Spo23713.1 (mRNA) | SpinachBase

Overview


Name	Spo23713.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Location	chr2 : 52556444 .. 52560353 (-)
Sequence length	912

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGGAAATGGTAATAACAAAAAACAACAAAAGAGGAGGAGCAAAGCAGGTGATTTTTTCATGGCAACTTTGGTAATTTGGGCACTGTCGGTGGGGTACGAAATTGTGTTCAACAACAAGAAAGAGCTTCTTCCTGTTGTTTATGGTTGCTTGTTCTTCCAAATTGCGAACTGGGTTCTTCGTTTTTGGGTTTCCAGGGAACCCCTTTTTGTCAATACTGTTGTCTCTCTCCTTCATTCCTCTTTTGCTTCTGTTTCTGGTATACCCTCTCCCTCTCTCTTTCTAATTTTGGTTGATTTTGATTTGGGTAATTTGTTGCTTTTCTGGTGTTTGTGACAATATACAATAATGTGTAGTAAGAATGTTGTGATCAAATAGTATACAATAATGTTGTGACAATATACAATAATTTGTAATTTGTTGCTTTTCTGGTGTAATGGGACTCAAGTAGCTAGGTTGTGATAAAATGGTATACAATTCACCCCAATATAGCTACTTTGACTCTTTAAGTACCGATGTAGAGTATGTTAGTGCCAATAACGCAAGTGACTTGTATTGGTACTAATAAGTAGCGTATTGTTCGTATCAATAACAAATTAATCCGTATTAGTACGAGTCACTTGCATCTATTTTAATGGAAATGTACGCACAACTGCACAAGCCACTTTTGACATAAACTTTCTTGCTAGTTTAGTTGGTAAAAGTCATGACGGGTTGTGTTATTTTATTAGGAGGGAATTTCTCTAATAGTAGTGCCTTATGTTGACATATCAAAAGAATGAGAGAAATGGTGGTGTCAATTTTAGGAACTAGGAACTGTGTGGAATGGTATAAGGTACTTATCTTAGTTTGGTAATCTTAATGAATGTGCAAATAGCCAAATGCCCATATTTCATGAGCAAAAAATTGGCAAAGAAAGGGGTTAATTTTGCATTTGTGTTAGTCTGGTACGTCTTGATTCTGGATTTGAAACGGCGAACCCACCTCTTGTTGGTGGGTATATAACAGTATGTCTGTATATGCTCCTTAGTCGTTTGTTAATCTTGATACTAAGCTTTGCATTTTAAGAGTGGTTTATTGGTGAAAGCCTGAATTCTGAAACCACTGCATATCATTTACCAGCTGTTTCTTGAGACTGCAGCTCGTGATCCCTTATCCGAATTTTTGCTTTTACATACCTAATTAGTCTTTCTGAAGTAAATTGCTTTACAATGAATCAAAGAGTTTTATGATGTAAAGTTGATGGTATAGGAGTATTAACTCTAATTGTTGGCTGACAATCGATTTTCACTTGATTAAATCCCTGCATCATATTCTATTGGTGGTTTTCAGGACATTGGCCCATTCACCCTAGGAAGAGAATTTTTGGTTTTATGCTTACATTGTCTGATCACAAAATCGAAGTTCTTTACAAAATCTGACCGAATTATACTTTCATAAGCGAAACACTTGATATAGGCTTATACATGGGGTTTGTGATCTTGAAGTATGTAATTAACAAGAACCTTAGCTCATAGTGGTTCTAGATGATTGATTATCTTGTTTAATAAACTTAAGTTGTATCTTGTTTAGGTGCACCAAATCATGTCAAGTTTAATGTTAACTGTAAGTGAGGTACTTGAGTAGATTTGGCCTGGACTCTTCATTTTATCTCAAATACCCGTGTCGGATCCGCGACACTTGGACATGGATATGGACACTTGGACACTTCATTCCAAAATCATACAATATTTTCACAAAATAGCCGTGTCGGACACTTGGACACGTACCCATGTCCGACATGGGTATCCGAGGCCGGGTAACATAGGATTTGGCTTTTTTTTCCCTTCTATCATGTCCTCCCAATATGAATTATCTACTATTTATGTGATTTGTTGCCTATCGCTTCGTGGTATCATATGATTCACATTCTTGCTTCTCCTCACTCATCCATCATTCAAAACATGCATACTTCTCCTTGCTTTGTGTATGACAAACTTGCTTGCATCTTTTGCAGTTGTGTTTATTTTGGTCAACCAATGGAGTGCAAAGCATTCCATTCAGATGTTTGATCACGAAGAACTTGTTCGCAATACTTGGCCATGGGCATACACAGCCTTATGTTTCTCTTGTGGTTATTTTGCATATGATCAGTGGGATATGTTGAAATATGAACTATATAGTGGCTGGTTCCCATCTATCCTGGCACATCACCTGATCCTTCTTCTTTGCTTCACGCTTGCTCTGTATCGGAATGTCACCATCAACTATCTCATCCTTACCCTTATCTGTGAGGTAATCTTCTATGTTCATTTTGAAGCTTTATTTCTGCTAGTCAATGGTTCTATGTCGTTTCTGAACTGCACAGGTCCTATTTCGTTACCCAATTCGAGTATTTTTCTCCATATCTTTTTTTTAGTTACTTGAGATTTACCATAATCTGCAATTTTAAATTGTCTGTAACCTCCGTTTGTAGGTCGCTTATTATTAGGAATTTAGGATGAGTTCACATCAGTTTTCCACTAACTTTTACCTACTTTTTCATTGTTCAGGCTCACATAAGACTCTCCCTATGTGTACACATTATCCCCAGACTCACCTAAACTCCTAAAAGAATATAATAAAGTAGGATAAAGTGTGATGATGTGATATGATTTGATTTGGTTAGAGGAAAAAGTGGAGTCTTAAGTGAGGCTTGAATGAGTCTTGGACTTTCAAACTCACCTCAAGATTTGTTGTAGTCTTTTGCCACATTATTCCAAGAGTCTGACAGACTCCCTTCCAGACTAGGGATAAACGCACCCTTAGTCATTATCATCATTTTATTGGAATGGCTTGCCTCTCATTATTTTGTTGCAATGCCTTGAATCTAGCGCTTCAGGTAACTCCCCACTAGCCATTATTATGTAATCCCTCAATTTTAAGTATGAACACCTTGGAGTCCTCATATCCTGATAGGATTGTTCTCCCATATGGACGGAGCTAACTTTTTGTATTGAAAGCATCTAACTTTCACCCCTTCTCTTTGTCACAATAATTAACCTTTAATGGCAATCGGTTGTTGGTTGTTGGCTGGTGGTTGTTTTACTTGGCTTGTTTGACTAGCTATTTGTGTTGGCTTTTTATGTTGGTTGTTTGATTGTGTTTGGTAAAGTTGGTTGTTGGCTCCCAGCTGTTTAATAATTAATTAGTAAATTGAAAATCCAACAACCAATGTAAAAAAAGCTACTCTTACTAGCTTTTGGATTTTGACAAAAAAAACCGACTTTTTGGCCAAGGAAAAAACCACTTATCAAACATTTATATTGGTTGTTTGACCACTCTACTGTTACTAGCTTTTGGATTTTGGCAAAAAAGACAGATTTTTAGCCAAGGAAAAAACCACTTATCAAACATTTATATTGGCTGTTTGATCAAAGAAAAAGCCAAAAGCCAATGAAAAGCCAATTACCAAACAGGCCCGATGTATGATCCAATAGAAGATATCATGAACCTTCTTATGGAAATAGCTTTAAGCCATAATAATAGACATGTTTTCTAATATCAATTTGTGTAGTTTTATGATTCTCCACTCTCTCTCGACCTAAACCATCTCATTTTAACCGTGATTAAACAGTTGCATTCAGTCTTCCTACACGTGAGGAAAGTGAGACGGATGGCAGGGATTAGGAGTGCAGAGAGTACAATCGTGAAGGCGGAATGGTTTCTAAACTGGCTCACCTTCTTCTTTGCTCGAGTACTACCACACGCGTTAATATTGATCAAACTTGTAATAGACGCCCCAAAGTTTGACAAGGGTGGTGTAGAACTCCCACTTGCTTTATTCGGGATGATTGGAATGAATTTGCTCAATATCGGTCTAGGCATCGACATTTTGGGTGCTTATAAGAGAGAAAAGAGTCCACTTAATCATCATAATGATTAA

mRNA sequence

ATGGTGAGAGGAAATGGTAATAACAAAAAACAACAAAAGAGGAGGAGCAAAGCAGGTGATTTTTTCATGGCAACTTTGGTAATTTGGGCACTGTCGGTGGGGTACGAAATTGTGTTCAACAACAAGAAAGAGCTTCTTCCTGTTGTTTATGGTTGCTTGTTCTTCCAAATTGCGAACTGGGTTCTTCGTTTTTGGGTTTCCAGGGAACCCCTTTTTGTCAATACTGTTGTCTCTCTCCTTCATTCCTCTTTTGCTTCTGTTTCTGTTGTGTTTATTTTGGTCAACCAATGGAGTGCAAAGCATTCCATTCAGATGTTTGATCACGAAGAACTTGTTCGCAATACTTGGCCATGGGCATACACAGCCTTATGTTTCTCTTGTGGTTATTTTGCATATGATCAGTGGGATATGTTGAAATATGAACTATATAGTGGCTGGTTCCCATCTATCCTGGCACATCACCTGATCCTTCTTCTTTGCTTCACGCTTGCTCTGTATCGGAATGTCACCATCAACTATCTCATCCTTACCCTTATCTGTGAGTTTTATGATTCTCCACTCTCTCTCGACCTAAACCATCTCATTTTAACCGTGATTAAACAGTTGCATTCAGTCTTCCTACACGTGAGGAAAGTGAGACGGATGGCAGGGATTAGGAGTGCAGAGAGTACAATCGTGAAGGCGGAATGGTTTCTAAACTGGCTCACCTTCTTCTTTGCTCGAGTACTACCACACGCGTTAATATTGATCAAACTTGTAATAGACGCCCCAAAGTTTGACAAGGGTGGTGTAGAACTCCCACTTGCTTTATTCGGGATGATTGGAATGAATTTGCTCAATATCGGTCTAGGCATCGACATTTTGGGTGCTTATAAGAGAGAAAAGAGTCCACTTAATCATCATAATGATTAA

Coding sequence (CDS)

ATGGTGAGAGGAAATGGTAATAACAAAAAACAACAAAAGAGGAGGAGCAAAGCAGGTGATTTTTTCATGGCAACTTTGGTAATTTGGGCACTGTCGGTGGGGTACGAAATTGTGTTCAACAACAAGAAAGAGCTTCTTCCTGTTGTTTATGGTTGCTTGTTCTTCCAAATTGCGAACTGGGTTCTTCGTTTTTGGGTTTCCAGGGAACCCCTTTTTGTCAATACTGTTGTCTCTCTCCTTCATTCCTCTTTTGCTTCTGTTTCTGTTGTGTTTATTTTGGTCAACCAATGGAGTGCAAAGCATTCCATTCAGATGTTTGATCACGAAGAACTTGTTCGCAATACTTGGCCATGGGCATACACAGCCTTATGTTTCTCTTGTGGTTATTTTGCATATGATCAGTGGGATATGTTGAAATATGAACTATATAGTGGCTGGTTCCCATCTATCCTGGCACATCACCTGATCCTTCTTCTTTGCTTCACGCTTGCTCTGTATCGGAATGTCACCATCAACTATCTCATCCTTACCCTTATCTGTGAGTTTTATGATTCTCCACTCTCTCTCGACCTAAACCATCTCATTTTAACCGTGATTAAACAGTTGCATTCAGTCTTCCTACACGTGAGGAAAGTGAGACGGATGGCAGGGATTAGGAGTGCAGAGAGTACAATCGTGAAGGCGGAATGGTTTCTAAACTGGCTCACCTTCTTCTTTGCTCGAGTACTACCACACGCGTTAATATTGATCAAACTTGTAATAGACGCCCCAAAGTTTGACAAGGGTGGTGTAGAACTCCCACTTGCTTTATTCGGGATGATTGGAATGAATTTGCTCAATATCGGTCTAGGCATCGACATTTTGGGTGCTTATAAGAGAGAAAAGAGTCCACTTAATCATCATAATGATTAA

Protein sequence

MVRGNGNNKKQQKRRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFVNTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNHLILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23713	Spo23713	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23713.1	Spo23713.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23713.1.CDS.3	Spo23713.1.CDS.3	CDS
Spo23713.1.CDS.2	Spo23713.1.CDS.2	CDS
Spo23713.1.CDS.1	Spo23713.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23713.1.exon.3	Spo23713.1.exon.3	exon
Spo23713.1.exon.2	Spo23713.1.exon.2	exon
Spo23713.1.exon.1	Spo23713.1.exon.1	exon

Homology

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BLAST of Spo23713.1 vs. NCBI nr
Match: gi|902236718|gb|KNA24516.1| (hypothetical protein SOVF_015120 [Spinacia oleracea])

HSP 1 Score: 515.0 bits (1325), Expect = 8.900e-143
Identity = 259/281 (92.17%), Postives = 260/281 (92.53%), Query Frame = 1


		  
Query: 23  MATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFVNTVVSLLHS 82
           MATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWV+RFWVSREPLFVNTVVSLLHS
Sbjct: 1   MATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVVRFWVSREPLFVNTVVSLLHS 60

Query: 83  SFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYEL 142
           SFAS SVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYEL
Sbjct: 61  SFASASVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYEL 120

Query: 143 YSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNHLILTVIKQL 202
           YSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICE                    L
Sbjct: 121 YSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICE--------------------L 180

Query: 203 HSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKG 262
           HSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKG
Sbjct: 181 HSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKG 240

Query: 263 GVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND 304
           GVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND
Sbjct: 241 GVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND 261

[Close]

BLAST of Spo23713.1 vs. NCBI nr
Match: gi|731361567|ref|XP_010692424.1| (PREDICTED: uncharacterized protein LOC104905537 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 462.6 bits (1189), Expect = 5.200e-127
Identity = 239/304 (78.62%), Postives = 261/304 (85.86%), Query Frame = 1


		  
Query: 1   MVRGNGNNKKQQKRRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANW 60
           M+RG+ NNKKQQKR SKA  FFMATLV+W +SVG+EI FNNKKELLP+++  +FFQIAN 
Sbjct: 1   MMRGS-NNKKQQKR-SKAATFFMATLVMWGMSVGFEIAFNNKKELLPLIFSFVFFQIANS 60

Query: 61  VLRFWVSREPLFVNTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAY 120
           +LR+WVSREPLFVNT VSLLHSS AS   VFIL NQW+AK SIQMF+HE+LVRNTWPWAY
Sbjct: 61  LLRYWVSREPLFVNTSVSLLHSSLASTFAVFILFNQWNAKGSIQMFEHEQLVRNTWPWAY 120

Query: 121 TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLIC 180
           TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILL+CF+LALYRNVTINYLILTLIC
Sbjct: 121 TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLVCFSLALYRNVTINYLILTLIC 180

Query: 181 EFYDSPLSLDLNHLILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFA 240
           E                   QLHSVFLHVRK+RRMAGIRSAESTIVKAEW LNW+TFFFA
Sbjct: 181 E-------------------QLHSVFLHVRKLRRMAGIRSAESTIVKAEWVLNWITFFFA 240

Query: 241 RVLPHALILIKLVIDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKS-PLN 300
           R+LPHALILIKLV DA KFDK GVELPLA+FGMIGMNLLNIGLG+DI GAYKREK+ P N
Sbjct: 241 RLLPHALILIKLVKDASKFDK-GVELPLAIFGMIGMNLLNIGLGMDIFGAYKREKNPPQN 282

Query: 301 HHND 304
           HH D
Sbjct: 301 HHKD 282

[Close]

BLAST of Spo23713.1 vs. NCBI nr
Match: gi|731361569|ref|XP_010692425.1| (PREDICTED: TLC domain-containing protein 2 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 459.9 bits (1182), Expect = 3.400e-126
Identity = 238/304 (78.29%), Postives = 260/304 (85.53%), Query Frame = 1


		  
Query: 1   MVRGNGNNKKQQKRRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANW 60
           M+RG+ NNKKQQKR SKA  FFMATLV+W +SVG+EI FNNKKELLP+++  +FFQIAN 
Sbjct: 1   MMRGS-NNKKQQKR-SKAATFFMATLVMWGMSVGFEIAFNNKKELLPLIFSFVFFQIANS 60

Query: 61  VLRFWVSREPLFVNTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAY 120
           +LR+WVSREPLFVNT VSLLHSS AS   VFIL NQW+AK SIQMF+HE+LVRNTWPWAY
Sbjct: 61  LLRYWVSREPLFVNTSVSLLHSSLASTFAVFILFNQWNAKGSIQMFEHEQLVRNTWPWAY 120

Query: 121 TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLIC 180
           TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILL+CF+LALYRNVTINYLILTLIC
Sbjct: 121 TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLVCFSLALYRNVTINYLILTLIC 180

Query: 181 EFYDSPLSLDLNHLILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFA 240
           E                    LHSVFLHVRK+RRMAGIRSAESTIVKAEW LNW+TFFFA
Sbjct: 181 E--------------------LHSVFLHVRKLRRMAGIRSAESTIVKAEWVLNWITFFFA 240

Query: 241 RVLPHALILIKLVIDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKS-PLN 300
           R+LPHALILIKLV DA KFDKG VELPLA+FGMIGMNLLNIGLG+DI GAYKREK+ P N
Sbjct: 241 RLLPHALILIKLVKDASKFDKG-VELPLAIFGMIGMNLLNIGLGMDIFGAYKREKNPPQN 281

Query: 301 HHND 304
           HH D
Sbjct: 301 HHKD 281

[Close]

BLAST of Spo23713.1 vs. NCBI nr
Match: gi|658007195|ref|XP_008338773.1| (PREDICTED: uncharacterized protein LOC103401839 [Malus domestica])

HSP 1 Score: 374.8 bits (961), Expect = 1.400e-100
Identity = 191/291 (65.64%), Postives = 217/291 (74.57%), Query Frame = 1


		  
Query: 14  RRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFV 73
           +  KAG FF+ATLV+W +SV +EI+F+ + ELL VV GC F+Q ANWV+R +VSR+PLFV
Sbjct: 10  KEDKAGPFFLATLVLWFVSVLFEILFHRRSELLAVVAGCFFYQFANWVVRSFVSRDPLFV 69

Query: 74  NTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYD 133
           NT VSLLHSS  S SVVFILVN+W    S+ MF+H ELV  TWPWAY ALCFSCGYFAYD
Sbjct: 70  NTSVSLLHSSITSASVVFILVNRWLENGSVGMFEHAELVGRTWPWAYPALCFSCGYFAYD 129

Query: 134 QWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNH 193
           QWDML+Y LYSGW PSIL HHL+LL+CFTLALYRNVTINYLILTLICE            
Sbjct: 130 QWDMLQYGLYSGWIPSILMHHLVLLICFTLALYRNVTINYLILTLICE------------ 189

Query: 194 LILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLV 253
                   LHS+FLHVRKVRRMAGIR A S IVK EW LNW+TF  AR  PH LI  KL 
Sbjct: 190 --------LHSIFLHVRKVRRMAGIRDATSKIVKVEWVLNWVTFTLARTAPHILITAKLF 249

Query: 254 IDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLN---HH 302
            DAPKF K G+ELPLALFGM GMN LN  LGID+  A+KRE++P +   HH
Sbjct: 250 CDAPKFGK-GIELPLALFGMFGMNFLNASLGIDLFHAFKRERNPQHANAHH 279

[Close]

BLAST of Spo23713.1 vs. NCBI nr
Match: gi|658051625|ref|XP_008361548.1| (PREDICTED: uncharacterized protein LOC103425239 [Malus domestica])

HSP 1 Score: 372.9 bits (956), Expect = 5.500e-100
Identity = 190/291 (65.29%), Postives = 216/291 (74.23%), Query Frame = 1


		  
Query: 14  RRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFV 73
           +  KAG FF+ATLV+W +SV +EI+F+ + ELL VV GC F+Q ANWV+R +VSR+PLFV
Sbjct: 10  KEDKAGPFFLATLVLWFVSVLFEILFHRRSELLAVVAGCFFYQFANWVVRSFVSRDPLFV 69

Query: 74  NTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYD 133
           NT VSLLHSS  S SVVF LVN+W    S+ MF+H ELV  TWPWAY ALCFSCGYFAYD
Sbjct: 70  NTSVSLLHSSITSASVVFXLVNRWLENGSVGMFEHAELVGRTWPWAYPALCFSCGYFAYD 129

Query: 134 QWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNH 193
           QWDML+Y LYSGW PSIL HHL+LL+CFTLALYRNVTINYLILTLICE            
Sbjct: 130 QWDMLQYGLYSGWIPSILMHHLVLLICFTLALYRNVTINYLILTLICE------------ 189

Query: 194 LILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLV 253
                   LHS+FLHVRKVRRMAGIR A S IVK EW LNW+TF  AR  PH LI  KL 
Sbjct: 190 --------LHSIFLHVRKVRRMAGIRDATSKIVKVEWVLNWVTFTLARTAPHILITAKLF 249

Query: 254 IDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLN---HH 302
            DAPKF K G+ELPLALFGM GMN LN  LGID+  A+KRE++P +   HH
Sbjct: 250 CDAPKFGK-GIELPLALFGMFGMNFLNASLGIDLFHAFKRERNPQHANAHH 279

[Close]

BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RYC0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015120 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 6.200e-143
Identity = 259/281 (92.17%), Postives = 260/281 (92.53%), Query Frame = 1


		  
Query: 23  MATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFVNTVVSLLHS 82
           MATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWV+RFWVSREPLFVNTVVSLLHS
Sbjct: 1   MATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVVRFWVSREPLFVNTVVSLLHS 60

Query: 83  SFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYEL 142
           SFAS SVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYEL
Sbjct: 61  SFASASVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQWDMLKYEL 120

Query: 143 YSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNHLILTVIKQL 202
           YSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICE                    L
Sbjct: 121 YSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICE--------------------L 180

Query: 203 HSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKG 262
           HSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKG
Sbjct: 181 HSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVIDAPKFDKG 240

Query: 263 GVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND 304
           GVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND
Sbjct: 241 GVELPLALFGMIGMNLLNIGLGIDILGAYKREKSPLNHHND 261

[Close]

BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJJ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g020470 PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 2.400e-126
Identity = 238/304 (78.29%), Postives = 260/304 (85.53%), Query Frame = 1


		  
Query: 1   MVRGNGNNKKQQKRRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANW 60
           M+RG+ NNKKQQKR SKA  FFMATLV+W +SVG+EI FNNKKELLP+++  +FFQIAN 
Sbjct: 1   MMRGS-NNKKQQKR-SKAATFFMATLVMWGMSVGFEIAFNNKKELLPLIFSFVFFQIANS 60

Query: 61  VLRFWVSREPLFVNTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAY 120
           +LR+WVSREPLFVNT VSLLHSS AS   VFIL NQW+AK SIQMF+HE+LVRNTWPWAY
Sbjct: 61  LLRYWVSREPLFVNTSVSLLHSSLASTFAVFILFNQWNAKGSIQMFEHEQLVRNTWPWAY 120

Query: 121 TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLIC 180
           TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILL+CF+LALYRNVTINYLILTLIC
Sbjct: 121 TALCFSCGYFAYDQWDMLKYELYSGWFPSILAHHLILLVCFSLALYRNVTINYLILTLIC 180

Query: 181 EFYDSPLSLDLNHLILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFA 240
           E                    LHSVFLHVRK+RRMAGIRSAESTIVKAEW LNW+TFFFA
Sbjct: 181 E--------------------LHSVFLHVRKLRRMAGIRSAESTIVKAEWVLNWITFFFA 240

Query: 241 RVLPHALILIKLVIDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKS-PLN 300
           R+LPHALILIKLV DA KFDKG VELPLA+FGMIGMNLLNIGLG+DI GAYKREK+ P N
Sbjct: 241 RLLPHALILIKLVKDASKFDKG-VELPLAIFGMIGMNLLNIGLGMDIFGAYKREKNPPQN 281

Query: 301 HHND 304
           HH D
Sbjct: 301 HHKD 281

[Close]

BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
Match: V4T7I8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001495mg PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 6.100e-98
Identity = 186/287 (64.81%), Postives = 218/287 (75.96%), Query Frame = 1


		  
Query: 11  QQKRRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREP 70
           +Q  ++K G FF+ATL++W++SV +EI FN +KELL +V G  FFQIANWV+R  VSR+P
Sbjct: 107 KQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDP 166

Query: 71  LFVNTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYF 130
           LFVNT VSLLHS+  SVSVVFI+VNQW       MF+H ELV + W WAY ALCFSCGYF
Sbjct: 167 LFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYF 226

Query: 131 AYDQWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLD 190
           AYDQWDML+Y LYSG  P IL HHL+LL+CFTLALYRNVTINYLILTLICE         
Sbjct: 227 AYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICE--------- 286

Query: 191 LNHLILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILI 250
                      LHS+FLHVRKVRRMAGIR ++S IV+ EW LNW+TFF AR+  H LI I
Sbjct: 287 -----------LHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITI 346

Query: 251 KLVIDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKSP 298
           KL+ DA KF+K G+ELPLALFGM GMNLLNI LGID+  A+KREK+P
Sbjct: 347 KLIRDASKFEK-GIELPLALFGMAGMNLLNISLGIDLFNAFKREKNP 372

[Close]

BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
Match: A0A067GLX8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023487mg PE=4 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 6.100e-98
Identity = 186/287 (64.81%), Postives = 218/287 (75.96%), Query Frame = 1


		  
Query: 11  QQKRRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREP 70
           +Q  ++K G FF+ATL++W++SV +EI FN +KELL +V G  FFQIANWV+R  VSR+P
Sbjct: 7   KQSDKNKVGVFFLATLLLWSVSVLFEIAFNKRKELLFIVAGACFFQIANWVIRLLVSRDP 66

Query: 71  LFVNTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYF 130
           LFVNT VSLLHS+  SVSVVFI+VNQW       MF+H ELV + W WAY ALCFSCGYF
Sbjct: 67  LFVNTSVSLLHSTITSVSVVFIVVNQWLRNGLNGMFEHSELVGSAWLWAYPALCFSCGYF 126

Query: 131 AYDQWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLD 190
           AYDQWDML+Y LYSG  P IL HHL+LL+CFTLALYRNVTINYLILTLICE         
Sbjct: 127 AYDQWDMLQYRLYSGLIPGILVHHLLLLVCFTLALYRNVTINYLILTLICE--------- 186

Query: 191 LNHLILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILI 250
                      LHS+FLHVRKVRRMAGIR ++S IV+ EW LNW+TFF AR+  H LI I
Sbjct: 187 -----------LHSIFLHVRKVRRMAGIRDSKSRIVRVEWVLNWITFFLARIASHLLITI 246

Query: 251 KLVIDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKSP 298
           KL+ DA KF+K G+ELPLALFGM GMNLLNI LGID+  A+KREK+P
Sbjct: 247 KLIRDASKFEK-GIELPLALFGMAGMNLLNISLGIDLFNAFKREKNP 272

[Close]

BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
Match: A0A059BZ38_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04350 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 1.800e-97
Identity = 184/290 (63.45%), Postives = 216/290 (74.48%), Query Frame = 1


		  
Query: 16  SKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFVNT 75
           ++AG FF+ATL++W +SV +EI FN + ELL V+ GC F+Q ANWV+R  VSR+PLFVNT
Sbjct: 12  NRAGAFFLATLILWLVSVLFEIAFNGRTELLSVLAGCCFYQAANWVVRSRVSRDPLFVNT 71

Query: 76  VVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYDQW 135
            VSLLH++  S SVVFIL+N W       +F+H  LV  TWPWAY ALCFSCGYFAYDQW
Sbjct: 72  AVSLLHATVTSSSVVFILLNLWLKDGYKDIFEHSRLVGATWPWAYRALCFSCGYFAYDQW 131

Query: 136 DMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNHLI 195
           DML+Y LYSGW PSIL HHLILL+CFTLALYRNVTINYLILTLICE              
Sbjct: 132 DMLQYRLYSGWIPSILVHHLILLICFTLALYRNVTINYLILTLICE-------------- 191

Query: 196 LTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLVID 255
                 +HS+FLH+RKVRRMAGIR A+S +VK EW LNW++FF AR+  H  I  KL+ID
Sbjct: 192 ------IHSIFLHMRKVRRMAGIRDAKSVVVKIEWVLNWVSFFVARLAAHVFITAKLIID 251

Query: 256 APKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKRE--KSPLNHHND 304
           A KFDK G+ELPLALFGM GMN+LNIGLGID+ GA+KRE   S  NH  D
Sbjct: 252 ASKFDK-GIELPLALFGMAGMNMLNIGLGIDLFGAFKREMWTSKSNHRRD 280

[Close]

BLAST of Spo23713.1 vs. TAIR (Arabidopsis)
Match: AT1G21790.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 350.9 bits (899), Expect = 7.800e-97
Identity = 177/283 (62.54%), Postives = 212/283 (74.91%), Query Frame = 1


		  
Query: 14  RRSKAGDFFMATLVIWALSVGYEIVFNNKKELLPVVYGCLFFQIANWVLRFWVSREPLFV 73
           +++ AG FF+ATL++W +SV +EI FN + ELL V+ G  FFQ+ NWV+R W+SR+P+FV
Sbjct: 12  KKNGAGQFFLATLLLWLVSVVFEIAFNLRTELLWVICGGCFFQLMNWVVRSWISRDPIFV 71

Query: 74  NTVVSLLHSSFASVSVVFILVNQWSAKHSIQMFDHEELVRNTWPWAYTALCFSCGYFAYD 133
           NT VSLLHS   S SVVFIL+NQ  AK   +MFDH ELV  TW WAY ALCFSCGYFAYD
Sbjct: 72  NTSVSLLHSIITSASVVFILLNQCLAKGLDEMFDHSELVGGTWKWAYPALCFSCGYFAYD 131

Query: 134 QWDMLKYELYSGWFPSILAHHLILLLCFTLALYRNVTINYLILTLICEFYDSPLSLDLNH 193
           QWDML+Y LYSG  PSIL HHL+LL+CFTLALYRNVTINYLILTLICE            
Sbjct: 132 QWDMLQYRLYSGLIPSILVHHLVLLVCFTLALYRNVTINYLILTLICE------------ 191

Query: 194 LILTVIKQLHSVFLHVRKVRRMAGIRSAESTIVKAEWFLNWLTFFFARVLPHALILIKLV 253
                   +HS+FLHVRK+RRMAGIR + + +VK EW LNW  F FAR +PH LI IKL+
Sbjct: 192 --------MHSIFLHVRKLRRMAGIRDSNTALVKLEWVLNWTAFVFARCIPHILITIKLI 251

Query: 254 IDAPKFDKGGVELPLALFGMIGMNLLNIGLGIDILGAYKREKS 297
            DA KF K GVELPLAL GM GMN+LN+GLG+D+  A++RE+S
Sbjct: 252 KDAHKFGK-GVELPLALSGMAGMNILNVGLGLDLFHAFRRERS 273

The following BLAST results are available for this feature:

BLAST of Spo23713.1 vs. NCBI nr
BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
BLAST of Spo23713.1 vs. ExPASy Swiss-Prot
BLAST of Spo23713.1 vs. TAIR (Arabidopsis)

BLAST of Spo23713.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902236718\|gb\|KNA24516.1\|	8.9e-143	92.1	hypothetical protein SOVF_0151...	[more]
gi\|731361567\|ref\|XP_010692424.1\|	5.2e-127	78.6	PREDICTED: uncharacterized pro...	[more]
gi\|731361569\|ref\|XP_010692425.1\|	3.4e-126	78.2	PREDICTED: TLC domain-containi...	[more]
gi\|658007195\|ref\|XP_008338773.1\|	1.4e-100	65.6	PREDICTED: uncharacterized pro...	[more]
gi\|658051625\|ref\|XP_008361548.1\|	5.5e-100	65.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23713.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RYC0_SPIOL	6.2e-143	92.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8BJJ0_BETVU	2.4e-126	78.2	Uncharacterized protein OS=Bet...	[more]
V4T7I8_9ROSI	6.1e-98	64.8	Uncharacterized protein OS=Cit...	[more]
A0A067GLX8_CITSI	6.1e-98	64.8	Uncharacterized protein OS=Cit...	[more]
A0A059BZ38_EUCGR	1.8e-97	63.4	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo23713.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo23713.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G21790.1	7.8e-97	62.5	TRAM, LAG1 and CLN8 (TLC) lipi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 72..281 score: 5.1
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 67..293 score: 1.2
IPR006634	TRAM/LAG1/CLN8 homology domain	PROFILE	PS50922	TLC	coord: 67..274 score: 10
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 18..181 score: 2.5E-89coord: 202..303 score: 2.5
None	No IPR available	PANTHER	PTHR13439:SF4	PROTEIN K12H6.6, ISOFORM B-RELATED	coord: 18..181 score: 2.5E-89coord: 202..303 score: 2.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane