Spo23536.1 (mRNA)

Overview
NameSpo23536.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionMyb-like transcription factor family protein
Locationchr6 : 24548970 .. 24554117 (+)
Sequence length2281
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGTATAACTATGGATTCCGGCCGTGTATGCTTGATGGGTGACCAAAATTTCCATCGTTGCCCATTCATGTGTTGGTCATGTGACCCTTAAACAAAGCCATCTCCCTCGATTTTGCTCGCTCAATTTCCCAACCTTCACTTACTTTACTTTGTTTCTCTCCCTTCTGTTCTCGATTCTCCTAAAAAAAAAAATACAAAAATCCAATTCTCAAATTAATTGATAATTTCCTCTTAGCTTTCAAATTGTCACCGAAATCGAAGGCTTGGAAGCTCCACTGTTGACTCACTCATTTTAGCAAAGTTGTTGTTTGGGTTTCTAGCAATAAAGATAGAAGTTCAATAATTTGTTGCAAAATCGTGAAATTAGTCTAGAGTTTTGCTATGTAACCTATGCAAGAGAATGAAGGTGCAGATTTTTTTGTTTGCATGTTTAATTAGTTAAAAAAGAGGTAGTACTGTTTTTCTGGGTTTGAAGATAAAAAAGGAACTGGGATTTCTGGGTTTTTTTTGGTTTTGTCGGGTTGGGAATACGTGACATGTGAGTTGTTGATTACATATGGGATTGAACTCACTGAAAATTATGTGTTTGTGGGTTTGAGTTTTGATAATGTCATGGGAAAATGTAAGGTATTTTGGGGTGCACAGAAGGTGTTTGATGAAATGTTTGGGAGAAATGTTGTTTCTTGGACTTGTATCCCGTGTATGCTTGATGGGTATGTTTATTGTGAGGACTTGATTAGTGGCGAAAGGGAGTTGGATGCAATGCCGAAGAGAAATCAGGTCTCATGGAATGCCATGATATTGAAGCAGAAGACAGAGATGAAGCAGAGAGCTCAAAGAGGAAGAAGGGAAAATCAAAGGAGAAAGGAAGGAAGCAAAGGAGGGAAAACTAAAAAAACAAGGAAAAATCTTGTATAAAATGGACATGTTGATTGACATATTAGTCAATTCCAACTCGATACGACGACACGGCCTGAACCATCTCTACAGAGAAGTATCTGGGAAAGAAAGGGGAGCTTAAATAATAATTGCTGACGTGGTATAACCGTCAGGAAAATACTGTTGCGAGAATTGAAGCCCATTTATGTTTTGGCGCTCAAAAACACAATTCAACTCTTTCCCCTGTTACTCTTCTCTGATCAAACCCAAACACTAAAACATTCAAGAACAAATTCTCTCTCCTCCCCCTGTAACTCAACTCTGATTAAACCCAAACGCTAAAATCTTTCAAGATTGTAATCGCCATGGATAACGGGAAGGGCAAGAACAAAGTAGATGAATACGATCAAGAACAGAATTATGAAGATGAATCTGGCGTAAGTTCTTCACTCAATTCTTTAACTGGGTTTTATTTTTAGATTCTTAATGTTAGTCTTCTCCAATTTCTTTTGCATGATCGAATTTCTGTTAATGATATCTTACGAGTGAATAGTGCTTCATTCAACTTGGTGTTTACTTTCCTGATTAGTTTCTTCCATTTTTATCATCATTTACTGTCCTGGTCAGAATATTAGTGAAATCATCCTGTCGTACTTGTGTTCAATTGATTATTTTGAATGTTATGGATGTTGAGGATGTTCTTGAGTCTGGCTTTGATGATAATGAGACTGGCTCTGATGTAATAATATTGATGTAATAATATTTACCTCTCAATTTACTTCTGCATTATCGTTTTTCTGGGTTAATTGAACCTTCTGAATGACTTTTAATGGCGAATTAACAGAAAAGAATCAAAGGGGTACGTGTTAAAATTATAAAGTCACGAATGGCCGCCATTACTAAGCTTCGTTTTCACTCATGGAGTTCCACTAACTATGACATTACATCATCTAACTATAACTACGACTTACAAAAACAGTAATATGCCCATGTACATCCTCCAAACAACTTCTTGTTTCTGAATCACCAACTTTGTGGCTTTATTCAACTTGGCATAAACTAGAACAAAAGCTTAGTTTCTTAGGATTTTGGTTTATGTTTTTAATCTCGTTACAATAATATTGGTGTTGTTACCATGAAATCGTTCATCTCGTAGTTTGTTCAAGATTAATGCATTTCGGTTACCTTTTTGAATGAAGTAAATGTTAATTTGTTGGCTGAAATGCTTGGTGTAATAACAATTTCATGTGACATGCTTGGTTTTCTTTGATAGATTTCTACTTTAAGGCAGAATCCAGATATAATTGGTAGCAGTTCAAGTGACAATGAGCATCCTGAAACTGGTGAAAATTCTATGATACCTCAGCCAGATGAGCCCCTCCAACAGATAAGTACAGAATTAGTACTGGCAATTCCATGTAGTCAAATTCAACGATCTCAGAGACTAAGTGATGAAGGTTCTGGAAGGAAGAGAACGAGGGAAACTGGTTCAAGTAGCCAGAGTCAATTTCATCATCAGTTGGAATCTGGTTCAAGTAGCCAGAGTAATCATCAGTTGGAATCTGGTTCAGGTATGCTTGAGAAGAACCATCAGTTACGCATCATTATATTTTAAAGCAATTATCTTAGATCACGTTGCTCTCATTAGTCATTACTGATCATCTACGATTCTGAACGAAGGGATCTCGGGTTCATACCATTTGGAAAGCCCTTGCACAAGTAATTATTCTTCAAGCTTGCCAACAAATAACATGGATGAGTAAGAATTTGTGAATCTCAATTTACATTTAAGGCCTTATTTTTTTTACTCTTAAAACATCTAGTATTTGCTAACACTCTGGTGAATTGGGCTTGAGAAGGGGTTTTAAGGTTAAGGAGGCATTAAGAAGTCAGTTGGAGGTGCAGACTAAACTACATTTGCAGGTTGAGGTATGGAAATTCCCTTGGCTGAGTGCATGTAACATTAAGGCTTCACTCTTAAATCTTAATCCCTTAAAAATATTTATTTGAATGTATTGGGACTTGGCTTAACTTATCCGAACTTAATTTTCCTCAAAACTCCTCAAAACTTAATTTCATTAAAGTGAAAAGAACAAACCTTTGTATTGTTGATTTTGTGGTCTATCACTCATTGTTTTCTGCTAGAAGTTGAAGGCAATTGATCAGTTTGTTTATTTCTTTACTTATTGTAGGCTGAGAAGCACTTACAGCTATGCCAGGATGCAGAACGAAGATACATGGCGGCGATGATTGAAAGAGCTTGTAAGATACTGTTGATCGATAGTTATCCATGTCTATTTTCATTTTCTTGTATGCTTCTGGCGCTGTTTAGATTTTAAAATCATGATACAACATCCTGACATTGTTTACATTGCATCCTTACGCGGGAACTTTGGTTTGGGAACTAGAATGAAGTTATCGAGTAACAATTGAGGCTGTAACCTGCATACCTTCAGTTTAATGCTTACCTTATTGAAAGAGCTTGTAAGACACGTTAATTCCCTGCATACCTTATTGCTTAAACATTTTAAAAATGATTAAGAAGTAAAACATTTTAAAAATGAATTTACAAGTCTACGCTTGACACGGTGGTAGCAAAAAGTTCATACTTGTCTCTAAGAGAATATGCACATTTGGATAATCATCAGTTTGTTCCCTGCATACCATTGCTTAATGCTTAATGTTTATGATGATGTCAAATCTGTCATGAATCTTATGGTATGGGGAATTGACAGGTAGACAACTGCAGCAAGCCCCCCCACATGGATTCAACCTTTCTCCATCTGCACCTGCTTCATTTCAGTACGGTCATGTTTCATGCCAAGGCCAGGTATGGTGATGCAACTTATCTTTTACGATGAAACTGTTATGAAAATCGGGAGTTTTGATTCAATTAGGCAGGGGAAATGATTTTTTGAATCCAAATATGCAAATTCAGAACAATTGGACAATTTGGGTACATCAAAAGGCCCTCGATATTTTTCATTGCTGCATTTTTGTCACAAATAAGTCGTGTTAAGATACTGCATTATTGATCAGAGTGACATACTGCTGATGATTGATCACTGTCAGGCACTAGCAATATGAATTGCCATGCATGCTGTTTCTTCCTATCTGTCTATCTGTTAAGGAGGTCTATATCAAACTAGGTAACAATTGAGAAAAACTTAGGTACTACTTATTAGTTAATTAACCTGATTATAATCTCCAATGCATCCCTGATGCACAACTGTAATGCAGTTTAATTATACAATGTTTGTAAATATTGCCTTTAAGTTTGTGCATCAATTTACCTTGTTGCTGGTTGCTGGTTGCATACAACAACAACAACAACAACAACAACAACAACAACAACAACAAAGCCTTAGTCCCAACAACATCGATTTACCTTGTTGCTTGTTGCTGGTTGCATAACATAAAATTAATGAGGAAATTAGCCATTTGAATTAATGTGGAATAACGAACCAGGCATAAAACAATATTACAGTATCACATTTTTTACAGTATTATACATCTTGCTCTAACAATCACTTAAATGCTAACGATGGCTACTCTGATTCAGTGTATGTCTGCAGATCACAGTGTAGTACCAGCAAAATATAAAAAAGATGGAATAAAACTGAAGTAGGTGTTTTATGTAGCCAACCAAAATTATGACCCAAGAGAGCGCACGTAAAAATATATTATTGGCTGGACTAAACTCCCTTCAGTACTACTTATAAAGATAGTATTGGCTGTGAACATGAATGAAGAATGCCTGATATATACTATATCATTAGTAGAGATCCATTGTCATTAGGGTACTTAGTGAACTTTATTTTCATGGTTTTAATAGTCGTTTAAATTAATGAATCAGATGACTGTTCTCAGTGAGGAAAAGACTTTGAAATTATAGAAACTAATCATATTTTTACAGGATGCGTACTCGGATACGACCTCAGACGAGTCATATACCAACTTCACTTACATACCTGTTGATGCGGTCGATGAAGATGTGGTTGATGAGGATGAGGTCGAGGAGGATGATGTGGTCAATGAGGATGTGGTTGATGAGGATGAGGTCGAGGAGGATGAGCCCGCCGAGGAGGGAGGTGGGGGATGGAAAGTTTGCTGTTGTTATATTTTCGCCTCTGCGTTTTTTGTTTTAGTTTATGCTTGGATTAAACTCTCCATGATGAGTCAGTAAACAGTGTTTTGTATGTACTTTGTGACAGAAAATAAAACCATAATTGTTGATTTGTTGATATCAATTATGTACCCTAGAG

mRNA sequence

AAAATGGTATAACTATGGATTCCGGCCGTGTATGCTTGATGGGTGACCAAAATTTCCATCGTTGCCCATTCATGTGTTGGTCATGTGACCCTTAAACAAAGCCATCTCCCTCGATTTTGCTCGCTCAATTTCCCAACCTTCACTTACTTTACTTTGTTTCTCTCCCTTCTGTTCTCGATTCTCCTAAAAAAAAAAATACAAAAATCCAATTCTCAAATTAATTGATAATTTCCTCTTAGCTTTCAAATTGTCACCGAAATCGAAGGCTTGGAAGCTCCACTGTTGACTCACTCATTTTAGCAAAGTTGTTGTTTGGGTTTCTAGCAATAAAGATAGAAGTTCAATAATTTGTTGCAAAATCGTGAAATTAGTCTAGAGTTTTGCTATGTAACCTATGCAAGAGAATGAAGGTGCAGATTTTTTTGTTTGCATGTTTAATTAGTTAAAAAAGAGGTAGTACTGTTTTTCTGGGTTTGAAGATAAAAAAGGAACTGGGATTTCTGGGTTTTTTTTGGTTTTGTCGGGTTGGGAATACGTGACATGTGAGTTGTTGATTACATATGGGATTGAACTCACTGAAAATTATGTGTTTGTGGGTTTGAGTTTTGATAATGTCATGGGAAAATGTAAGGTATTTTGGGGTGCACAGAAGGTGTTTGATGAAATGTTTGGGAGAAATGTTGTTTCTTGGACTTGTATCCCGTGTATGCTTGATGGGTATGTTTATTGTGAGGACTTGATTAGTGGCGAAAGGGAGTTGGATGCAATGCCGAAGAGAAATCAGGTCTCATGGAATGCCATGATATTGAAGCAGAAGACAGAGATGAAGCAGAGAGCTCAAAGAGGAAGAAGGGAAAATCAAAGGAGAAAGGAAGGAAGCAAAGGAGGGAAAACTAAAAAAACAAGGAAAAATCTTGTATAAAATGGACATGTTGATTGACATATTAGTCAATTCCAACTCGATACGACGACACGGCCTGAACCATCTCTACAGAGAAGTATCTGGGAAAGAAAGGGGAGCTTAAATAATAATTGCTGACGTGGTATAACCGTCAGGAAAATACTGTTGCGAGAATTGAAGCCCATTTATGTTTTGGCGCTCAAAAACACAATTCAACTCTTTCCCCTGTTACTCTTCTCTGATCAAACCCAAACACTAAAACATTCAAGAACAAATTCTCTCTCCTCCCCCTGTAACTCAACTCTGATTAAACCCAAACGCTAAAATCTTTCAAGATTGTAATCGCCATGGATAACGGGAAGGGCAAGAACAAAGTAGATGAATACGATCAAGAACAGAATTATGAAGATGAATCTGGCATTTCTACTTTAAGGCAGAATCCAGATATAATTGGTAGCAGTTCAAGTGACAATGAGCATCCTGAAACTGGTGAAAATTCTATGATACCTCAGCCAGATGAGCCCCTCCAACAGATAAGTACAGAATTAGTACTGGCAATTCCATGTAGTCAAATTCAACGATCTCAGAGACTAAGTGATGAAGGTTCTGGAAGGAAGAGAACGAGGGAAACTGGTTCAAGTAGCCAGAGTCAATTTCATCATCAGTTGGAATCTGGTTCAAGTAGCCAGAGTAATCATCAGTTGGAATCTGGTTCAGGGATCTCGGGTTCATACCATTTGGAAAGCCCTTGCACAAGTAATTATTCTTCAAGCTTGCCAACAAATAACATGGATGAGGGTTTTAAGGTTAAGGAGGCATTAAGAAGTCAGTTGGAGGTGCAGACTAAACTACATTTGCAGGTTGAGGCTGAGAAGCACTTACAGCTATGCCAGGATGCAGAACGAAGATACATGGCGGCGATGATTGAAAGAGCTTGTAGACAACTGCAGCAAGCCCCCCCACATGGATTCAACCTTTCTCCATCTGCACCTGCTTCATTTCAGTACGGTCATGTTTCATGCCAAGGCCAGGATGCGTACTCGGATACGACCTCAGACGAGTCATATACCAACTTCACTTACATACCTGTTGATGCGGTCGATGAAGATGTGGTTGATGAGGATGAGGTCGAGGAGGATGATGTGGTCAATGAGGATGTGGTTGATGAGGATGAGGTCGAGGAGGATGAGCCCGCCGAGGAGGGAGGTGGGGGATGGAAAGTTTGCTGTTGTTATATTTTCGCCTCTGCGTTTTTTGTTTTAGTTTATGCTTGGATTAAACTCTCCATGATGAGTCAGTAAACAGTGTTTTGTATGTACTTTGTGACAGAAAATAAAACCATAATTGTTGATTTGTTGATATCAATTATGTACCCTAGAG

Coding sequence (CDS)

ATGGATAACGGGAAGGGCAAGAACAAAGTAGATGAATACGATCAAGAACAGAATTATGAAGATGAATCTGGCATTTCTACTTTAAGGCAGAATCCAGATATAATTGGTAGCAGTTCAAGTGACAATGAGCATCCTGAAACTGGTGAAAATTCTATGATACCTCAGCCAGATGAGCCCCTCCAACAGATAAGTACAGAATTAGTACTGGCAATTCCATGTAGTCAAATTCAACGATCTCAGAGACTAAGTGATGAAGGTTCTGGAAGGAAGAGAACGAGGGAAACTGGTTCAAGTAGCCAGAGTCAATTTCATCATCAGTTGGAATCTGGTTCAAGTAGCCAGAGTAATCATCAGTTGGAATCTGGTTCAGGGATCTCGGGTTCATACCATTTGGAAAGCCCTTGCACAAGTAATTATTCTTCAAGCTTGCCAACAAATAACATGGATGAGGGTTTTAAGGTTAAGGAGGCATTAAGAAGTCAGTTGGAGGTGCAGACTAAACTACATTTGCAGGTTGAGGCTGAGAAGCACTTACAGCTATGCCAGGATGCAGAACGAAGATACATGGCGGCGATGATTGAAAGAGCTTGTAGACAACTGCAGCAAGCCCCCCCACATGGATTCAACCTTTCTCCATCTGCACCTGCTTCATTTCAGTACGGTCATGTTTCATGCCAAGGCCAGGATGCGTACTCGGATACGACCTCAGACGAGTCATATACCAACTTCACTTACATACCTGTTGATGCGGTCGATGAAGATGTGGTTGATGAGGATGAGGTCGAGGAGGATGATGTGGTCAATGAGGATGTGGTTGATGAGGATGAGGTCGAGGAGGATGAGCCCGCCGAGGAGGGAGGTGGGGGATGGAAAGTTTGCTGTTGTTATATTTTCGCCTCTGCGTTTTTTGTTTTAGTTTATGCTTGGATTAAACTCTCCATGATGAGTCAGTAA

Protein sequence

MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPLQQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQSNHQLESGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQVEAEKHLQLCQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESYTNFTYIPVDAVDEDVVDEDEVEEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIFASAFFVLVYAWIKLSMMSQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23536Spo23536gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23536.1Spo23536.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23536.1.exon.1Spo23536.1.exon.1exon
Spo23536.1.exon.2Spo23536.1.exon.2exon
Spo23536.1.exon.3Spo23536.1.exon.3exon
Spo23536.1.exon.4Spo23536.1.exon.4exon
Spo23536.1.exon.5Spo23536.1.exon.5exon
Spo23536.1.exon.6Spo23536.1.exon.6exon
Spo23536.1.exon.7Spo23536.1.exon.7exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23536.1.utr5p.1Spo23536.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23536.1.CDS.1Spo23536.1.CDS.1CDS
Spo23536.1.CDS.2Spo23536.1.CDS.2CDS
Spo23536.1.CDS.3Spo23536.1.CDS.3CDS
Spo23536.1.CDS.4Spo23536.1.CDS.4CDS
Spo23536.1.CDS.5Spo23536.1.CDS.5CDS
Spo23536.1.CDS.6Spo23536.1.CDS.6CDS
Spo23536.1.CDS.7Spo23536.1.CDS.7CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23536.1.utr3p.1Spo23536.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo23536.1 vs. NCBI nr
Match: gi|902186708|gb|KNA10768.1| (hypothetical protein SOVF_141220 [Spinacia oleracea])

HSP 1 Score: 592.4 bits (1526), Expect = 4.600e-166
Identity = 311/317 (98.11%), Postives = 313/317 (98.74%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60

Query: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQSNHQLE 120
           QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQ HHQLE+GSSSQSNHQLE
Sbjct: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQIHHQLETGSSSQSNHQLE 120

Query: 121 SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQVEAEKHLQL 180
           SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQ EAEKHLQL
Sbjct: 121 SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQAEAEKHLQL 180

Query: 181 CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY 240
           CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY
Sbjct: 181 CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY 240

Query: 241 TNFTYIPVDAVDEDVVDEDEVEEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIFAS 300
           TNFTYIPVDAVDEDVVDEDE+EEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIF S
Sbjct: 241 TNFTYIPVDAVDEDVVDEDEIEEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIFVS 300

Query: 301 AFFVLVYAWIKLSMMSQ 318
           AFFVLVYAWI LSMMSQ
Sbjct: 301 AFFVLVYAWIILSMMSQ 317
[Close]
BLAST of Spo23536.1 vs. NCBI nr
Match: gi|902235858|gb|KNA24111.1| (hypothetical protein SOVF_018830 [Spinacia oleracea])

HSP 1 Score: 266.2 bits (679), Expect = 7.500e-68
Identity = 169/259 (65.25%), Postives = 182/259 (70.27%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYEDE GI TLRQNPDIIGSSSS NE PE+GE S+I +PDEPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDEYGICTLRQNPDIIGSSSSYNELPESGEKSVIAEPDEPL 60

Query: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQSNHQLE 120
           +QIST+LVLA PC QIQRSQRLSDEGSGRKR RETGSS QSQFH            HQLE
Sbjct: 61  RQISTDLVLAAPCCQIQRSQRLSDEGSGRKRMRETGSSGQSQFH------------HQLE 120

Query: 121 SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQVEAEKHLQL 180
           SGSG+SGSYHLESP TSN SSSLP +NMDE           L+VQTKLHLQVEAEKHLQL
Sbjct: 121 SGSGVSGSYHLESPGTSNSSSSLPISNMDE-----------LQVQTKLHLQVEAEKHLQL 180

Query: 181 CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY 240
            QDAERRYMA M+ER C   QQA   G NL P AP             D  S+T S   Y
Sbjct: 181 RQDAERRYMAVMLERVC---QQATQPGDNLIPPAPQ---------LTTDFPSETYSPYLY 224

Query: 241 TN----FTYIPVDAVDEDV 256
           TN       + V  V+ED+
Sbjct: 241 TNNCAWHKQLNVREVEEDI 224
[Close]
BLAST of Spo23536.1 vs. NCBI nr
Match: gi|902183862|gb|KNA10191.1| (hypothetical protein SOVF_146730 [Spinacia oleracea])

HSP 1 Score: 188.0 bits (476), Expect = 2.600e-44
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDN KGKN+VDEYDQEQ+ EDESGI  LRQNPDIIG+SSSDNE PETGENSMIPQPDEPL
Sbjct: 1   MDNRKGKNEVDEYDQEQHNEDESGICNLRQNPDIIGNSSSDNELPETGENSMIPQPDEPL 60

Query: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGS 112
           +QIST+LVLA+PCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGS
Sbjct: 61  RQISTDLVLAVPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGS 111
[Close]
BLAST of Spo23536.1 vs. NCBI nr
Match: gi|902183243|gb|KNA10085.1| (hypothetical protein SOVF_147700 isoform B, partial [Spinacia oleracea])

HSP 1 Score: 147.1 bits (370), Expect = 5.100e-32
Identity = 113/240 (47.08%), Postives = 145/240 (60.42%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYED+  I TL+QNPDIIGSSSSDNE PETGE SMI QP+EPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDDFDICTLKQNPDIIGSSSSDNELPETGEKSMIAQPNEPL 60

Query: 61  QQISTELVLAIPCS------QIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQ 120
           +QIS +   A+PCS      QI+RSQRL+ E SGR+R RETGSSSQ QFHHQLESGS  Q
Sbjct: 61  RQISRD--FAVPCSPRDRRIQIRRSQRLTREVSGRQRMRETGSSSQGQFHHQLESGSGQQ 120

Query: 121 SNHQLESGSGISGSYHLESPCTSNYSSSLPTNNMDEGF-----------------KVKEA 180
           +    ++    +     + P +  YS  L  NN    +                 +V E 
Sbjct: 121 ATQPGDNLIPPAPQLTTDFP-SETYSPYLYANNCAWHYQKLRNKYVWDRLNSLDKRVSEQ 180

Query: 181 LRSQ---LEVQTKLHLQVEAEKHLQLCQDAERRYMAAMIERACRQLQQAPPH---GFNLS 212
             S+   L+++TK++   E    L+   + E RY  +M+E   + L++ P +   G NL+
Sbjct: 181 KHSKGRILKLETKMNNLNEFIDGLE-DDNTEFRYRISMLEDVLKSLERKPANDDTGCNLA 236
[Close]
BLAST of Spo23536.1 vs. NCBI nr
Match: gi|902183242|gb|KNA10084.1| (hypothetical protein SOVF_147700 isoform A, partial [Spinacia oleracea])

HSP 1 Score: 133.3 bits (334), Expect = 7.600e-28
Identity = 109/240 (45.42%), Postives = 140/240 (58.33%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYED+        NPDIIGSSSSDNE PETGE SMI QP+EPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDDF------DNPDIIGSSSSDNELPETGEKSMIAQPNEPL 60

Query: 61  QQISTELVLAIPCS------QIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQ 120
           +QIS +   A+PCS      QI+RSQRL+ E SGR+R RETGSSSQ QFHHQLESGS  Q
Sbjct: 61  RQISRD--FAVPCSPRDRRIQIRRSQRLTREVSGRQRMRETGSSSQGQFHHQLESGSGQQ 120

Query: 121 SNHQLESGSGISGSYHLESPCTSNYSSSLPTNNMDEGF-----------------KVKEA 180
           +    ++    +     + P +  YS  L  NN    +                 +V E 
Sbjct: 121 ATQPGDNLIPPAPQLTTDFP-SETYSPYLYANNCAWHYQKLRNKYVWDRLNSLDKRVSEQ 180

Query: 181 LRSQ---LEVQTKLHLQVEAEKHLQLCQDAERRYMAAMIERACRQLQQAPPH---GFNLS 212
             S+   L+++TK++   E    L+   + E RY  +M+E   + L++ P +   G NL+
Sbjct: 181 KHSKGRILKLETKMNNLNEFIDGLE-DDNTEFRYRISMLEDVLKSLERKPANDDTGCNLA 230
[Close]
BLAST of Spo23536.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVN3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_141220 PE=4 SV=1)

HSP 1 Score: 592.4 bits (1526), Expect = 3.200e-166
Identity = 311/317 (98.11%), Postives = 313/317 (98.74%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60

Query: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQSNHQLE 120
           QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQ HHQLE+GSSSQSNHQLE
Sbjct: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQIHHQLETGSSSQSNHQLE 120

Query: 121 SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQVEAEKHLQL 180
           SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQ EAEKHLQL
Sbjct: 121 SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQAEAEKHLQL 180

Query: 181 CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY 240
           CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY
Sbjct: 181 CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY 240

Query: 241 TNFTYIPVDAVDEDVVDEDEVEEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIFAS 300
           TNFTYIPVDAVDEDVVDEDE+EEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIF S
Sbjct: 241 TNFTYIPVDAVDEDVVDEDEIEEDDVVNEDVVDEDEVEEDEPAEEGGGGWKVCCCYIFVS 300

Query: 301 AFFVLVYAWIKLSMMSQ 318
           AFFVLVYAWI LSMMSQ
Sbjct: 301 AFFVLVYAWIILSMMSQ 317
[Close]
BLAST of Spo23536.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RX98_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018830 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 5.300e-68
Identity = 169/259 (65.25%), Postives = 182/259 (70.27%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYEDE GI TLRQNPDIIGSSSS NE PE+GE S+I +PDEPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDEYGICTLRQNPDIIGSSSSYNELPESGEKSVIAEPDEPL 60

Query: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQSNHQLE 120
           +QIST+LVLA PC QIQRSQRLSDEGSGRKR RETGSS QSQFH            HQLE
Sbjct: 61  RQISTDLVLAAPCCQIQRSQRLSDEGSGRKRMRETGSSGQSQFH------------HQLE 120

Query: 121 SGSGISGSYHLESPCTSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQVEAEKHLQL 180
           SGSG+SGSYHLESP TSN SSSLP +NMDE           L+VQTKLHLQVEAEKHLQL
Sbjct: 121 SGSGVSGSYHLESPGTSNSSSSLPISNMDE-----------LQVQTKLHLQVEAEKHLQL 180

Query: 181 CQDAERRYMAAMIERACRQLQQAPPHGFNLSPSAPASFQYGHVSCQGQDAYSDTTSDESY 240
            QDAERRYMA M+ER C   QQA   G NL P AP             D  S+T S   Y
Sbjct: 181 RQDAERRYMAVMLERVC---QQATQPGDNLIPPAPQ---------LTTDFPSETYSPYLY 224

Query: 241 TN----FTYIPVDAVDEDV 256
           TN       + V  V+ED+
Sbjct: 241 TNNCAWHKQLNVREVEEDI 224
[Close]
BLAST of Spo23536.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUM9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_146730 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.800e-44
Identity = 100/111 (90.09%), Postives = 106/111 (95.50%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDN KGKN+VDEYDQEQ+ EDESGI  LRQNPDIIG+SSSDNE PETGENSMIPQPDEPL
Sbjct: 1   MDNRKGKNEVDEYDQEQHNEDESGICNLRQNPDIIGNSSSDNELPETGENSMIPQPDEPL 60

Query: 61  QQISTELVLAIPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGS 112
           +QIST+LVLA+PCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGS
Sbjct: 61  RQISTDLVLAVPCSQIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGS 111
[Close]
BLAST of Spo23536.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QS59_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_147700 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.600e-32
Identity = 113/240 (47.08%), Postives = 145/240 (60.42%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYED+  I TL+QNPDIIGSSSSDNE PETGE SMI QP+EPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDDFDICTLKQNPDIIGSSSSDNELPETGEKSMIAQPNEPL 60

Query: 61  QQISTELVLAIPCS------QIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQ 120
           +QIS +   A+PCS      QI+RSQRL+ E SGR+R RETGSSSQ QFHHQLESGS  Q
Sbjct: 61  RQISRD--FAVPCSPRDRRIQIRRSQRLTREVSGRQRMRETGSSSQGQFHHQLESGSGQQ 120

Query: 121 SNHQLESGSGISGSYHLESPCTSNYSSSLPTNNMDEGF-----------------KVKEA 180
           +    ++    +     + P +  YS  L  NN    +                 +V E 
Sbjct: 121 ATQPGDNLIPPAPQLTTDFP-SETYSPYLYANNCAWHYQKLRNKYVWDRLNSLDKRVSEQ 180

Query: 181 LRSQ---LEVQTKLHLQVEAEKHLQLCQDAERRYMAAMIERACRQLQQAPPH---GFNLS 212
             S+   L+++TK++   E    L+   + E RY  +M+E   + L++ P +   G NL+
Sbjct: 181 KHSKGRILKLETKMNNLNEFIDGLE-DDNTEFRYRISMLEDVLKSLERKPANDDTGCNLA 236
[Close]
BLAST of Spo23536.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QS39_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_147700 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 5.300e-28
Identity = 109/240 (45.42%), Postives = 140/240 (58.33%), Query Frame = 1 

		  

Query: 1   MDNGKGKNKVDEYDQEQNYEDESGISTLRQNPDIIGSSSSDNEHPETGENSMIPQPDEPL 60
           MDNGKGKNKVDEYDQEQNYED+        NPDIIGSSSSDNE PETGE SMI QP+EPL
Sbjct: 1   MDNGKGKNKVDEYDQEQNYEDDF------DNPDIIGSSSSDNELPETGEKSMIAQPNEPL 60

Query: 61  QQISTELVLAIPCS------QIQRSQRLSDEGSGRKRTRETGSSSQSQFHHQLESGSSSQ 120
           +QIS +   A+PCS      QI+RSQRL+ E SGR+R RETGSSSQ QFHHQLESGS  Q
Sbjct: 61  RQISRD--FAVPCSPRDRRIQIRRSQRLTREVSGRQRMRETGSSSQGQFHHQLESGSGQQ 120

Query: 121 SNHQLESGSGISGSYHLESPCTSNYSSSLPTNNMDEGF-----------------KVKEA 180
           +    ++    +     + P +  YS  L  NN    +                 +V E 
Sbjct: 121 ATQPGDNLIPPAPQLTTDFP-SETYSPYLYANNCAWHYQKLRNKYVWDRLNSLDKRVSEQ 180

Query: 181 LRSQ---LEVQTKLHLQVEAEKHLQLCQDAERRYMAAMIERACRQLQQAPPH---GFNLS 212
             S+   L+++TK++   E    L+   + E RY  +M+E   + L++ P +   G NL+
Sbjct: 181 KHSKGRILKLETKMNNLNEFIDGLE-DDNTEFRYRISMLEDVLKSLERKPANDDTGCNLA 230
[Close]
BLAST of Spo23536.1 vs. ExPASy Swiss-Prot
Match: PHL3_ARATH (Protein PHR1-LIKE 3 OS=Arabidopsis thaliana GN=PHL3 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.300e-6
Identity = 25/67 (37.31%), Postives = 47/67 (70.15%), Query Frame = 1 

		  

Query: 136 TSNYSSSLPTNNMDEGFKVKEALRSQLEVQTKLHLQVEAEKHLQLCQDAERRYMAAMIER 195
           +S  S  L     +E ++V EALR+Q+EVQ +LH Q+E ++ LQL  +A+ +Y+ +++E+
Sbjct: 118 SSTSSLRLAAQEQNESYQVTEALRAQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEK 177

Query: 196 ACRQLQQ 203
           AC+ +++
Sbjct: 178 ACKAIEE 184
The following BLAST results are available for this feature:
BLAST of Spo23536.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902186708|gb|KNA10768.1|4.6e-16698.1hypothetical protein SOVF_1412... [more]
gi|902235858|gb|KNA24111.1|7.5e-6865.2hypothetical protein SOVF_0188... [more]
gi|902183862|gb|KNA10191.1|2.6e-4490.0hypothetical protein SOVF_1467... [more]
gi|902183243|gb|KNA10085.1|5.1e-3247.0hypothetical protein SOVF_1477... [more]
gi|902183242|gb|KNA10084.1|7.6e-2845.4hypothetical protein SOVF_1477... [more]
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BLAST of Spo23536.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QVN3_SPIOL3.2e-16698.1Uncharacterized protein OS=Spi... [more]
A0A0K9RX98_SPIOL5.3e-6865.2Uncharacterized protein OS=Spi... [more]
A0A0K9QUM9_SPIOL1.8e-4490.0Uncharacterized protein OS=Spi... [more]
A0A0K9QS59_SPIOL3.6e-3247.0Uncharacterized protein (Fragm... [more]
A0A0K9QS39_SPIOL5.3e-2845.4Uncharacterized protein (Fragm... [more]
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BLAST of Spo23536.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PHL3_ARATH6.3e-637.3Protein PHR1-LIKE 3 OS=Arabido... [more]
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BLAST of Spo23536.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025756MYB-CC type transcription factor, LHEQLE-containing domainPFAMPF14379Myb_CC_LHEQLEcoord: 153..198
score: 6.5
NoneNo IPR availablePANTHERPTHR31499FAMILY NOT NAMEDcoord: 111..200
score: 1.3
NoneNo IPR availablePANTHERPTHR31499:SF9MYB FAMILY TRANSCRIPTION FACTORcoord: 111..200
score: 1.3

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0000785 chromatin
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding