Spo23844.1 (mRNA)

Overview
NameSpo23844.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 53903676 .. 53905479 (-)
Sequence length354
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTCCGTAATCTAGAGAAAGAATCAAAAGGGATATTTAAAAATAATTTATATGGTTGAGAAAGTATTTCTTGATGATGCTCTAGTTTAAAAATCACAGAACATAGTGAGATTGCAACAGTATGTTTCCCTTTTCAATTTCTCCTCAATCCCTCAAATCCATTTCACAGTTTTCCAGATTGTTAGATTGGATTTCACTCTGCATTTTTCTCTTTCCGTACCTTGACTCTCTTTTTTATTTATTTAAGGTTTAAACCTTAGCAAGTTTCCATCCTTTTAAACCAACTCTGTTGTATGCAATTTCAAGTCTTCGAAAAGTTTGTTGTAGTTGTTTCTTGTTTTTGGAGGGAGGCGATTATTTCCTACTTTCTTATACATGCTATCATTATTTGTTAACTTGTTAGGTTCTGGTTTTGGATCTTCAGTGCCTGGAAGCATGATTCTTAGAAAATTTAAATCATGAGCAGTTGATGCCAAGGTACCCTAGCATGGTTCTTTTCTTAGCAATTGATTTAGTCAATATTTTAGCTGAAAATATATGGATGATGTATAAGTGAGTATTAGTTGAAACTATATGGATGATGTACTAGTGAGCATTAGTCGATACTATATGGATGATGTACTAGTGCGCATTTGTTTTTCAGGAAGTTTTCTCGACATAAATTTATTTTGTATAGAAAAGTCTTGGCTATTCTGAAAATTGGGCAAAGTTTCTGAATAAGCATTAATCTTTAGAGAGAGAACTTGATAGCATTCTTCGGTTCTTCCATATGTAGGTCATATATTTTATTCAGTTGTGAAGTTGATGGCCTTTTACTGATTTCAGACATTTTTATTCAAGCAGGCTTGTATTTGTGCTTTAACGAGCAGAACAAAAGAACTCTTCTTAGGTCACATAGCGAGTGAAAGAAACGCCAGTGAAGGGGGACATGGCGAGTTCTGCTGTCAAAAGTTGAGTATTATTATTTTGTTTATAATAGACTTGTATATTTTAGAAATTATGGTGTTACTCCTTAAAGTTTTGAATATGTTTCTGATACAAAGCTGTAATTGGCAGGTAAATGTCGTTAAAGGTCTGAAGATGTACTGTGGTACACAATGACTGAAATTATATCTCAAAAGAATTGGTCATTGTTCTTAATATATCTGCTTTTTAGGGAGAGTATCTGGGGGAGGTTTAATTTCTTTCATTGTGTCATTTTTAGTCGTAAGACTGAATATTTAACAATAATGTAAATACAATTTTCTTTTTGACGAGTCTGTGACTAGGATAGAATGATCGTAAAGAGAACCTTGACCTTTTGTGGTACTAGATACCAGATAACATGCATATGAGGTGTAAGGAAAAAAATGTTCACGAGGAGTAGAGTTTTCATAGGGGGGAAGGGTGATTTGGCTTTTTAACGTTTCCTCCTTCACTGAACTCCTTAACTGAGAACAAGTTGTAACGTTGCCTCTTATTTATACCCCTTAAACTTTCTTATTGTCTATGGCTTTGGATGTTTGCTCCCTCTTGATAGGTGGGTTCGTGAGGGGATTATTGAAGAGAAACTTGCAACGGACTTGAATTCTTTTCAACTGGAGGTAAATTCTTTTGATTGTTTTCAATGTACTGGGAATTTAATCGTCTATATGCAAAAATACTTTTTGAGGTAATATTCAAGGATGCATATCGTCGTACTAATCTCATATCCATCATATGGCTTTGAAATATCTTATAGAACAATGAAAGCCTTCGAGTCGGACAAACAAAGCTTTCACAATTGTCATTTTGTAGCGTGGATCAAGAAATGCAATATTAG

mRNA sequence

ATGTTTGATGCCAAGGCTTGTATTTGTGCTTTAACGAGCAGAACAAAAGAACTCTTCTTAGGTCACATAGCGAGTGAAAGAAACGCCAGTGAAGGGGGACATGGCGAGTCTGAAGATGTACTGTGGTACACAATGACTGAAATTATATCTCAAAAGAATTGGTCATTGTTCTTAATATATCTGCTTTTTAGGGAGAGTATCTGGGGGAGGTGGGTTCGTGAGGGGATTATTGAAGAGAAACTTGCAACGGACTTGAATTCTTTTCAACTGGAGAACAATGAAAGCCTTCGAGTCGGACAAACAAAGCTTTCACAATTGTCATTTTGTAGCGTGGATCAAGAAATGCAATATTAG

Coding sequence (CDS)

ATGTTTGATGCCAAGGCTTGTATTTGTGCTTTAACGAGCAGAACAAAAGAACTCTTCTTAGGTCACATAGCGAGTGAAAGAAACGCCAGTGAAGGGGGACATGGCGAGTCTGAAGATGTACTGTGGTACACAATGACTGAAATTATATCTCAAAAGAATTGGTCATTGTTCTTAATATATCTGCTTTTTAGGGAGAGTATCTGGGGGAGGTGGGTTCGTGAGGGGATTATTGAAGAGAAACTTGCAACGGACTTGAATTCTTTTCAACTGGAGAACAATGAAAGCCTTCGAGTCGGACAAACAAAGCTTTCACAATTGTCATTTTGTAGCGTGGATCAAGAAATGCAATATTAG

Protein sequence

MFDAKACICALTSRTKELFLGHIASERNASEGGHGESEDVLWYTMTEIISQKNWSLFLIYLLFRESIWGRWVREGIIEEKLATDLNSFQLENNESLRVGQTKLSQLSFCSVDQEMQY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo23844Spo23844gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo23844.1Spo23844.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23844.1.CDS.6Spo23844.1.CDS.6CDS
Spo23844.1.CDS.5Spo23844.1.CDS.5CDS
Spo23844.1.CDS.4Spo23844.1.CDS.4CDS
Spo23844.1.CDS.3Spo23844.1.CDS.3CDS
Spo23844.1.CDS.2Spo23844.1.CDS.2CDS
Spo23844.1.CDS.1Spo23844.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo23844.1.exon.6Spo23844.1.exon.6exon
Spo23844.1.exon.5Spo23844.1.exon.5exon
Spo23844.1.exon.4Spo23844.1.exon.4exon
Spo23844.1.exon.3Spo23844.1.exon.3exon
Spo23844.1.exon.2Spo23844.1.exon.2exon
Spo23844.1.exon.1Spo23844.1.exon.1exon


Homology
The following BLAST results are available for this feature:
BLAST of Spo23844.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23844.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23844.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23844.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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