Spo23893.1 (mRNA) | SpinachBase

Overview


Name	Spo23893.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	B-box zinc finger family protein
Location	SpoScf_25757 : 325 .. 789 (-)
Sequence length	465

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTGAAGAGGAAATGTGAGTTATGTAGCAATATTGCTACAATATTTTGTGAATCGGATCAAGCAAATTTATGTTATGAATGTGATTCCAAAGTTCATGGTGCTAATTTTCTTGTTTCAAAACACTCTAGGACTCTTCTTTGTCATATTTGTCAATCTCCTACACTATGGTCCGGGTCCGGCCCGAAGTTCGGACCAACTCTCTCCGTTTGCCCGGGTTGCCTTATTGAAAGGCAGCGTAGAGATGTTGGTAACAATGGTAATGGTGGCCGTGAAGTGGCCGATGAAGATTACGATGATGATGATAATGATGATGACGATGACGATGACAATGACGACGATGGAGACAATGGTTATGAAGATGATGAGAGTGATGATGGTAATGATGATGTTGATGAGGATGAAGATGATGAAGAAAATCAAGTTGTTCCATGGTCATATTCAGTGTCACATCCAGGGTAA

mRNA sequence

ATGAGGGTGAAGAGGAAATGTGAGTTATGTAGCAATATTGCTACAATATTTTGTGAATCGGATCAAGCAAATTTATGTTATGAATGTGATTCCAAAGTTCATGGTGCTAATTTTCTTGTTTCAAAACACTCTAGGACTCTTCTTTGTCATATTTGTCAATCTCCTACACTATGGTCCGGGTCCGGCCCGAAGTTCGGACCAACTCTCTCCGTTTGCCCGGGTTGCCTTATTGAAAGGCAGCGTAGAGATGTTGGTAACAATGGTAATGGTGGCCGTGAAGTGGCCGATGAAGATTACGATGATGATGATAATGATGATGACGATGACGATGACAATGACGACGATGGAGACAATGGTTATGAAGATGATGAGAGTGATGATGGTAATGATGATGTTGATGAGGATGAAGATGATGAAGAAAATCAAGTTGTTCCATGGTCATATTCAGTGTCACATCCAGGGTAA

Coding sequence (CDS)

ATGAGGGTGAAGAGGAAATGTGAGTTATGTAGCAATATTGCTACAATATTTTGTGAATCGGATCAAGCAAATTTATGTTATGAATGTGATTCCAAAGTTCATGGTGCTAATTTTCTTGTTTCAAAACACTCTAGGACTCTTCTTTGTCATATTTGTCAATCTCCTACACTATGGTCCGGGTCCGGCCCGAAGTTCGGACCAACTCTCTCCGTTTGCCCGGGTTGCCTTATTGAAAGGCAGCGTAGAGATGTTGGTAACAATGGTAATGGTGGCCGTGAAGTGGCCGATGAAGATTACGATGATGATGATAATGATGATGACGATGACGATGACAATGACGACGATGGAGACAATGGTTATGAAGATGATGAGAGTGATGATGGTAATGATGATGTTGATGAGGATGAAGATGATGAAGAAAATCAAGTTGTTCCATGGTCATATTCAGTGTCACATCCAGGGTAA

Protein sequence

MRVKRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKFGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSHPG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo23893	Spo23893	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo23893.1	Spo23893.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23893.1.CDS.1	Spo23893.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo23893.1.exon.1	Spo23893.1.exon.1	exon

Homology

[Close]

BLAST of Spo23893.1 vs. NCBI nr
Match: gi|731377491|ref|XP_010667890.1| (PREDICTED: B-box zinc finger protein 32-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 196.4 bits (498), Expect = 3.600e-47
Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 1


		  
Query: 1   MRVKRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSG 60
           M +KRKCELCSN+A I+CESDQANLCYECDSK+HGANFLV+KHSRTLLCH+CQSPTLW+G
Sbjct: 1   MVMKRKCELCSNLAKIYCESDQANLCYECDSKIHGANFLVAKHSRTLLCHVCQSPTLWTG 60

Query: 61  SGPKFGPTLSVCPGCLIER----QRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDG 120
           SGPKFGPTLSVCP CL       + RDV N  N   E  D+D DD    ++DDD+++DDG
Sbjct: 61  SGPKFGPTLSVCPACLSSNRAIARHRDVKNGDNHEDEDRDDDKDDGGGSNEDDDEDNDDG 120

Query: 121 DNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSH 153
           DNG E+D SD+G+DD DE EDDEENQVVPWSYSVSH
Sbjct: 121 DNGSEEDGSDNGDDD-DEHEDDEENQVVPWSYSVSH 155

[Close]

BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1000954520|ref|XP_015578162.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4 isoform X1 [Ricinus communis])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 86/150 (57.33%), Postives = 110/150 (73.33%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESDQA+LC++CD++VH ANFLV+KHSRTLLCH+CQS T W+ SGP+
Sbjct: 2   KKCELCNSLAKMYCESDQASLCWDCDARVHAANFLVAKHSRTLLCHLCQSFTPWTASGPR 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNG-YEDD 124
             PT+S+C  C+ +   R    N +      D ++DDDDNDDDDDDD D DGD G  EDD
Sbjct: 62  LRPTVSICDNCVKDSTCRPERRNKD------DRNHDDDDNDDDDDDD-DGDGDTGDSEDD 121

Query: 125 ESDDGNDDVDEDEDDEENQVVPWSYSVSHP 154
           ES DG      DEDDEENQVVPWS + + P
Sbjct: 122 ESGDGG-----DEDDEENQVVPWSSTSAPP 139

[Close]

BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1000954522|ref|XP_015578163.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4 isoform X2 [Ricinus communis])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 86/150 (57.33%), Postives = 110/150 (73.33%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESDQA+LC++CD++VH ANFLV+KHSRTLLCH+CQS T W+ SGP+
Sbjct: 2   KKCELCNSLAKMYCESDQASLCWDCDARVHAANFLVAKHSRTLLCHLCQSFTPWTASGPR 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNG-YEDD 124
             PT+S+C  C+ +   R    N +      D ++DDDDNDDDDDDD D DGD G  EDD
Sbjct: 62  LRPTVSICDNCVKDSTCRPERRNKD------DRNHDDDDNDDDDDDD-DGDGDTGDSEDD 121

Query: 125 ESDDGNDDVDEDEDDEENQVVPWSYSVSHP 154
           ES DG      DEDDEENQVVPWS + + P
Sbjct: 122 ESGDGG-----DEDDEENQVVPWSSTSAPP 139

[Close]

BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1009109030|ref|XP_015887897.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 139.0 bits (349), Expect = 6.800e-30
Identity = 86/156 (55.13%), Postives = 112/156 (71.79%), Query Frame = 1


		  
Query: 6   KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKF 65
           KCELC ++A ++CESDQA+LC++CD++VHGANFLV+KHSRTLLCH+CQS T W+G+G K 
Sbjct: 2   KCELCDSVAKMYCESDQASLCWDCDAQVHGANFLVAKHSRTLLCHVCQSLTPWNGTGRKL 61

Query: 66  GPTLSVCPGCLIERQRRDVGN---NGNGGREVADEDYDDDDNDD--DDDDDNDDDGDNGY 125
           GPT+SVC  C+   ++ +  N   N   G E  DED D+D  +D  +DDDD DDD  +G 
Sbjct: 62  GPTVSVCENCVNRLKQNEAINQARNQRNGEEDDDEDEDEDHVEDHLEDDDDEDDDNSDGD 121

Query: 126 EDDESD---DGNDDVDEDEDDEENQVVPWSYSVSHP 154
           +DD+ D   DG+ D D DE DEENQVVPWS +   P
Sbjct: 122 DDDDGDDDGDGDGDGDGDEGDEENQVVPWSSTPPPP 157

[Close]

BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1009109028|ref|XP_015887891.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 139.0 bits (349), Expect = 6.800e-30
Identity = 86/156 (55.13%), Postives = 112/156 (71.79%), Query Frame = 1


		  
Query: 6   KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKF 65
           KCELC ++A ++CESDQA+LC++CD++VHGANFLV+KHSRTLLCH+CQS T W+G+G K 
Sbjct: 2   KCELCDSVAKMYCESDQASLCWDCDAQVHGANFLVAKHSRTLLCHVCQSLTPWNGTGRKL 61

Query: 66  GPTLSVCPGCLIERQRRDVGN---NGNGGREVADEDYDDDDNDD--DDDDDNDDDGDNGY 125
           GPT+SVC  C+   ++ +  N   N   G E  DED D+D  +D  +DDDD DDD  +G 
Sbjct: 62  GPTVSVCENCVNRLKQNEAINQARNQRNGEEDDDEDEDEDHVEDHLEDDDDEDDDNSDGD 121

Query: 126 EDDESD---DGNDDVDEDEDDEENQVVPWSYSVSHP 154
           +DD+ D   DG+ D D DE DEENQVVPWS +   P
Sbjct: 122 DDDDGDDDGDGDGDGDGDEGDEENQVVPWSSTPPPP 157

[Close]

BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B260_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012890 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.500e-47
Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 1


		  
Query: 1   MRVKRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSG 60
           M +KRKCELCSN+A I+CESDQANLCYECDSK+HGANFLV+KHSRTLLCH+CQSPTLW+G
Sbjct: 1   MVMKRKCELCSNLAKIYCESDQANLCYECDSKIHGANFLVAKHSRTLLCHVCQSPTLWTG 60

Query: 61  SGPKFGPTLSVCPGCLIER----QRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDG 120
           SGPKFGPTLSVCP CL       + RDV N  N   E  D+D DD    ++DDD+++DDG
Sbjct: 61  SGPKFGPTLSVCPACLSSNRAIARHRDVKNGDNHEDEDRDDDKDDGGGSNEDDDEDNDDG 120

Query: 121 DNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSH 153
           DNG E+D SD+G+DD DE EDDEENQVVPWSYSVSH
Sbjct: 121 DNGSEEDGSDNGDDD-DEHEDDEENQVVPWSYSVSH 155

[Close]

BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: A0A061GF15_THECC (B-box type zinc finger family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_030024 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.100e-30
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESD A LC++CDS+VHGANFLV+KH RTLLCH+CQSPT W+GSGPK
Sbjct: 2   KKCELCNSLAKMYCESDLAILCWDCDSRVHGANFLVAKHLRTLLCHLCQSPTPWNGSGPK 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+S C  C+     R+  NN     E   ED DDDD+ D +DD  DDDGDNG     
Sbjct: 62  LGPTVSACDNCVNRNACREESNNEETHDE---EDEDDDDDLDGEDDSEDDDGDNG----- 121

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                       DDEENQVVPWS
Sbjct: 122 ------------DDEENQVVPWS 124

[Close]

BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: A0A061GMY3_THECC (B-box type zinc finger family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_030024 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.100e-30
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESD A LC++CDS+VHGANFLV+KH RTLLCH+CQSPT W+GSGPK
Sbjct: 47  KKCELCNSLAKMYCESDLAILCWDCDSRVHGANFLVAKHLRTLLCHLCQSPTPWNGSGPK 106

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+S C  C+     R+  NN     E   ED DDDD+ D +DD  DDDGDNG     
Sbjct: 107 LGPTVSACDNCVNRNACREESNNEETHDE---EDEDDDDDLDGEDDSEDDDGDNG----- 166

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                       DDEENQVVPWS
Sbjct: 167 ------------DDEENQVVPWS 169

[Close]

BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: V4UE20_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016798mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-29
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC + A +FCESDQA+LC++CD+KVHGANFLV+KHSRTLLCH+CQS T W+GSGPK
Sbjct: 2   KKCELCGSPAKMFCESDQASLCWDCDTKVHGANFLVAKHSRTLLCHVCQSLTPWNGSGPK 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+SVC  C+ +          N G    D+DYDD + ++DDDDD  D          
Sbjct: 62  LGPTISVCNVCVGDGSGSTSREETNRGETYTDDDYDDANEEEDDDDDGGD---------- 121

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                   ++++DDEENQVVPWS
Sbjct: 122 --------EDEDDDEENQVVPWS 126

[Close]

BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: V4W880_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016798mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-29
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC + A +FCESDQA+LC++CD+KVHGANFLV+KHSRTLLCH+CQS T W+GSGPK
Sbjct: 2   KKCELCGSPAKMFCESDQASLCWDCDTKVHGANFLVAKHSRTLLCHVCQSLTPWNGSGPK 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+SVC  C+ +          N G    D+DYDD + ++DDDDD  D          
Sbjct: 62  LGPTISVCNVCVGDGSGSTSREETNRGETYTDDDYDDANEEEDDDDDGGD---------- 121

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                   ++++DDEENQVVPWS
Sbjct: 122 --------EDEDDDEENQVVPWS 126

[Close]

BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: MIP1B_ARATH (B-box domain protein 31 OS=Arabidopsis thaliana GN=MIP1B PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.500e-10
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1


		  
Query: 6  KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPT 57
          +CELC   A++FCE+D A LC +CD  VHGANFL  +H R +LC  CQ  T
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80

[Close]

BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: MIP1A_ARATH (B-box domain protein 30 OS=Arabidopsis thaliana GN=MIP1A PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.900e-9
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1


		  
Query: 7  CELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKFG 66
          CELC   AT++CE+D A LC +CD  VH ANFL  +H R ++C  C+  T     G  F 
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFN 91

Query: 67 PTL 70
            L
Sbjct: 92 VVL 94

[Close]

BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.300e-8
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1


		  
Query: 5  RKCELC-SNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQ 54
          R C+ C S  AT+FC +D A LC +CD K+H AN L S+H R  LC +C+
Sbjct: 6  RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55

[Close]

BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: BBX32_ARATH (B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.300e-8
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1


		  
Query: 7  CELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGP 64
          CELC   A + C +D A LC  CD+K H +NFL ++H R ++C  C+S T    SGP
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGP 61

[Close]

BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.300e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1


		  
Query: 3  VKRKCELCSNI-ATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQS 55
          ++R CE C    A ++C +D ANLC  CD+KVH AN L  +H RT+LC  C++
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62

[Close]

BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT4G27310.1 (B-box type zinc finger family protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.100e-25
Identity = 73/163 (44.79%), Postives = 101/163 (61.96%), Query Frame = 1


		  
Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KC+LC+ +A ++CESDQA+LC++CD KVHGANFLV+KH+R LLC  CQS T W  +G +
Sbjct: 3   KKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLR 62

Query: 65  FGPTLSVCPGC--------------LIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDD 124
            GPT SVC  C              L E + ++  N+     +   ED+ D D+ +  DD
Sbjct: 63  LGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSFESEEDRIREDHGDGDDAESYDD 122

Query: 125 DNDDDGDNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSHP 154
           D ++D D  Y DDE +D  DD D D+++ ENQVVPWS +   P
Sbjct: 123 DEEEDEDEEYSDDEDED--DDEDGDDEEAENQVVPWSAAAQVP 163

[Close]

BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT5G54470.1 (B-box type zinc finger family protein)

HSP 1 Score: 94.7 bits (234), Expect = 5.200e-20
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 1


		  
Query: 4   KRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGP 63
           K+KCELC  +A ++CESDQA+LC++CD KVHGANFLV+KH R LLC  CQS T W  SG 
Sbjct: 3   KKKCELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGL 62

Query: 64  KFGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDD 123
             GPT+S+C  CL  ++     N+   GR        D + + +++    +DG   Y D+
Sbjct: 63  NLGPTVSICESCLARKKNN---NSSLAGR--------DQNLNQEEEIIGCNDGAESY-DE 122

Query: 124 ESDDGNDDVDEDEDDEENQVVP 146
           ESD+     DE+E++ ENQVVP
Sbjct: 123 ESDE-----DEEEEEVENQVVP 127

[Close]

BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT3G21890.1 (B-box type zinc finger family protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.600e-11
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1


		  
Query: 6  KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPT 57
          +CELC   A++FCE+D A LC +CD  VHGANFL  +H R +LC  CQ  T
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80

[Close]

BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT4G15248.1 (B-box type zinc finger family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.200e-10
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1


		  
Query: 7  CELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKFG 66
          CELC   AT++CE+D A LC +CD  VH ANFL  +H R ++C  C+  T     G  F 
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFN 91

Query: 67 PTL 70
            L
Sbjct: 92 VVL 94

[Close]

BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT2G24790.1 (CONSTANS-like 3)

HSP 1 Score: 59.3 bits (142), Expect = 2.400e-9
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1


		  
Query: 5  RKCELC-SNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQ 54
          R C+ C S  AT+FC +D A LC +CD K+H AN L S+H R  LC +C+
Sbjct: 6  RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55

The following BLAST results are available for this feature:

BLAST of Spo23893.1 vs. NCBI nr
BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
BLAST of Spo23893.1 vs. TAIR (Arabidopsis)

BLAST of Spo23893.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731377491\|ref\|XP_010667890.1\|	3.6e-47	71.1	PREDICTED: B-box zinc finger p...	[more]
gi\|1000954520\|ref\|XP_015578162.1\|	3.0e-30	57.3	PREDICTED: zinc finger protein...	[more]
gi\|1000954522\|ref\|XP_015578163.1\|	3.0e-30	57.3	PREDICTED: zinc finger protein...	[more]
gi\|1009109030\|ref\|XP_015887897.1\|	6.8e-30	55.1	PREDICTED: zinc finger protein...	[more]
gi\|1009109028\|ref\|XP_015887891.1\|	6.8e-30	55.1	PREDICTED: zinc finger protein...	[more]

BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8B260_BETVU	2.5e-47	71.1	Uncharacterized protein OS=Bet...	[more]
A0A061GF15_THECC	6.1e-30	55.9	B-box type zinc finger family ...	[more]
A0A061GMY3_THECC	6.1e-30	55.9	B-box type zinc finger family ...	[more]
V4UE20_9ROSI	1.0e-29	53.1	Uncharacterized protein OS=Cit...	[more]
V4W880_9ROSI	1.0e-29	53.1	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
MIP1B_ARATH	4.5e-10	54.9	B-box domain protein 31 OS=Ara...	[more]
MIP1A_ARATH	3.9e-9	44.4	B-box domain protein 30 OS=Ara...	[more]
COL3_ARATH	4.3e-8	50.0	Zinc finger protein CONSTANS-L...	[more]
BBX32_ARATH	7.3e-8	45.6	B-box zinc finger protein 32 O...	[more]
COLX_ARATH	7.3e-8	47.1	Putative zinc finger protein A...	[more]

BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G27310.1	3.1e-25	44.7	B-box type zinc finger family ...	[more]
AT5G54470.1	5.2e-20	46.4	B-box type zinc finger family ...	[more]
AT3G21890.1	2.6e-11	54.9	B-box type zinc finger family ...	[more]
AT4G15248.1	2.2e-10	44.4	B-box type zinc finger family ...	[more]
AT2G24790.1	2.4e-9	50.0	CONSTANS-like 3	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 4..45 score: 2.
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 2..48 score: 3.4
IPR000315	B-box-type zinc finger	PROFILE	PS50119	ZF_BBOX	coord: 2..48 score:
None	No IPR available	PANTHER	PTHR31717	FAMILY NOT NAMED	coord: 1..153 score: 7.6
None	No IPR available	PANTHER	PTHR31717:SF7	B-BOX DOMAIN PROTEIN 26-RELATED	coord: 1..153 score: 7.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005622	intracellular
molecular_function	GO:0008270	zinc ion binding