWTIVDMASGRYLWNYFSAATAKSSP
Sbjct: 61 FWTIVDMASGRYLWNYFSAATAKSSP 86

[Close]

BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZR5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175700 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 3.900e-26
Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLRIILIFLSATLAGF VLKN  S++DVDLN  PDSPKP  S  SSCK KVMSAIGS 
Sbjct: 1  MCPLRIILIFLSATLAGFLVLKNFKSADDVDLNHLPDSPKPNSS--SSCKEKVMSAIGSS 60

Query: 61 FWTIVDMASGRYLWNYFSAAT-AKSSP 87
          FW IVDMASGRYLW YF  AT  KSSP
Sbjct: 61 FWMIVDMASGRYLWRYFGGATRPKSSP 85

[Close]

BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: D7SJL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07850 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.700e-17
Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1


		  
Query: 1   MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPK----PTDSTPSSCKAKVMSA 60
           MCPLR+ILIFLSATLAGFFVL+NL S   V  +   D  +    P DSTP S  +KV+SA
Sbjct: 33  MCPLRLILIFLSATLAGFFVLRNLKSQPQVVADAPADGDRDDNDPHDSTPKS--SKVLSA 92

Query: 61  IGSGFWTIVDMASGRYLWNYFSAATAKS 85
           IGSGFWT VDMASGRYLW +  +++  S
Sbjct: 93  IGSGFWTCVDMASGRYLWRHLVSSSKPS 118

[Close]

BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: D7MQC5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495954 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.300e-16
Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLR+ILIFLSATLAGFFVL+ LNS++D  L+      +P D    S  +KV  A+ SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEPADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTIVDMASGRYLWNYFSAATAKSS 86
          FWT VDMASGRYLWN  S+ + +SS
Sbjct: 61 FWTCVDMASGRYLWNNLSSVSKRSS 85

[Close]

BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: V4LRR7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015157mg PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.300e-16
Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLR+ILIFLSATLAGFFVLK LNS +D  L        P+DS   S  +KV  A+ SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLKKLNSPSDDPLADPLTDADPSDSDSDSKFSKVGMAMKSG 60

Query: 61 FWTIVDMASGRYLWNYFSAATAKSS 86
          FWT VDMASGRYLWN+  + + +SS
Sbjct: 61 FWTCVDMASGRYLWNHLCSNSDRSS 85

[Close]

BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Match: AT5G58375.1 (Methyltransferase-related protein)

HSP 1 Score: 84.7 bits (208), Expect = 3.000e-17
Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCPLR+ILIFLSATLAGFFVL+ LNS++D  L+      +  D    S  +KV  A+ SG
Sbjct: 1  MCPLRLILIFLSATLAGFFVLQKLNSTSDDPLDDSFTDAEHADDDSVSGFSKVGMAMKSG 60

Query: 61 FWTIVDMASGRYLWNYFSAATAKSS 86
          FWT VDMASGRYLWN   +   +SS
Sbjct: 61 FWTCVDMASGRYLWNNLCSNAKRSS 85

[Close]

BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Match: AT5G18150.1 (Methyltransferase-related protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.300e-9
Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSG 60
          MCP+R +L+F SA LAG+F  K ++SS +       DSP   D      +  +   + +G
Sbjct: 1  MCPMRFLLVFFSAVLAGYFAWKTVSSSPEF------DSP---DELNEKQELNLKKKMENG 60

Query: 61 FWTIVDMASGRYLWNYFSAATAKS 85
          FW  VDMASGRYLW        KS
Sbjct: 61 FWVFVDMASGRYLWRNLKEMREKS 75

[Close]

BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 51.2 bits (121), Expect = 3.600e-7
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1


		  
Query: 1  MCPLRIILIFLSATLAGFFVLKNLNSSNDV--DLNLRPDSPKPTDSTPSSCKAKVMSAIG 60
          MCPLR +L+F SA LAG+   + +NS+ ++  D  L+ ++    +      K K    + 
Sbjct: 1  MCPLRFVLVFFSAVLAGYIAWRTVNSTPELFSDELLQAEA---KEKQGLDFKRK----MD 60

Query: 61 SGFWTIVDMASGRYLW 75
          +G WT VDMASGRYLW
Sbjct: 61 NGLWTFVDMASGRYLW 69

The following BLAST results are available for this feature:

BLAST of Spo23462.1 vs. NCBI nr
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
BLAST of Spo23462.1 vs. ExPASy Swiss-Prot
BLAST of Spo23462.1 vs. TAIR (Arabidopsis)

BLAST of Spo23462.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902142632\|gb\|KNA04788.1\|	4.0e-40	100.	hypothetical protein SOVF_1964...	[more]
gi\|731349386\|ref\|XP_010685967.1\|	5.6e-26	78.1	PREDICTED: uncharacterized pro...	[more]
gi\|297745780\|emb\|CBI15836.3\|	1.4e-16	60.2	unnamed protein product [Vitis...	[more]
gi\|225434367\|ref\|XP_002269081.1\|	1.4e-16	60.2	PREDICTED: uncharacterized pro...	[more]
gi\|922566491\|ref\|XP_013611529.1\|	9.0e-16	60.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QDM2_SPIOL	2.8e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BZR5_BETVU	3.9e-26	78.1	Uncharacterized protein OS=Bet...	[more]
D7SJL0_VITVI	9.7e-17	60.2	Putative uncharacterized prote...	[more]
D7MQC5_ARALL	6.3e-16	58.8	Putative uncharacterized prote...	[more]
V4LRR7_EUTSA	6.3e-16	60.0	Uncharacterized protein OS=Eut...	[more]

BLAST of Spo23462.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G58375.1	3.0e-17	56.4	Methyltransferase-related prot...	[more]
AT5G18150.1	1.3e-9	40.4	Methyltransferase-related prot...	[more]
AT5G14602.1	3.6e-7	40.7	FUNCTIONS IN: molecular_functi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34132	FAMILY NOT NAMED	coord: 2..75 score: 1.1
None	No IPR available	PANTHER	PTHR34132:SF2	SUBFAMILY NOT NAMED	coord: 2..75 score: 1.1