Spo23605.1 (mRNA) | SpinachBase

Overview


Name	Spo23605.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S13
Location	chr2 : 51314295 .. 51323660 (-)
Sequence length	682

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACATCAACACTTTCTCTCTCTTCCAAAGGGTCACAAACAGATAAGGAAGTCGGGAAGATAACCCATTTTTGAGCTTCATCTTCTTCCTCTCGCTTACTCGCGCTCTTTCTCGCTCCTTCGAAAATGGCGCACACTCTAGCGACGCCAGTGGCACCATCAGTGTCGCTGATATGCAACACAAAGCTTTCTGTTTCTCTCTCCTCCTCTTCCCTATCATTCCGCCCCGTAAACCCTAAGGTTAGTTTCTTTTTGTTTGTTTGTTTGGCTAATTGATGTTCTTGTTTTTGGTTGAATTGAAATGCGGAACTAACTGATAAATTGAATGAATTGCGTAGAATGGCGGTGGGCTAAGCATAAAATGTGTGCGAGTGGGTAATGTTGAAATTCCGAACAACAAGAGGGTGGAATACTCTCTTCAATACATCCATGGAATTGGGCGTTCTAGGGCTCGTCAAATTCTCTGTGATTTGACTTTGGAAAACAAACTCACTAAGGAATTATCTGAAGATGAACTTCTCCAAGTCAGAGATGAAGTCACCAAGTACATGATTGAGGGTGACCTGGTATTTTCCTTTTTTACCCATTTTTTGTGTTGCTGAAATTTGAATTTGGGAATTTGGGCTGGTGGTTTTGTTTCAACTTAATTGTTGTTGTTGGGTGTCATAATTCTTGCAATTGGAACTCTATGGGAGATGATAAATGTAGATAGAATTGTGGATTTAATCATCCTAAATCAGGGATATTTTGATAATTATACATGGTTAGACATTAATTGACAATTAGTATTCAATATATAATTTCATCTGAATGTCCAAGAGAGTGGATAATTTGACCAGAATAATCCTACTTGTGGTGTTTAAGGATTCAGTGTTATTGAATAAATTTGAGTAATATATGGTTCTTGATTGGAGTTTGGGATTTTATACACAGAGGCGATTCAACGCTATAGCAATTAGGCGATTGAAGGAGATACAATGCTACAGAGGGGTCAGACACATTCAGGGTTTACCTTGCCGTGGACAAAGAACCAAAAACAACTGCAGGACATTGAAGAGGGGTAAAAGAGTTCAAATTGCTGGCAAGAAGAAGCCCCCTGGTCCTAAATAGTTGAAAACTGGTTTGCCTCTTTTTCTCCTCCTGTAATTCGGTGCAATTTGGGTATTCAGCTTCTCTGATTGTAGTTTATTCCGGAATGCATTGCTTGTAATTTTGTAATATTGACATCTCCTGTTGTTATGGGTTCAAAGTAAATCTACTTGTTTCTCATGCTTCTGCATCGATATGCATCTGTTTGACATTCATTCTATATTAATCGAGTCAAGTTAACAATTCCGTATGATATGCATTTCCTATGTTGTCGTTTAATTTTTACTTCATCATGGAGTAATGATGGGAAGCTGGTTAAAAAGTTCCTTTGAACCTTATTATAAAGATATCATTTTTTTTTGGCGAATGAGGGGTTGGGAAAAGGGTGATAACTGATTCCGGATGGAGGGAGCACATCTTTTAGCAATTTTAGTTGTAGTTTGTGAAAGTTCCACCAAAGCGAGATGAATGGATAAAGATGCTACCCTCCTAAAGCGAGATAAGTGCATTTGTTTAAGGTTTTTTCTCGTCACCCTTCTGCTATCTGAATTTAGCTTAGCCTTTGGTCTTTTTTCTACTGTTTCAAGGGGTTATAAGATATAAGTTATTTTTTCGGACACAACAACAAAGGAGAATTTAAGGTCTTAACACCCTTTTCTAGCTCTATTAGCAAGATTATGGGTCCTTTTAACTACATTTGTACTTACCTTTAACTATATGTCTACTTACCTTAAGACATGAGGCTAATTTCTTGATACCTTTTAATTGCTGAAAGCATGGTTTTATCTACATTTGTACTTACCTTTAACTATATGTTCATACAATCTCTTATTATTTCCTCCCTTATTATGGTCATGTAATAAACTCAGTCTACTCACTCAATTTAAGATAATGGAAGGTTGTTTTATTGATAGATAAAACTTAAAGCTCGCAAGTTAGAAGATAATGCCCGAGAACATTCGAGAGGTTCTCTAACTCTCCAACTCACCCCAATACAACCAACATGCCTACTGATTTTCTTACTCTCCTATTTAATTGCTAACATGCTAGAATAAGACAAAACTCATTAAACCAAAAGTACTATGTCATAAACTGCAACTGGGGTGCCTCCACTAAGTGGGGTGGTGCTTTCCTTTTAACCTGGTAACTGATGTGTCTGCTCCCACCTTCACCTGCAGCGCTAACTGTTTCTTCCCCTTCTTGTGTACACTCGGATTGCGGGAGGGTTCCTATGGTTCATTGCAATGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACACCTACCTTAGACCTGTAGCGCTAGTTGTTTCTTCCCCTTCTTGTGTACACTCGGATTGCGAGAGGGTCCCTATGGTTCATTGCAATAGTCCCCCCCCCCCAAAAAAAAAATATGCACTTTGTCCTCAAGGTGGAAATCCGTGAACCGCTGTGTGGTCATGGATGCCTCCACCCAAGTGGCTTCAAATGTGAGCCCCCCTTTCCACGTCAATAGTAATTATGTTCCTCTATCATTCCCTCTTCAAATTTCCAGCATTTCCCCGGGAACTGTGAGTAGCTCTAAATCCGAGCTGAGTTGCTCCAGAATATTTGGAGTCACTGTGTGCGTTTCGCTTGAGTTAGGATATGTGAAACACGAGGTGCAACTTACATGTATCAGGTAGTAGGCGTTTGTAGGCCCCTTTGCCCATACATCGAGTAATTGGGAAGGGACCATAGAACCTTGCAGCAAGCTTCTCGAAGGGCCTCTTGGCTAAGGACTTTTTTTCGTTATGGTTGCAGTTTCTAAGTAAACCATGTCCCCCACTTCGAACTCATCCTCTCTTCTTTTGCGGTCTGCATACTCTCCTTCATCCTGTGCTGGGCTTTGATAAAATTCAAATTAAGCTCATCCAACATAAAATTTTGGTCCTGCAACATCTCCTCCAACTACCCACGGCTTTGTGCTGCAGATTTATCTTCATGAGTTTAAGGGGTTTCCTTCCATACACCACCTTGAATGAGGACACTTTAGTTGAGTTGTGGGGGGTGGTATTGTAAGAAAATTCGGCCCATGGAAGCCATTTAGCCCAAGCTTTAGGCTGTCCGGAAGCAAAGCAACATAAGTATGTCTTAAGTTTCTTGTTCAGTACTTATGTTGCCGTTTGTTTGAGGATGATAGGTCGTGCTTCGCTTGAGAGTCGTGCCTTGCACTCGGAAAAGCTCCCTCCAAAATATACTCAAGAAAATTCGATCATGGTCATAAAGTATGGAGGATGGGAACCCGTATAATCTGACTACTTCCTTGACAAACACATCAACTACAATTACTGCCGCGAAGGGGTTGCGGAGGCCAATGAAATTGCCTTATTTCGACAAGCGGTCGACCACCACTAATATGGTGTCAACTCCCTTAATGGAAGTCCTATGAAGTCCATGGACACTTCATCCCATATTAGTGAAGGAACAAGCAGTAGTTGGAGTAACCCAGTTGATCCCAACTGGGAAAACTTGTTTTGTTGAACTTCACACTTCCTCACATAATCAGTCACGTCCCTCCTCATGCCGATCAACATCATTCTTGTGCTATCCTCAAATACGTCTTGACCTCCCCGCGTGCCCTCCAATTGCCGAATCATGGTACTCCGTCAACAACTCCAGAATGAAAGTTGATGTTTTCGAAATCACATACCTTTGTTTGTAAACGAGAATCTCATCAACCATCTCAAAACCACTCTCCCTTCCCCTGTATCACTCCTTGGAGTGTGTTACATCTTGCTTTACCTCTTTCTCTAAGGCTCTCCAATCCACCCCTTTAGTTGACGCAAGTGCGCCCAAAGCAATCTCACCTTCTGTTTTGCGCGACAGCGCATCGGCCACCCGGTTGGAGGAGCCCGACTTGTACTGAATTTCGAAATCGAATCCCATCAAGTTGCTCACCTATTTTTGATAATCGGCACCGATTTCTCTCTGTTGTGTGATAAACTTCAAACTTTGCTGATCACTACGCACTATAATACGTAGCCCCTAAAGATAATGCTTCCACTTCAATATGGACAAACAAACAACCATAAGTTCCTTCTCATAGACCGATTTGGTTCCCACAGACAGCTAAACGCTACTGGGGTTCCCTCTTGCATCAACACGACCCCTAGGCCATAACCCGAGGCGTCGGTCTCTACCACAAAATCTTTCTTGAAATTAGGCATTGCGAGCACAAGCGCAACACACATTGCTTTTTTAAGAGCCTCAAAAGCCTTGGTATCCTTGGTGGACCCCCCAAATGCATCTTTCTTGAGCTACACGGTTAGGGGTTGAGGGAGTTGTGCATAACGGACGATGAACTTTCTGTAGTAACCCGTCAATCCCAAGAAGCTTTGGTAGCTTCCCTTGATAATAAATATCACTCTAATTAATGATGCGAACACTTATGATTCATGAAGGAGGGGGTAAGGGTGCTAGTGAAGTTGAACCGGCTGAATAAAGAGAATTGTGGAGACTTGCAAGTTGAAGTGCCACTAATTTTACAAGAACTTCGCTCAGAATTTTGTGGGGTGTTCGAGATGGCGGAGGGGCTGCCACCACCACGTAGCCATGAACACTGGATCATTTTGAGGGGGAAACAACCTTGTTGGGGTCAAACCATAGTTACCCACAGTCTCAAAAGGATTAAATCGAACGCTTAATTAAGGAGATGTTAGTTGTCGGTATCATCAAACCCTCAACTATACCATTCTCTAGCCCAATACTTCTTGTGAAGAAAAAAGGCGGCTCTTGGTGCTTTTGTGTCAATTACCACTCCCCTTCTCCAACCGGTTCAACTCCACTAGCACCCCTATCCTTCTTTCATGAATCATGAGTGTTCCCATCATTGATCGTAGTGATACTTTTGAACGATCTAAAGAAGGGTCACCTCTCAAAGTCATGGTTTCTCCCTCCACCTGATACCCACTAGTGTTCACAACTCCCAACTTCTCGAGCCTTTGTACCCCTAGGATCAAGGCGGAGTGGCCCAAATGCAACGGTATGAAATCCTCCCGTATCACCACTCCTCCTTCAGCCCCAACTCTACCCCTTGGCATATTCCTGTTCCCTGTACGGAGTCACCGTTGCCAAGAGACACCAAAACCACCGGATTAAGGTCCCTCCACCTCGGCCACAGAGATGAATGGGTTGCCCCAGGGTCAATCATCACCACGACTTCCTGGTCGTAACTTCATCGTCTTCGGGATTAACCCTCTTAACTTCATCGTCTCGGGTCAGTAAGCCCAACCATCTTGTTTAAAGAGATGGGTGGGGCTCTCCTCCAACGACGGTGACGCCAATTCATCTGTTGCCCACTCGTCTTCATCTACCGGAATCACGCTCAACTCTTTCCTCTTGCACATGTGCCCAATTCTCCATTTATCATCACACCTAAAACAATGGCCTTTCGCCTTCTTTTCCGCCAACTCCCTCTCTGTGAGTGTTTCACCTCACCCGTACCGTGGAAAGATTTTGTTGCCGGTCGATGGAGGCGATCGCACTCGTTCCTCCTTGGAATTTCGAGGTTAGGTGGTGTGACTTCCAATAGACAAGTTCTACCGTTGTGAACCTAACCTGCTATTATAGATAGAAAAAGATCCGTTTCAGTTTGACTTAAAGGTGGCCCTCTCTTCTTTGGTCCATTCGCCCGAACCCGCTGCTCAATTCCGGTTGCCACATCCATGGCTTGATCTAAGTCATATGGGTTGGGCAACCTTAGTTCTACCTTACTTCTCACTCCTTAAAATCCCACCCAATTGGGTCGCTTCCATCAAAGTACGTTATCTCCAACTTCCAACATTTCCACTTCCGACCACCTTCAAACCCGTCGTTCTCCCTGACCTCCGATTTCGTCGTGCCTTCATCCTCACCCTCTGGTGGTGTCCTCCCTTCCATCCACTTTCTCATTTCATCTTGGAATTATTGTTGTTGCATCTTGATCTCTGCTATGTGCCATGTTTGCTCTTGGATGGTGTGCTTCAGCCCACCCATCTTTTGAGCTACTGCTTCAGCTACTATGCGCCCAATGATCTCTGCGAAACCTTCTAACGAACCGAGACGATCCCTTAGTTCTCCGATAGCCTGCTCAGCTCCGTCCAAACGTTGGGTGTTAGAGGCCGGATGCCAAGTTTGTAATGAACTCAGTCTACTCACTCAATTTAGGATAATGGAAGACTGCTATATTGATAGATAAAGCTTAAAGCTTGCAAATTACAAGATAAAGCCTGAGAACATTCGAGAGAACTCTCTAACTCTCCAACTTAGCCCAATACAACCAACATGCCTACTGATTTTCTTCCTCTTCTATTTAATTGCTAACATGCTAAATAAGTCAAAACTCGTTAAACCAAAAGTACTAGGACAGAAAGTGCCTCCACTAAGTGGGATGGTGCCTTCCTTCTGACCTGGTAGCTGATGTGTCTGCTCCCACCTTGTCCTGCAGTGCTGGCTGTTTCTTCCCCCTTCTTGTGTACACTCGGATAGCAGGAGTGTCCCTCTGGTGCATTGCAGGTCAGCGTTGAAGTTCAATCCTTTCATAATTGCACAGCGTTCTGTTTCTTAATGACGTTTTTGCAAAGATCCTCCTCCCATCATTTGATCATCTCTCTATTCAAGTAGACTACCTACTGCTGCTCTGCATTCTTTTCTTCCTTGCCTTCCTTTTTCCAAGAACCATCAACAATAATAGATATTGCTTAGGATGGATTTCTATAGTCTAATACACCTCTGTCATGCTTGTGCTAGTTGCATGACATGCAACAATTTCCTTTGCCTGCTAAATAGAAGCTTATTTGATTCAATCCAGCGTTTGTTCTTTCTTGGATTACAGTCAAGACCCATGATTGAATTGAACTTGGTTTCTTTACATAATTTCATTTCTGTGAAGCCACAAGCCCAAAGGGTTGCTGTAAACTCCACAACCCTCCCCATGCCATGTTCCAATTTCGATATAACCAGTATTAATTGCTCCCGTGCCTAACCGTCTCACTTTCCAGTTTTTTTTTTATCATCTGGTTATCTCTAAACAAGTGTTAGAAAGATTCTTGGTCTCGGCTCAAATCACATATCCTCCTTCCATGACATCTATATTTTTTTCCGGAAGAGTCTCCTTTGTAGGCATAGCTCTCCGAAACCATATTCCTGCTAATTGCAATGTCTTTCCTGCTTGCAAGAGCCAATAACCTAATTATAAGCTGCTGTGTATCCTCACTGGTGATATAAGTAACCTTCCTCTGCCGCTGGTCCATCAAATTTGTCCCAAATCATATTTGTGTTCCATGTATTTGATGGCGAAATTAATCTGCTACCAAATAGGTCTCTTCTGAAATGAAGGTTGATTATTCTCTTTGAAAGAAATTCTTCTATATTTATTGTGTATCTTTGTATTCCCTTCTGTTGCACTTTTGACTACACTTCTAGCTTCCCACCTGATATAAAGTCACATTTGTATTTATTATGGAGTACCTTTGAAGAATCTACATGCCAGTAAGTTAGGGTTAGATAAGTGCATTATTCAAGCTCGTAGATTTCTCTTTCCTAACTCTCTCTCGGACTCGAGTCTTCCTAGTACTTTCTTTCTTTTTCAATATGTAAGAGTGCAACATCGAGGGTATTTTGTTCAGACTTCAGAGCAGAGACTGGTAAGAAATATATTGGAAAGGATGTGCAATGCCATTGCTATCTTTATGCTGTTGATTAACTGGAGCTATCCTGAATATGATAAAGTGGTTTGAATATGAATATGAGCTGTCCAGATTTGATTTTTTTCGTACTTTGTTATCAACTACTATGGATGTTTTATGCTGTAAAAGTTCTTATCCAAACTGTTATACTTCGTAGTTGTACTAGTTATCACCGTTATAAGCTCTCTCCGCGGCTACTTACAACTTGCAGGCAGGCAAAATAAACTGTCAGCCGTGTAATACCAGCCTCAGAAGGAAAATGTATACGATTCCAGAGAAGCTTTCTTTAAATGAATTTGGTTATTTACCAGTGTACACAATGTAGAATTCCTCTGAAGACCGGCTTCAAAACTTAAAATGGTAAGGTTGTCTGCGAGAAGAGCTGGTATTCTTATTTCATTTTAGTCTATAGCATATTATTGATAGGAATCCAACAATGTTGTCTATACGTTGGACTTCGGAGGCCATTCGACGATAAGTAGAACGCGGTATGCGGCAAATTTTGTGTATAATCCAAATTGCGGGTGACTTGTCACCTTTGACTTGCATCTAGCAAGTAGCAAGCTTAAAGCCAGTGTCTTGAATTTCTGCATTACTACTCTTGGGAGAACATTTACTTTGGTGTGAATAAGCAGCAAAGGGAAATACAAAATACACGAGCCCTATGGGTTAACCTTCGGGCCAAGACACCATTGGTATTTTGGAACATTGAGTTGCTTAATACACGAGGATTTTCGTAGGTGAATTACGTCTTATATTTGCGCTTTGAGTATGACTGATTGTCATTTAGATAAGATTTGGTTTGGGTCTGGCTACAATGGGTATAGTTAATCGTGAAAACTAATCAATAGTCGGCATTAATTATTGTGATAACTAATCCGTAATCAGGATTAACTTTCTTTCTATTCTGTTTTCAAAAAGATAAAAATAAGAGTTTTTTGGATAAACAACAGACGGATTACGGATTAATTTTCGTAGTCGCAAACACATTGCATAGATATGCATAGAGTTGGTGACCGATTAATTCCGTCTCTGCTTGTTTCAATAATATGTAAGATAAAAGACCGATTTAATTGCTATCTAACACACACTTAGCGACTCCTAATATCTGTCGCTATGATAATTAAAGATAATGCACAGATTTAGCGATTGATGTACTTCCGTCGCTAAGAATTTTCAAAAGCTGCAAAGATTAGCGACTGTTTCTTATCGTCGCTAAGAAATTCACAAAATAGTGAAACTACCCAGATTTAGCGACTGAAGATGTCGGTCGCTAAGTTAATTATAGTTTTGCAACTTATTAGCGACCGAAGAAATTCCGTCGCTAAAAAATACAAAAATTGCCAGATTTAGCGACTGATGCTTGCGGTCGCTAAGAAATTCAAAAATTACCCAGATTAAGCGACCGACGTATTTCCGTCGCTAACTTTTTTAAAAATATGTAGGTACAGGTTTAGCGGCTGTGGATTTCCGGG

mRNA sequence

ACATCAACACTTTCTCTCTCTTCCAAAGGGTCACAAACAGATAAGGAAGTCGGGAAGATAACCCATTTTTGAGCTTCATCTTCTTCCTCTCGCTTACTCGCGCTCTTTCTCGCTCCTTCGAAAATGGCGCACACTCTAGCGACGCCAGTGGCACCATCAGTGTCGCTGATATGCAACACAAAGCTTTCTGTTTCTCTCTCCTCCTCTTCCCTATCATTCCGCCCCGTAAACCCTAAGAATGGCGGTGGGCTAAGCATAAAATGTGTGCGAGTGGGTAATGTTGAAATTCCGAACAACAAGAGGGTGGAATACTCTCTTCAATACATCCATGGAATTGGGCGTTCTAGGGCTCGTCAAATTCTCTGTGATTTGACTTTGGAAAACAAACTCACTAAGGAATTATCTGAAGATGAACTTCTCCAAGTCAGAGATGAAGTCACCAAGTACATGATTGAGGGTGACCTGAGGCGATTCAACGCTATAGCAATTAGGCGATTGAAGGAGATACAATGCTACAGAGGGGTCAGACACATTCAGGGTTTACCTTGCCGTGGACAAAGAACCAAAAACAACTGCAGGACATTGAAGAGGGGTAAAAGAGTTCAAATTGCTGGCAAGAAGAAGCCCCCTGGTCCTAAATAGTTGAAAACTGGTACAGGTTTAGCGGCTGTGGATTTCCGGG

Coding sequence (CDS)

ATGGCGCACACTCTAGCGACGCCAGTGGCACCATCAGTGTCGCTGATATGCAACACAAAGCTTTCTGTTTCTCTCTCCTCCTCTTCCCTATCATTCCGCCCCGTAAACCCTAAGAATGGCGGTGGGCTAAGCATAAAATGTGTGCGAGTGGGTAATGTTGAAATTCCGAACAACAAGAGGGTGGAATACTCTCTTCAATACATCCATGGAATTGGGCGTTCTAGGGCTCGTCAAATTCTCTGTGATTTGACTTTGGAAAACAAACTCACTAAGGAATTATCTGAAGATGAACTTCTCCAAGTCAGAGATGAAGTCACCAAGTACATGATTGAGGGTGACCTGAGGCGATTCAACGCTATAGCAATTAGGCGATTGAAGGAGATACAATGCTACAGAGGGGTCAGACACATTCAGGGTTTACCTTGCCGTGGACAAAGAACCAAAAACAACTGCAGGACATTGAAGAGGGGTAAAAGAGTTCAAATTGCTGGCAAGAAGAAGCCCCCTGGTCCTAAATAG

Protein sequence

MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23605	Spo23605	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23605.1	Spo23605.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23605.1.utr5p.1	Spo23605.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23605.1.CDS.3	Spo23605.1.CDS.3	CDS
Spo23605.1.CDS.2	Spo23605.1.CDS.2	CDS
Spo23605.1.CDS.1	Spo23605.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23605.1.utr3p.2	Spo23605.1.utr3p.2	three_prime_UTR
Spo23605.1.utr3p.1	Spo23605.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23605.1.exon.4	Spo23605.1.exon.4	exon
Spo23605.1.exon.3	Spo23605.1.exon.3	exon
Spo23605.1.exon.2	Spo23605.1.exon.2	exon
Spo23605.1.exon.1	Spo23605.1.exon.1	exon

Homology

[Close]

BLAST of Spo23605.1 vs. NCBI nr
Match: gi|902195571|gb|KNA12871.1| (hypothetical protein SOVF_121110 [Spinacia oleracea])

HSP 1 Score: 336.3 bits (861), Expect = 3.200e-89
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPVAPSVSLICNTKLSVSLSSSSL+FRPVNPKNGGGLSIKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 172

[Close]

BLAST of Spo23605.1 vs. NCBI nr
Match: gi|731310634|ref|XP_010669711.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 269.6 bits (688), Expect = 3.700e-69
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL+IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLTIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRS ARQILCDL+ ENKLTK+LSEDEL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLQYIHGIGRSTARQILCDLSFENKLTKDLSEDELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQ LPCRGQRTKNNCRTL  K+ K+VQI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQSLPCRGQRTKNNCRTLKAKKSKKVQIPGKKKAPGPK 171

[Close]

BLAST of Spo23605.1 vs. NCBI nr
Match: gi|731310636|ref|XP_010669800.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 262.3 bits (669), Expect = 5.900e-67
Identity = 137/174 (78.74%), Postives = 151/174 (86.78%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLCIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSL+YIHGIGRS ARQILCDL+ ENKLTK+LSE+EL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLKYIHGIGRSTARQILCDLSFENKLTKDLSENELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRH Q LPCRGQRTKNNCRTL  K+ K++QI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHTQSLPCRGQRTKNNCRTLKAKKSKKLQIPGKKKAPGPK 171

[Close]

BLAST of Spo23605.1 vs. NCBI nr
Match: gi|225459459|ref|XP_002285833.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera])

HSP 1 Score: 252.7 bits (644), Expect = 4.700e-64
Identity = 130/167 (77.84%), Postives = 148/167 (88.62%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATP+APS+SLICNT+  +S  S++LSF    P   GGLSIKC RVG VEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTRNPLS-PSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSR++QILCDL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GKRV IAGKKK
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKRVSIAGKKK 165

[Close]

BLAST of Spo23605.1 vs. NCBI nr
Match: gi|976920017|gb|KVI04771.1| (Ribosomal protein S13 [Cynara cardunculus var. scolymus])

HSP 1 Score: 251.9 bits (642), Expect = 8.000e-64
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATPVAPS+SLIC T  S   S +SLSF   NP   GGLSI+C RVG VEIPNNKR
Sbjct: 1   MAQALATPVAPSLSLICTTSSSFKSSPTSLSFSTFNPPKVGGLSIRCARVGGVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           V+YSLQYIHGIGR+RA +IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VQYSLQYIHGIGRTRALEILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 170
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKKAP 168

[Close]

BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R024_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_121110 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.200e-89
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPVAPSVSLICNTKLSVSLSSSSL+FRPVNPKNGGGLSIKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 172

[Close]

BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D748_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000340 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.600e-69
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL+IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLTIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRS ARQILCDL+ ENKLTK+LSEDEL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLQYIHGIGRSTARQILCDLSFENKLTKDLSEDELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQ LPCRGQRTKNNCRTL  K+ K+VQI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQSLPCRGQRTKNNCRTLKAKKSKKVQIPGKKKAPGPK 171

[Close]

BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D2N6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000330 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.100e-67
Identity = 137/174 (78.74%), Postives = 151/174 (86.78%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLCIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSL+YIHGIGRS ARQILCDL+ ENKLTK+LSE+EL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLKYIHGIGRSTARQILCDLSFENKLTKDLSENELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRH Q LPCRGQRTKNNCRTL  K+ K++QI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHTQSLPCRGQRTKNNCRTLKAKKSKKLQIPGKKKAPGPK 171

[Close]

BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: E0CRC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03850 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.300e-64
Identity = 130/167 (77.84%), Postives = 148/167 (88.62%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATP+APS+SLICNT+  +S  S++LSF    P   GGLSIKC RVG VEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTRNPLS-PSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSR++QILCDL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GKRV IAGKKK
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKRVSIAGKKK 165

[Close]

BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A118K2Q9_CYNCS (Ribosomal protein S13 OS=Cynara cardunculus var. scolymus GN=Ccrd_016905 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.600e-64
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATPVAPS+SLIC T  S   S +SLSF   NP   GGLSI+C RVG VEIPNNKR
Sbjct: 1   MAQALATPVAPSLSLICTTSSSFKSSPTSLSFSTFNPPKVGGLSIRCARVGGVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           V+YSLQYIHGIGR+RA +IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VQYSLQYIHGIGRTRALEILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 170
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKKAP 168

[Close]

BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.200e-59
Identity = 119/167 (71.26%), Postives = 140/167 (83.83%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  +A PVA S+SLICN   S  LS ++L+    N  N   LSI+C RVG VEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           +EYSLQYIHGIGR+RARQIL DL +ENK+TK+++E+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AI+RLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKK 166

[Close]

BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 8.900e-39
Identity = 90/154 (58.44%), Postives = 111/154 (72.08%), Query Frame = 1


		  
Query: 5   LATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNG---GGLSIKCVRVGNVEIPNNKRV 64
           ++ P+A S     +  LS    SSS+SF P   K G   GGL I+C+R+G VEIPN+KRV
Sbjct: 7   VSVPIATS-----SLPLSARGRSSSVSF-PAPKKGGIGHGGLQIECIRIGGVEIPNHKRV 66

Query: 65  EYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAIA 124
           EYSLQYIHGIGRSR+RQIL DL  +NK+TK+LSE+E++ +R E          +RFN +A
Sbjct: 67  EYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVA 126

Query: 125 IRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK 156
           I RLKEI+CYRG+RH  GLP RGQRTKNNCRTLK
Sbjct: 127 IERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144

[Close]

BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.800e-30
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 1


		  
Query: 42  GLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQV 101
           GL ++ +RVGN E+PNNK ++  LQ ++GIGR ++ Q+LC L + NKL ++L+  EL+ +
Sbjct: 26  GLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDL 85

Query: 102 RDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQ 161
           R+EV ++    +LRR     I+RL E+ CYRG RH  GLPCRGQRT  N RT K+GK V 
Sbjct: 86  REEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNART-KKGKAVA 145

Query: 162 IAGKKKPP 170
           IAGKKK P
Sbjct: 146 IAGKKKAP 152

[Close]

BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.100e-25
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 1


		  
Query: 49  RVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTL-ENKLTKELSEDELLQVRDEVTK 108
           RV NVEIPN KR   SL YI GIG++ A QIL D  + ENK  + LSE+EL ++R+E  K
Sbjct: 3   RVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKK 62

Query: 109 YMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKK 167
           Y+ EGDLRR   + I+RL EI+ YRG+RH +GLP RGQ T+ N RT ++G R  IAGKK
Sbjct: 63  YVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNART-RKGPRKTIAGKK 120

[Close]

BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.100e-25
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 1


		  
Query: 49  RVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTL-ENKLTKELSEDELLQVRDEVTK 108
           R+  V IP+NKRV  SL+YI+GIG ++AR+I   L + E+K   +LSEDE++++R+ + +
Sbjct: 3   RIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDR 62

Query: 109 -YMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKK 168
            Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQRT  N RT ++GK V IAGKK
Sbjct: 63  DYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNART-RKGKAVAIAGKK 122

[Close]

BLAST of Spo23605.1 vs. TAIR (Arabidopsis)
Match: AT5G14320.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 230.7 bits (587), Expect = 6.700e-61
Identity = 119/167 (71.26%), Postives = 140/167 (83.83%), Query Frame = 1


		  
Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  +A PVA S+SLICN   S  LS ++L+    N  N   LSI+C RVG VEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           +EYSLQYIHGIGR+RARQIL DL +ENK+TK+++E+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AI+RLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKK 166

[Close]

BLAST of Spo23605.1 vs. TAIR (Arabidopsis)
Match: AT1G77750.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 131.3 bits (329), Expect = 5.500e-31
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 1


		  
Query: 42  GLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQV 101
           GL ++ +RVGN E+PNNK ++  LQ ++GIGR ++ Q+LC L + NKL ++L+  EL+ +
Sbjct: 26  GLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDL 85

Query: 102 RDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQ 161
           R+EV ++    +LRR     I+RL E+ CYRG RH  GLPCRGQRT  N RT K+GK V 
Sbjct: 86  REEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNART-KKGKAVA 145

Query: 162 IAGKKKPP 170
           IAGKKK P
Sbjct: 146 IAGKKKAP 152

The following BLAST results are available for this feature:

BLAST of Spo23605.1 vs. NCBI nr
BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
BLAST of Spo23605.1 vs. TAIR (Arabidopsis)

BLAST of Spo23605.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902195571\|gb\|KNA12871.1\|	3.2e-89	99.4	hypothetical protein SOVF_1211...	[more]
gi\|731310634\|ref\|XP_010669711.1\|	3.7e-69	81.0	PREDICTED: 30S ribosomal prote...	[more]
gi\|731310636\|ref\|XP_010669800.1\|	5.9e-67	78.7	PREDICTED: 30S ribosomal prote...	[more]
gi\|225459459\|ref\|XP_002285833.1\|	4.7e-64	77.8	PREDICTED: 30S ribosomal prote...	[more]
gi\|976920017\|gb\|KVI04771.1\|	8.0e-64	75.7	Ribosomal protein S13 [Cynara ...	[more]

BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R024_SPIOL	2.2e-89	99.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8D748_BETVU	2.6e-69	81.0	Uncharacterized protein OS=Bet...	[more]
A0A0J8D2N6_BETVU	4.1e-67	78.7	Uncharacterized protein OS=Bet...	[more]
E0CRC2_VITVI	3.3e-64	77.8	Putative uncharacterized prote...	[more]
A0A118K2Q9_CYNCS	5.6e-64	75.7	Ribosomal protein S13 OS=Cynar...	[more]

BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RR13_ARATH	1.2e-59	71.2	30S ribosomal protein S13, chl...	[more]
RR13_SPIOL	8.9e-39	58.4	30S ribosomal protein S13, chl...	[more]
RT13_ARATH	9.8e-30	51.5	Small ribosomal subunit protei...	[more]
RS13_MYCA5	1.1e-25	56.3	30S ribosomal protein S13 OS=M...	[more]
RS13_ACICJ	1.1e-25	52.8	30S ribosomal protein S13 OS=A...	[more]

BLAST of Spo23605.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G14320.1	6.7e-61	71.2	Ribosomal protein S13/S18 fami...	[more]
AT1G77750.1	5.5e-31	51.5	Ribosomal protein S13/S18 fami...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 47..165 score: 24
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 49..153 score: 5.8
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 50..156 score: 3
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 48..158 score: 2.94
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 132..145 scor
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	4.10.910.10		coord: 122..167 score: 6.9
None	No IPR available	GENE3D	1.10.8.50		coord: 47..116 score: 6.3
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 43..171 score: 4.3

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0006412	translation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0035304	regulation of protein dephosphorylation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding