Spo23489.1 (mRNA)

Overview
NameSpo23489.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 25747560 .. 25751001 (-)
Sequence length1018
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATATGCTTCCTGATATTGAGAAGATTCACACGGTAAAATTGTTTGTTCTTTACTAACTCTTAATTTGACTGAGTAAAGCAAGTTTCTATTATTAAGAAGATTTACCTATAAATGTAGCTTTGTTAGAGTCATAGCTTGTAAAATGATGGCGTATCTCCAAATTTATTCTTAATAATTGATTAGATTATTGGAAGGTATATTATATGAACACCTTTAGTAAACCATGTCACCACTACTACTACTTTACACACTACTCGCTTGTCATCGTGTGAATTTAGCTATGTAGATTTGTTTTGGGAAGAATAACTCCACATTAACCAGGAGTATCAGTTGAACTTACTTAAAGCTATTTGAGATTTGTACATGGCTACTGAAGAACCATGTTAGAGTGTTCATTATTCAGACATGTTTGACCTTAATGTTTACCAAACTGTCAGAATCCTTGATAATTGTTCTTCCAAAATTTTCTTCGGGTCTTTGCATTGGGTTGGTCCTTCAGTTACTAAATATTTTCATTTTTAATTCATATCATCCAATTGTAATCATTTAAATGGAATGATCCAATCAAAACAACAGACGACAACTTACTGAATTTAAAGAACAAAGCTTCACTTAACTCATAACACCTATCGCCCAAGGAATCAAGAAAACCAAGCAAAATTCAGTCAGAATAAGAGAAGAAAACTTACAGAATACAGTCAATATTTCCTTCTTAAGAGGACAGTAAGCCAACTATACAAGAAAGTTTCAGCAATAATACAAGCTAAATTATAACCGTTGAACTTTAATCATACATGATACTCAAAGTTCAACTCAAAATTTGCCTTCTTACTTAAAGGAAGCATTCTCCATTTTATGATCTTGATGTATCTCCTGAGTTAAATGAGATGTACTTTTATGTTATTCCATTTTGGGGTTTGCATGAAGAATAGGCATGCTTCAGTTTGAGATGGTTATGTTCATGTGCTTGTTTGAGTACTAATTAAGATTTTGTCTTTATAGTGCCAAAATTCATTAAATGTTGCTATAATTTTAGTTACCTGACTTAATGGGTGCGCGTTTTGGGTGACAGTTTTTTTTATCTCTCTGGTTTCGATGAATGGTTTGGCTTTGGGTTTAACAAAAGAACGAAAGGAAATGAAACCCATGAAGCTGAGATAGAGGTCTAAGGCGAGCGCTTGATCCCTCTTTGTGCAAGGTATCTTAAACTTCTCATGATATTGTCATTCATACTTCAATTCAGATTGCTGATATGCTATGTCAAAACTTGATATATGTTTGTTTAATTGTGGTGTAGTCAGATGCATAACTCAGTTAGAAAAAAAAAACATGATTAATTTCCAGGAGATAAAAAGGATTCAGGTCTCTAGGATAGGAAGTAGTTATATGTTCTTAGTTTCTTATATTGCCATTATTTTCGGTTTACTTGCTTAAAGATGAAATACATGATTTATCTTTGACTTTGTAATTAAGCACCACTGAATTTGAAGTAAATGAAATATTCAACCTTTCCATCTTTTTGTTGAGACATTGTATTTTATTTCTTGTAAATTTTGATGCAGGACAGTCTTATCTTTAGCCTGCCAGACCTTCAACAATGGTTTCGAATCTGTCGTACCATGAAACTCGATTAAACCCATGTGTTGCGGCGTTGCGCTACCGTCATTAGATGATGATCTTGATCTGGGTGTTATTAAGAAATTCCTTCGATCCAGAGTTGTTTTAAGAGATTAATGATATATATGGAGGGAAGTTGATCTCATCTCAAAAATCAAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTCATAGTGTCTGTGCTATGCCTATGGAGTAAATTGAAGGTAACACTCTGTCTAGATATATTTGAAAATTCATGTAGTACTATCAAACCTCGATGGTCCTTGAGTAGTTCCCTTCCTATTTTTAGAACCCTAACAAGCATAAGAAAATTAGTTGGTCTTTGAGTAGTTGAGCCAAGCGAGTTTTCTTGTGGCTTGTTAAGCTTTATGTTTCCTTGTGTGGAGAGTTTCATATGGAAAATCAACAAAATTTCCCTATATCTGGTTGTTTCGAAGCTGAGATTTGGAGCTAAAAGATTTATCATTGAATCAATATGATTAATCTCACATTGATGAATCGTGACCTTCCGTGAAGATCTGACAATATAGAACTGAGTAAAACTCTGCTATGGACCCTATATTTGTGTTTCAGATTCTATTGGAGGCTGCATCGATTATAAGCATTTTAGACAATCTATGTGTTGTCTTTCAATAGACAATTATTTATTAGGTATGTGCAGATTATGTAGGAGATACTTCATTAACTCTTAAACTTGTACTTCTGAGTACTGGTGAGTAATAATGTAGAAAATATAGTGCTTCTGTTACCGTGACTATCTTTCTGCTACCCTAAAACTTCATAAAATGACCTTTCTGCTATCGTAGTTAACTGATTCATGTTCATCTTTGTGCATCTTTCGTTAGGTAATTGCTGAAATGACCATGGAGGTGTGGACAGAAATGTTGAATGCACTGGAAATAGTTAATTCATCACATCCACTTTTGAATGTGTTCATGACGTATGTTCTCGGTAACTTCATAACAACATTAGAATATAGTCCCCTGCCTCTATACCTTATAGTATAAAGTTTCGGACTATAGATCGAATATATTGATTTAATGTTGTATGGATTTGATCTGACTTCAGGGTTGAGGTGTTGTTCTTGTTGTTGTCCGGTTGTCCCCAACAAAAGACTCATCAAACTTTTCAGAAACTATAAGCCTCACACTGAAGAAGTACATGAACAAGGTAAGAATGCCAATCTTGCTCCCTTTCAGAAACAACTTTTCAATTACTAATATATGAGGTCATAAGAAAACTTATGACATGATGCAGAAATTCATTACACTTAAGTCTCTTTCGAGGATATCAACAAGGCTTTTGACCTCATGTTGAAGGGTGAAAGCATCAAAGTATTAGGTGCATTATCTACATGGATGCTTGAAGTGGGAAATGGTGCCCTACCTATGAGTGAAATATCTATTAAAGTAGTCTGTTCTCTTTCATCTTACCTTAGATGTATATCTATGAGTTCTCTCCATAGTACGAGCGTCTAAATTCCGTATATCACAATCGAGGACGCGACAATATAATTACAGGCTTTTGTTATTCTTTATTAGTTCTCTAATTATCAGTTGTAAAATTTATGGCTTTTCTGAAGGATGATTTCATTAATATTTTATCTAAGAAGATTTTACAATAACAATTGTCGAGAGTTTAATGTTGCACGTGGATGCTAAGATTTCTATGAGACTTATATTGTAAACGTATTTATGATTCATTTTATTAATTACATGCGTATCGACTTTGACATTGTTTTTCTA

mRNA sequence

ATGATATGCTTCCTGATATTGAGAAGATTCACACGTTTTTTTTATCTCTCTGGTTTCGATGAATGGTTTGGCTTTGGGTTTAACAAAAGAACGAAAGGAAATGAAACCCATGAAGCTGAGATAGAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTCATAGTGTCTGTGCTATGCCTATGGAGTAAATTGAAGGTAATTGCTGAAATGACCATGGAGGTGTGGACAGAAATGTTGAATGCACTGGAAATAGTTAATTCATCACATCCACTTTTGAATGTGTTCATGACGGTTGAGGTGTTGTTCTTGTTGTTGTCCGGTTGTCCCCAACAAAAGACTCATCAAACTTTTCAGAAACTATAAGCCTCACACTGAAGAAGTACATGAACAAGGTAAGAATGCCAATCTTGCTCCCTTTCAGAAACAACTTTTCAATTACTAATATATGAGGTCATAAGAAAACTTATGACATGATGCAGAAATTCATTACACTTAAGTCTCTTTCGAGGATATCAACAAGGCTTTTGACCTCATGTTGAAGGGTGAAAGCATCAAAGTATTAGGTGCATTATCTACATGGATGCTTGAAGTGGGAAATGGTGCCCTACCTATGAGTGAAATATCTATTAAAGTAGTCTGTTCTCTTTCATCTTACCTTAGATGTATATCTATGAGTTCTCTCCATAGTACGAGCGTCTAAATTCCGTATATCACAATCGAGGACGCGACAATATAATTACAGGCTTTTGTTATTCTTTATTAGTTCTCTAATTATCAGTTGTAAAATTTATGGCTTTTCTGAAGGATGATTTCATTAATATTTTATCTAAGAAGATTTTACAATAACAATTGTCGAGAGTTTAATGTTGCACGTGGATGCTAAGATTTCTATGAGACTTATATTGTAAACGTATTTATGATTCATTTTATTAATTACATGCGTATCGACTTTGACATTGTTTTTCTA

Coding sequence (CDS)

ATGATATGCTTCCTGATATTGAGAAGATTCACACGTTTTTTTTATCTCTCTGGTTTCGATGAATGGTTTGGCTTTGGGTTTAACAAAAGAACGAAAGGAAATGAAACCCATGAAGCTGAGATAGAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTTTCCCTGGAAAAAAAAAAGAAGCAAAGTTGGCTTTCATAGTGTCTGTGCTATGCCTATGGAGTAAATTGAAGGTAATTGCTGAAATGACCATGGAGGTGTGGACAGAAATGTTGAATGCACTGGAAATAGTTAATTCATCACATCCACTTTTGAATGTGTTCATGACGGTTGAGGTGTTGTTCTTGTTGTTGTCCGGTTGTCCCCAACAAAAGACTCATCAAACTTTTCAGAAACTATAA

Protein sequence

MICFLILRRFTRFFYLSGFDEWFGFGFNKRTKGNETHEAEIEQSWLFPWKKKRSKVGFFPGKKKEAKLAFIVSVLCLWSKLKVIAEMTMEVWTEMLNALEIVNSSHPLLNVFMTVEVLFLLLSGCPQQKTHQTFQKL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23489Spo23489gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23489.1Spo23489.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23489.1.CDS.5Spo23489.1.CDS.5CDS
Spo23489.1.CDS.4Spo23489.1.CDS.4CDS
Spo23489.1.CDS.3Spo23489.1.CDS.3CDS
Spo23489.1.CDS.2Spo23489.1.CDS.2CDS
Spo23489.1.CDS.1Spo23489.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23489.1.utr3p.1Spo23489.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23489.1.exon.5Spo23489.1.exon.5exon
Spo23489.1.exon.4Spo23489.1.exon.4exon
Spo23489.1.exon.3Spo23489.1.exon.3exon
Spo23489.1.exon.2Spo23489.1.exon.2exon
Spo23489.1.exon.1Spo23489.1.exon.1exon


Homology
The following BLAST results are available for this feature:
BLAST of Spo23489.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23489.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23489.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23489.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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