Spo24007.1 (mRNA) | SpinachBase

Overview


Name	Spo24007.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Nse4, component of Smc5/6 DNA repair complex protein
Location	SpoScf_00396 : 67130 .. 70750 (+)
Sequence length	1510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTGCCCAATTAGGGTTTCATCCTCTTCAGTCTCATCAAAACTTAGTGCGAGTTCCTGAATTCAGAACCCGAATTTTAGGGTTTTAGCGACTATGGGGAAAGTGAAGATAGAGAAAGGAAGCACCAGTGCTGTAGTTAGACAATTCAGGAGTAGGGAAACCGCCGCTATTTCAAGTTCCGGTGATTCCGCCGCCGAACATCAGAATAAGCCGCCCCTCCGTAAGTCACGGCCACCGCCGTCGCAGCATCATGGAAGTGGAGGAGAAGAGGAGGAAGATGAAGAAGATGAAGTTGTCGTAAGGAGAAATCTCCGTTCGAAATATCTCGCCGTCAAAAATTTACTATCCAGTTACTTTCTCTCTCTTCCCTATGAAATTTTCGATTATATTTGATGTTTATTGAGTATTTCTGTTGTTGTTGTCTTTGTTAATTGAACTAATGAGGTTAATTGGATATGCAGGTGGAGCGGAGGATTCGTTGCGGACGGATTCTGATAAGTTCAAGGCTATGTTTGATGAAGTTGAGAGTTTGCATAAGAAAGGTTGTTCATTGATTACAACATTTAACTTCCTTTTTAAGATTTTTTCAATTGCAATTTCTTTATAATCATGGTTTTAGCTCATATATGGCATTCTATTATGTGTATAATTGTGAAGGCAGCTTATATATCAATATTAATATGCAAGTTGAATATACGAGGTTCTTGAATGCTGATATATTTTTGGAACATGCACTTGCTAGCTCACAAAAACAACCCGGATAAGAGGGTTTGTATGCTAATCTGTGTTAGACTAGCTTATTTACCTTTTCAAATTGATGAATTGAACTTGGATTTTCTGGTTAATTTTGAGCTGTAGGTTATATTCGTTCACTTATGAAGCTGCTTGTTAGAAAGAAATAATTTTAAGAAGTTGTAACACGAAACTGGCGGGGTGTCGTTTTGACTTAGGGGTAGAAAACGGCCATATACTCCAGAATAGGAATATAAAATTAATTTCAAAAGTGTTGTTCCTAGATAAACAAAAGAGGCAGAGATTTCCAGGGTATCAGTTACCAGAAATTATCTCTTTCTTTCTCTATAAAGCATTTGAATACTGTATTTTCCCCTGTGCTAGTCAGTCTGAAACATAAATATGAAGTCAAGGGACGTTTATGCGAGCTAGACTAAGTCATATACGCCTAAATTTTTATGCAGTTTCAATGAGCATGATTTGAGTATCATAGGCTCATAGCGAGATAATAATAAAGACACAGTCTTAAAATGAGAGGTGTTGTACGACTACTAACTCTGGTTTTCATTTTGTTTTTTCTTTGTATTGGTTTCAGTTAGTAAGCCACGTGAGCAAGTAGCTGATGCAGAGGCTTTGTTTGACATAACAAGCAGTTTTGTGAAATCTGTCAAGGCACAAAAAAATGAGGGGTTGACTCCATCAGATTTTGTGTCTTGCCTGCTTAAGGATTATGGTCGGCAAGGTAGAGCTACAAGCAGTGCAGATGATTCTGGGAACTCGATAATTTGGAAAGACATCGGGCTTGCAGTTTCTCATATTTTCAGAAAAGGCACAGGATGTTCTACCATGTTAGTTACTTGTTGTCTTGCTGCAAACCTTCCTATTAATTTGAGCTTAATCATTGGTTTTATTAGCCGGATTTCACATGTTAATTTTACAGGCTAGGGCCTATGAGTTCTGAACTAAAGAGAAGGAAAACTGTTGTTCGGAAAAAGCATGTCAGACCAACTGATACTGCACGGCCTGAAGAGGTAGAGTTGCTTATTATATAACTGCCTTTTGTAACTCTTGCTTGGTAGAGAAAAGAGGCAAGATGATTGGTTGCTCCTTGCTGAAAGATGTCTTTGCAATGTATTTCATATGTTATTCACTGGATTCCTGTTTGGTTGTATTGCAGCTCGATAACACTACGGAAGTGAAAACTGATACGGACAAGAACATGTCACTAATGTTTGACATTTTGAGGAAAAATCGAAGGGTCCGGCTGGAAAATATAATCTTGGACAGAAGTTCTTTTGCACAGACAGTAGAAAATTTATTCGCTTTGTCATTTCTAGTGAAAGATGGAAGAGCTGAGATTACTGCTAATACAAATGGCCATTTTGTTTGTAAGAAAAGTTGTTAAATTAACTGTTTATGTTTATGCGCAAGAAATCTCCTTGCTAAGGTACCATTTCTTGCCTATTGGCAGGCCCTAGGAATGCTCCAGGTGCTGAAGCAGTCACATCAGGCAAAGTTTCTTACAGTCACTTTGTCTTCAGATTGGACTTCAAGGACTGGAAGGTAAATCTGTAGTTCAAAGCCTAACCATCTTTAATATCCTTTGAATCTTATGAAAGTAACTATTCTGCATTTCAGCTGGTCTTTGAACAAAAGTTGAGCTCCTATCTATGTTAGTCAGTTTGCTTAAGCTGTGTAAGTTTGTTGTTTGATAGTTTCATCTAGTTTGTGAGAAATTTGGCATACGACTTCCATGGCAGACATGTAGCTTGATTCTACTTTCATTATTTTGAAGCCGGGGTTGGAATTTCCCAAGGCATAGTTACTTGAGTATTCAAGCTCATGTGATTCATGAACTTTTCTCAACAGAATTCACTAGTTATCTCTGAAAAAGTCTCTACAAATTCTAGCATACTTGTTACTCTATTGAGTGTTGCTTCCAGTAAGTTGGCTGATTCAAAGATGTGCTATAATATGTTTTGTATGACTTGTTTGATTTCACAGCTGATGTTGGATTCTGTTGGAGAAGGCGAGGAGATGATGCCACACAGAGTTGAAGCAGACACATTTGGTCACTCAAAGTTACCAGCAGGATCAGATCATGAAATAGCTGCTATGATGACTCCAATTAAAAAACTATCAAGAAATCGAGGTCTAGTTCTACTACAGTAACAGAGAGTAATGAAAATAGATCAAGACCACTTGTAAGTAAAGAGTTTTTAGACCAGTTGTTGTAATATCAAAAAGAGGTTGATACCTAAAATCAACTTCAACTCTGCAATCAATGAAGTAAATTCTCAATCATTAAGTCAAGGTCTAATAAGATAAGATAAAATAAGAAAAGTAAATCTTAATGGCCCAACCCAATATCTTGGGACATCATTTTGCTATCAATCCCAAGACCCAAAGTTCTAATACCAAGTTGGAACTTGGCAACATAAGCAAGAAAATTTAAACTCTGGTTGACATTCAAAATATCAAGTAACTTAATGGTAGTGTTTCTTCGGAGATTATCCGCTCCTTGAACAACCCTAGACATGGACAAACATAGTCCTTGAACTGCCTTGGGAAACTTAGAAACCTCTCCATCAACTAACCTCCCATAATGTTTAGCGAGGTTCAACAATGGTGGTGCTCCTGTGGTTTCTTGCACCGCGGCCAAGGATTCCAAATGTGTCCTCTCCTCCCTTGCAACATCAGCTTTCAAAACTGTTAGCCTTTCTAGTTGCTCTAATTCCAAGTCAAAAACAGAAAGCTCAAGAAGGCGAAAAGCTAAAGATGGTTTGAAACCAGCCACCCAAAGGAAACTCTTTTCGAAAGAGGTTAGCCAAGGTGGGGAAAAGAGGAGAAATGGATCTTCCCAAATGACTCTAGCCTTCTCATCGTAG

mRNA sequence

AAGTTGCCCAATTAGGGTTTCATCCTCTTCAGTCTCATCAAAACTTAGTGCGAGTTCCTGAATTCAGAACCCGAATTTTAGGGTTTTAGCGACTATGGGGAAAGTGAAGATAGAGAAAGGAAGCACCAGTGCTGTAGTTAGACAATTCAGGAGTAGGGAAACCGCCGCTATTTCAAGTTCCGGTGATTCCGCCGCCGAACATCAGAATAAGCCGCCCCTCCGTAAGTCACGGCCACCGCCGTCGCAGCATCATGGAAGTGGAGGAGAAGAGGAGGAAGATGAAGAAGATGAAGTTGTCGTAAGGAGAAATCTCCGTTCGAAATATCTCGCCGTCAAAAATTTACTATCCAGTGGAGCGGAGGATTCGTTGCGGACGGATTCTGATAAGTTCAAGGCTATGTTTGATGAAGTTGAGAGTTTGCATAAGAAAGTTAGTAAGCCACGTGAGCAAGTAGCTGATGCAGAGGCTTTGTTTGACATAACAAGCAGTTTTGTGAAATCTGTCAAGGCACAAAAAAATGAGGGGTTGACTCCATCAGATTTTGTGTCTTGCCTGCTTAAGGATTATGGTCGGCAAGGTAGAGCTACAAGCAGTGCAGATGATTCTGGGAACTCGATAATTTGGAAAGACATCGGGCTTGCAGTTTCTCATATTTTCAGAAAAGGCACAGGATGTTCTACCATGCTAGGGCCTATGAGTTCTGAACTAAAGAGAAGGAAAACTGTTGTTCGGAAAAAGCATGTCAGACCAACTGATACTGCACGGCCTGAAGAGCTCGATAACACTACGGAAGTGAAAACTGATACGGACAAGAACATGTCACTAATGTTTGACATTTTGAGGAAAAATCGAAGGGTCCGGCTGGAAAATATAATCTTGGACAGAAGTTCTTTTGCACAGACAGTAGAAAATTTATTCGCTTTGTCATTTCTAGTGAAAGATGGAAGAGCTGAGATTACTGCTAATACAAATGGCCATTTTGTTTGTAAGAAAAGCCCTAGGAATGCTCCAGGTGCTGAAGCAGTCACATCAGGCAAAGTTTCTTACAGTCACTTTGTCTTCAGATTGGACTTCAAGGACTGGAAGCTGATGTTGGATTCTGTTGGAGAAGGCGAGGAGATGATGCCACACAGAGTTGAAGCAGACACATTTGGTCACTCAAAGTTACCAGCAGGATCAGATCATGAAATAGCTGCTATGATGACTCCAATTAAAAAACTATCAAGAAATCGAGCGAGGTTCAACAATGGTGGTGCTCCTGTGGTTTCTTGCACCGCGGCCAAGGATTCCAAATGTGTCCTCTCCTCCCTTGCAACATCAGCTTTCAAAACTGTTAGCCTTTCTAGTTGCTCTAATTCCAAGTCAAAAACAGAAAGCTCAAGAAGGCGAAAAGCTAAAGATGGTTTGAAACCAGCCACCCAAAGGAAACTCTTTTCGAAAGAGGTTAGCCAAGGTGGGGAAAAGAGGAGAAATGGATCTTCCCAAATGACTCTAGCCTTCTCATCGTAG

Coding sequence (CDS)

ATGGGGAAAGTGAAGATAGAGAAAGGAAGCACCAGTGCTGTAGTTAGACAATTCAGGAGTAGGGAAACCGCCGCTATTTCAAGTTCCGGTGATTCCGCCGCCGAACATCAGAATAAGCCGCCCCTCCGTAAGTCACGGCCACCGCCGTCGCAGCATCATGGAAGTGGAGGAGAAGAGGAGGAAGATGAAGAAGATGAAGTTGTCGTAAGGAGAAATCTCCGTTCGAAATATCTCGCCGTCAAAAATTTACTATCCAGTGGAGCGGAGGATTCGTTGCGGACGGATTCTGATAAGTTCAAGGCTATGTTTGATGAAGTTGAGAGTTTGCATAAGAAAGTTAGTAAGCCACGTGAGCAAGTAGCTGATGCAGAGGCTTTGTTTGACATAACAAGCAGTTTTGTGAAATCTGTCAAGGCACAAAAAAATGAGGGGTTGACTCCATCAGATTTTGTGTCTTGCCTGCTTAAGGATTATGGTCGGCAAGGTAGAGCTACAAGCAGTGCAGATGATTCTGGGAACTCGATAATTTGGAAAGACATCGGGCTTGCAGTTTCTCATATTTTCAGAAAAGGCACAGGATGTTCTACCATGCTAGGGCCTATGAGTTCTGAACTAAAGAGAAGGAAAACTGTTGTTCGGAAAAAGCATGTCAGACCAACTGATACTGCACGGCCTGAAGAGCTCGATAACACTACGGAAGTGAAAACTGATACGGACAAGAACATGTCACTAATGTTTGACATTTTGAGGAAAAATCGAAGGGTCCGGCTGGAAAATATAATCTTGGACAGAAGTTCTTTTGCACAGACAGTAGAAAATTTATTCGCTTTGTCATTTCTAGTGAAAGATGGAAGAGCTGAGATTACTGCTAATACAAATGGCCATTTTGTTTGTAAGAAAAGCCCTAGGAATGCTCCAGGTGCTGAAGCAGTCACATCAGGCAAAGTTTCTTACAGTCACTTTGTCTTCAGATTGGACTTCAAGGACTGGAAGCTGATGTTGGATTCTGTTGGAGAAGGCGAGGAGATGATGCCACACAGAGTTGAAGCAGACACATTTGGTCACTCAAAGTTACCAGCAGGATCAGATCATGAAATAGCTGCTATGATGACTCCAATTAAAAAACTATCAAGAAATCGAGCGAGGTTCAACAATGGTGGTGCTCCTGTGGTTTCTTGCACCGCGGCCAAGGATTCCAAATGTGTCCTCTCCTCCCTTGCAACATCAGCTTTCAAAACTGTTAGCCTTTCTAGTTGCTCTAATTCCAAGTCAAAAACAGAAAGCTCAAGAAGGCGAAAAGCTAAAGATGGTTTGAAACCAGCCACCCAAAGGAAACTCTTTTCGAAAGAGGTTAGCCAAGGTGGGGAAAAGAGGAGAAATGGATCTTCCCAAATGACTCTAGCCTTCTCATCGTAG

Protein sequence

MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEEEDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQVADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDIGLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDKNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPAGSDHEIAAMMTPIKKLSRNRARFNNGGAPVVSCTAAKDSKCVLSSLATSAFKTVSLSSCSNSKSKTESSRRRKAKDGLKPATQRKLFSKEVSQGGEKRRNGSSQMTLAFSS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo24007	Spo24007	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo24007.1	Spo24007.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24007.1.exon.1	Spo24007.1.exon.1	exon
Spo24007.1.exon.2	Spo24007.1.exon.2	exon
Spo24007.1.exon.3	Spo24007.1.exon.3	exon
Spo24007.1.exon.4	Spo24007.1.exon.4	exon
Spo24007.1.exon.5	Spo24007.1.exon.5	exon
Spo24007.1.exon.6	Spo24007.1.exon.6	exon
Spo24007.1.exon.7	Spo24007.1.exon.7	exon
Spo24007.1.exon.8	Spo24007.1.exon.8	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24007.1.utr5p.1	Spo24007.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo24007.1.CDS.1	Spo24007.1.CDS.1	CDS
Spo24007.1.CDS.2	Spo24007.1.CDS.2	CDS
Spo24007.1.CDS.3	Spo24007.1.CDS.3	CDS
Spo24007.1.CDS.4	Spo24007.1.CDS.4	CDS
Spo24007.1.CDS.5	Spo24007.1.CDS.5	CDS
Spo24007.1.CDS.6	Spo24007.1.CDS.6	CDS
Spo24007.1.CDS.7	Spo24007.1.CDS.7	CDS
Spo24007.1.CDS.8	Spo24007.1.CDS.8	CDS

Homology

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BLAST of Spo24007.1 vs. NCBI nr
Match: gi|902155024|gb|KNA05865.1| (hypothetical protein SOVF_186220 isoform A [Spinacia oleracea])

HSP 1 Score: 728.0 bits (1878), Expect = 1.000e-206
Identity = 377/380 (99.21%), Postives = 377/380 (99.21%), Query Frame = 1


		  
Query: 1   MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 60
           MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE
Sbjct: 70  MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 129

Query: 61  EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 120
           EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV
Sbjct: 130 EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 189

Query: 121 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 180
           ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI
Sbjct: 190 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 249

Query: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 240
           GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK
Sbjct: 250 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 309

Query: 241 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKK 300
           NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC  
Sbjct: 310 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC-- 369

Query: 301 SPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA 360
            PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA
Sbjct: 370 -PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA 429

Query: 361 GSDHEIAAMMTPIKKLSRNR 381
           GSDHEIAAMMTPIKKLSRNR
Sbjct: 430 GSDHEIAAMMTPIKKLSRNR 446

[Close]

BLAST of Spo24007.1 vs. NCBI nr
Match: gi|902155025|gb|KNA05866.1| (hypothetical protein SOVF_186220 isoform B [Spinacia oleracea])

HSP 1 Score: 631.7 bits (1628), Expect = 1.000e-177
Identity = 329/335 (98.21%), Postives = 331/335 (98.81%), Query Frame = 1


		  
Query: 1   MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 60
           MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE
Sbjct: 70  MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 129

Query: 61  EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 120
           EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV
Sbjct: 130 EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 189

Query: 121 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 180
           ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI
Sbjct: 190 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 249

Query: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 240
           GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK
Sbjct: 250 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 309

Query: 241 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKK 300
           NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC  
Sbjct: 310 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC-- 369

Query: 301 SPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLD 336
            PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKL+ +
Sbjct: 370 -PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLVFE 401

[Close]

BLAST of Spo24007.1 vs. NCBI nr
Match: gi|902239744|gb|KNA25693.1| (hypothetical protein SOVF_004240 [Spinacia oleracea])

HSP 1 Score: 617.5 bits (1591), Expect = 2.000e-173
Identity = 327/383 (85.38%), Postives = 346/383 (90.34%), Query Frame = 1


		  
Query: 1   MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 60
           MGKVK EKG+TSAVVR+ R R+T A+S+SGDSAAEHQN+P  RKSRPPPSQ +GSGGEEE
Sbjct: 1   MGKVKREKGTTSAVVRELRGRKTGAVSTSGDSAAEHQNQPLQRKSRPPPSQKNGSGGEEE 60

Query: 61  EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 120
           E EEDEVVVRRNLRSKYLAVKNLLS GA      DSDKFKAM DEVESLHKKV KPREQV
Sbjct: 61  E-EEDEVVVRRNLRSKYLAVKNLLSGGA-----ADSDKFKAMIDEVESLHKKVRKPREQV 120

Query: 121 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 180
           ADAEALFDITSSFVKSVKAQKNEG+TPSDFVSCLLKDYGRQGRATSS DDSGNSIIWKDI
Sbjct: 121 ADAEALFDITSSFVKSVKAQKNEGVTPSDFVSCLLKDYGRQGRATSSIDDSGNSIIWKDI 180

Query: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 240
           GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHV+PTDT+RPEELDNTTE KTDTDK
Sbjct: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVKPTDTSRPEELDNTTEEKTDTDK 240

Query: 241 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKK 300
           NMS+MF ILRK+RRVRLEN+ILDRSSFAQTVENLFALSFLVKDGRAEITAN NGHFVC  
Sbjct: 241 NMSIMFGILRKDRRVRLENLILDRSSFAQTVENLFALSFLVKDGRAEITANKNGHFVC-- 300

Query: 301 SPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA 360
            PRNAP AE+VTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEE+MPHRV A+T  HS+LP 
Sbjct: 301 -PRNAPSAESVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEELMPHRVPAETSAHSELPT 360

Query: 361 GSD---HEIAAMMTPIKKLSRNR 381
             +   HE AA  TPI+KLSRNR
Sbjct: 361 EPENIVHEKAATTTPIRKLSRNR 374

[Close]

BLAST of Spo24007.1 vs. NCBI nr
Match: gi|731323872|ref|XP_010672667.1| (PREDICTED: non-structural maintenance of chromosomes element 4 homolog A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 495.0 bits (1273), Expect = 1.500e-136
Identity = 265/387 (68.48%), Postives = 302/387 (78.04%), Query Frame = 1


		  
Query: 1   MGKVKIEKGS----TSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSG 60
           M +VK E GS    T+  VR+ RS +  A S+S +   +H                    
Sbjct: 1   MARVKKEAGSRSNNTNTRVRELRSSKIEANSTSNEQQQQHV------------------- 60

Query: 61  GEEEEDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKP 120
             +E ++EDEVVVRRNLRS+YLAVKNLLS    D  + DS +FK++ DEVESLH KV KP
Sbjct: 61  --DEVEQEDEVVVRRNLRSRYLAVKNLLSGDTHDLSQPDSQRFKSIIDEVESLHAKVEKP 120

Query: 121 REQVADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSII 180
           REQVADAEAL DITSSF+KSVKAQKNEG+TPSDFVSCL +D+GRQGRATSS D+S + ++
Sbjct: 121 REQVADAEALMDITSSFLKSVKAQKNEGVTPSDFVSCLFRDFGRQGRATSSVDNSSDLVL 180

Query: 181 WKDIGLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKT 240
           WKDIGLAVSHIFRKGTGC TMLGPMSSELKRRK++VRKKHV+PTDT+RPEEL+N  E KT
Sbjct: 181 WKDIGLAVSHIFRKGTGCCTMLGPMSSELKRRKSIVRKKHVKPTDTSRPEELNNLKEEKT 240

Query: 241 DTDKNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHF 300
           DTDKNMS+MF ILRKNRRVRLEN++L+R SFAQTVENLFA SFLVKDGRAEITAN NGHF
Sbjct: 241 DTDKNMSIMFGILRKNRRVRLENLVLNRKSFAQTVENLFAFSFLVKDGRAEITANENGHF 300

Query: 301 VCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHS 360
           VC   PRNAP AEAV SG+VSYSHFVFR D+KDWKLMLDSV EGEE+MPHRV ADTF  S
Sbjct: 301 VC---PRNAPAAEAVASGRVSYSHFVFRFDYKDWKLMLDSVVEGEELMPHRVPADTFADS 360

Query: 361 KLPAGS---DHEIAAMMTPIKKLSRNR 381
           + PA S   D E  A  TPI+KLSRNR
Sbjct: 361 EFPAESANADPERVATTTPIRKLSRNR 363

[Close]

BLAST of Spo24007.1 vs. NCBI nr
Match: gi|297739846|emb|CBI30028.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 399.1 bits (1024), Expect = 1.100e-107
Identity = 208/318 (65.41%), Postives = 254/318 (79.87%), Query Frame = 1


		  
Query: 67  VVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQVADAEAL 126
           V  RR LRS+YLAVKN +  G ED  + DSDKFK++ +EVESLH++V KPREQVADAEAL
Sbjct: 102 VTERRVLRSRYLAVKNQICDGREDITKVDSDKFKSIINEVESLHQQVQKPREQVADAEAL 161

Query: 127 FDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDIGLAVSH 186
            DIT++ V SVKA  NEG+TPSDFVSCLL+++G+    ++SA+D+GNSI+WKDIGL VSH
Sbjct: 162 LDITNTLVTSVKAHGNEGITPSDFVSCLLQEFGQNPGVSTSAEDAGNSIVWKDIGLVVSH 221

Query: 187 IFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNT-TEVKTDTDKNMSLM 246
           IF++ +GC TMLGPM++E+K+RK VV  K VRPT++ARPEELD+T  E K+DTDKNMS+M
Sbjct: 222 IFKRASGCCTMLGPMNTEMKQRKPVVHNKRVRPTESARPEELDDTVVEEKSDTDKNMSIM 281

Query: 247 FDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNG-HFVCKKSPRN 306
           FDILRKNRRVRLEN+IL+R+SFAQTVENLFALSFLVKDGRAEIT +  G H V   SPRN
Sbjct: 282 FDILRKNRRVRLENLILNRNSFAQTVENLFALSFLVKDGRAEITVDGRGCHLV---SPRN 341

Query: 307 APGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPAGSD- 366
           AP A AV SG+V Y+HFVFR DFKDWKLM  SVG GEE+MP R   +   +S+  + ++ 
Sbjct: 342 APAANAVVSGEVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEE 401

Query: 367 -HEIAAMMTPIKKLSRNR 381
               AA  TPI+KLSRNR
Sbjct: 402 CEAAAAPTTPIRKLSRNR 416

[Close]

BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QF30_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186220 PE=4 SV=1)

HSP 1 Score: 728.0 bits (1878), Expect = 7.300e-207
Identity = 377/380 (99.21%), Postives = 377/380 (99.21%), Query Frame = 1


		  
Query: 1   MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 60
           MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE
Sbjct: 70  MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 129

Query: 61  EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 120
           EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV
Sbjct: 130 EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 189

Query: 121 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 180
           ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI
Sbjct: 190 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 249

Query: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 240
           GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK
Sbjct: 250 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 309

Query: 241 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKK 300
           NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC  
Sbjct: 310 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC-- 369

Query: 301 SPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA 360
            PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA
Sbjct: 370 -PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA 429

Query: 361 GSDHEIAAMMTPIKKLSRNR 381
           GSDHEIAAMMTPIKKLSRNR
Sbjct: 430 GSDHEIAAMMTPIKKLSRNR 446

[Close]

BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QH17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186220 PE=4 SV=1)

HSP 1 Score: 631.7 bits (1628), Expect = 7.100e-178
Identity = 329/335 (98.21%), Postives = 331/335 (98.81%), Query Frame = 1


		  
Query: 1   MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 60
           MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE
Sbjct: 70  MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 129

Query: 61  EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 120
           EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV
Sbjct: 130 EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 189

Query: 121 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 180
           ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI
Sbjct: 190 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 249

Query: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 240
           GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK
Sbjct: 250 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 309

Query: 241 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKK 300
           NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC  
Sbjct: 310 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVC-- 369

Query: 301 SPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLD 336
            PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKL+ +
Sbjct: 370 -PRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLVFE 401

[Close]

BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1V5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004240 PE=4 SV=1)

HSP 1 Score: 617.5 bits (1591), Expect = 1.400e-173
Identity = 327/383 (85.38%), Postives = 346/383 (90.34%), Query Frame = 1


		  
Query: 1   MGKVKIEKGSTSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSGGEEE 60
           MGKVK EKG+TSAVVR+ R R+T A+S+SGDSAAEHQN+P  RKSRPPPSQ +GSGGEEE
Sbjct: 1   MGKVKREKGTTSAVVRELRGRKTGAVSTSGDSAAEHQNQPLQRKSRPPPSQKNGSGGEEE 60

Query: 61  EDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQV 120
           E EEDEVVVRRNLRSKYLAVKNLLS GA      DSDKFKAM DEVESLHKKV KPREQV
Sbjct: 61  E-EEDEVVVRRNLRSKYLAVKNLLSGGA-----ADSDKFKAMIDEVESLHKKVRKPREQV 120

Query: 121 ADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDI 180
           ADAEALFDITSSFVKSVKAQKNEG+TPSDFVSCLLKDYGRQGRATSS DDSGNSIIWKDI
Sbjct: 121 ADAEALFDITSSFVKSVKAQKNEGVTPSDFVSCLLKDYGRQGRATSSIDDSGNSIIWKDI 180

Query: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKTDTDK 240
           GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHV+PTDT+RPEELDNTTE KTDTDK
Sbjct: 181 GLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVKPTDTSRPEELDNTTEEKTDTDK 240

Query: 241 NMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCKK 300
           NMS+MF ILRK+RRVRLEN+ILDRSSFAQTVENLFALSFLVKDGRAEITAN NGHFVC  
Sbjct: 241 NMSIMFGILRKDRRVRLENLILDRSSFAQTVENLFALSFLVKDGRAEITANKNGHFVC-- 300

Query: 301 SPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPA 360
            PRNAP AE+VTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEE+MPHRV A+T  HS+LP 
Sbjct: 301 -PRNAPSAESVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEELMPHRVPAETSAHSELPT 360

Query: 361 GSD---HEIAAMMTPIKKLSRNR 381
             +   HE AA  TPI+KLSRNR
Sbjct: 361 EPENIVHEKAATTTPIRKLSRNR 374

[Close]

BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FHE7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g060320 PE=4 SV=1)

HSP 1 Score: 495.0 bits (1273), Expect = 1.000e-136
Identity = 265/387 (68.48%), Postives = 302/387 (78.04%), Query Frame = 1


		  
Query: 1   MGKVKIEKGS----TSAVVRQFRSRETAAISSSGDSAAEHQNKPPLRKSRPPPSQHHGSG 60
           M +VK E GS    T+  VR+ RS +  A S+S +   +H                    
Sbjct: 1   MARVKKEAGSRSNNTNTRVRELRSSKIEANSTSNEQQQQHV------------------- 60

Query: 61  GEEEEDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKP 120
             +E ++EDEVVVRRNLRS+YLAVKNLLS    D  + DS +FK++ DEVESLH KV KP
Sbjct: 61  --DEVEQEDEVVVRRNLRSRYLAVKNLLSGDTHDLSQPDSQRFKSIIDEVESLHAKVEKP 120

Query: 121 REQVADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSII 180
           REQVADAEAL DITSSF+KSVKAQKNEG+TPSDFVSCL +D+GRQGRATSS D+S + ++
Sbjct: 121 REQVADAEALMDITSSFLKSVKAQKNEGVTPSDFVSCLFRDFGRQGRATSSVDNSSDLVL 180

Query: 181 WKDIGLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNTTEVKT 240
           WKDIGLAVSHIFRKGTGC TMLGPMSSELKRRK++VRKKHV+PTDT+RPEEL+N  E KT
Sbjct: 181 WKDIGLAVSHIFRKGTGCCTMLGPMSSELKRRKSIVRKKHVKPTDTSRPEELNNLKEEKT 240

Query: 241 DTDKNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHF 300
           DTDKNMS+MF ILRKNRRVRLEN++L+R SFAQTVENLFA SFLVKDGRAEITAN NGHF
Sbjct: 241 DTDKNMSIMFGILRKNRRVRLENLVLNRKSFAQTVENLFAFSFLVKDGRAEITANENGHF 300

Query: 301 VCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHS 360
           VC   PRNAP AEAV SG+VSYSHFVFR D+KDWKLMLDSV EGEE+MPHRV ADTF  S
Sbjct: 301 VC---PRNAPAAEAVASGRVSYSHFVFRFDYKDWKLMLDSVVEGEELMPHRVPADTFADS 360

Query: 361 KLPAGS---DHEIAAMMTPIKKLSRNR 381
           + PA S   D E  A  TPI+KLSRNR
Sbjct: 361 EFPAESANADPERVATTTPIRKLSRNR 363

[Close]

BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
Match: F6HLJ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_08s0007g06380 PE=4 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 7.700e-108
Identity = 208/318 (65.41%), Postives = 254/318 (79.87%), Query Frame = 1


		  
Query: 67  VVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQVADAEAL 126
           V  RR LRS+YLAVKN +  G ED  + DSDKFK++ +EVESLH++V KPREQVADAEAL
Sbjct: 30  VTERRVLRSRYLAVKNQICDGREDITKVDSDKFKSIINEVESLHQQVQKPREQVADAEAL 89

Query: 127 FDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDIGLAVSH 186
            DIT++ V SVKA  NEG+TPSDFVSCLL+++G+    ++SA+D+GNSI+WKDIGL VSH
Sbjct: 90  LDITNTLVTSVKAHGNEGITPSDFVSCLLQEFGQNPGVSTSAEDAGNSIVWKDIGLVVSH 149

Query: 187 IFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTDTARPEELDNT-TEVKTDTDKNMSLM 246
           IF++ +GC TMLGPM++E+K+RK VV  K VRPT++ARPEELD+T  E K+DTDKNMS+M
Sbjct: 150 IFKRASGCCTMLGPMNTEMKQRKPVVHNKRVRPTESARPEELDDTVVEEKSDTDKNMSIM 209

Query: 247 FDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNG-HFVCKKSPRN 306
           FDILRKNRRVRLEN+IL+R+SFAQTVENLFALSFLVKDGRAEIT +  G H V   SPRN
Sbjct: 210 FDILRKNRRVRLENLILNRNSFAQTVENLFALSFLVKDGRAEITVDGRGCHLV---SPRN 269

Query: 307 APGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHSKLPAGSD- 366
           AP A AV SG+V Y+HFVFR DFKDWKLM  SVG GEE+MP R   +   +S+  + ++ 
Sbjct: 270 APAANAVVSGEVCYNHFVFRFDFKDWKLMATSVGAGEELMPQRNSVNLPNNSQTDSVAEE 329

Query: 367 -HEIAAMMTPIKKLSRNR 381
               AA  TPI+KLSRNR
Sbjct: 330 CEAAAAPTTPIRKLSRNR 344

[Close]

BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
Match: NSE4A_ARATH (Non-structural maintenance of chromosomes element 4 homolog A OS=Arabidopsis thaliana GN=NSE4A PE=2 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 7.200e-83
Identity = 170/344 (49.42%), Postives = 232/344 (67.44%), Query Frame = 1


		  
Query: 42  LRKSRPPPSQHHGSGGEEEEDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKA 101
           +R   PPP Q      EEE+   D    RR LRSKYL+++N ++   +D ++ DSDKF  
Sbjct: 41  VRPDEPPPPQ------EEEQGISD----RRILRSKYLSLQNEINDCKDDLMKIDSDKFSR 100

Query: 102 MFDEVESLHKKVSKPREQVADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQ 161
           + + VE+LH++V KPREQ+ADAEAL DI ++ + SVK+Q   G++P++FV+ L+  +G+ 
Sbjct: 101 IINAVENLHQQVRKPREQIADAEALLDIANTLMSSVKSQSAHGVSPAEFVNALISGFGQG 160

Query: 162 GRATSSADDSGNSIIWKDIGLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTD 221
                + + +  S+ WKD+G AV        GCSTMLGPM +ELK+RK    +K  +P +
Sbjct: 161 SLGIDTDETAQVSLKWKDLGFAVCSTVLVSCGCSTMLGPMDTELKQRKRAPNRKRTKPGE 220

Query: 222 TARPEELDNT-TEVKTDTDKNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFL 281
             RP+E+D++ +E KTDTDKNM++MF+IL K +RV+LEN++L+R SFAQTVENLFALSFL
Sbjct: 221 GVRPDEVDDSQSEEKTDTDKNMTIMFNILGKKKRVQLENLVLNRRSFAQTVENLFALSFL 280

Query: 282 VKDGRAEITANTNG-HFVCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGE 341
            KDGR EI  + +G HF     PRNAP A  V SG+V Y+HFVFRLDFKDWKLM + V  
Sbjct: 281 AKDGRVEIIVDKSGSHFAM---PRNAPDANVVMSGEVIYNHFVFRLDFKDWKLMSEMVPL 340

Query: 342 GEEMMPHR---VEADTFGHSKLPAGSDHEIAAMMTPIKKLSRNR 381
           GEE+MPHR   V + +   +  PA +D       TPI+KLSRNR
Sbjct: 341 GEELMPHRQTAVASSSCPAASAPASADFTQDTQTTPIRKLSRNR 371

[Close]

BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
Match: NSE4B_ARATH (Non-structural maintenance of chromosomes element 4 homolog B OS=Arabidopsis thaliana GN=NSE4B PE=2 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.000e-73
Identity = 159/338 (47.04%), Postives = 224/338 (66.27%), Query Frame = 1


		  
Query: 19  RSRETAAISSSGDSAA---EHQNKPPLRKSRP--PPSQHHGSGGEEEEDEEDEVVVRRNL 78
           RSR   A  SS        E ++K  +   RP  PP Q         E+EE  +  RR +
Sbjct: 15  RSRRREADESSETPKIVKKEKRSKTVIASLRPQQPPIQ---------EEEEQGIADRRAI 74

Query: 79  RSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQVADAEALFDITSSF 138
           RS+YLA+ + +    +D  + DS+KF ++ +EVE+LH+KV KPREQ+ADAEAL D+T+S 
Sbjct: 75  RSQYLALTHKIKDAKDDLTKIDSNKFNSIINEVENLHQKVRKPREQIADAEALLDLTNSV 134

Query: 139 VKSVKAQK-NEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWKDIGLAVSHIFRKGT 198
           V SVK+Q  + G++P++FV+ L+  +G+      + +++  S+ WKD+G  V        
Sbjct: 135 VSSVKSQSAHGGVSPAEFVNALINGFGKTSLRIDADENTQVSMKWKDLGFTVCSTVLVSC 194

Query: 199 GCSTMLGPMSSELKRRKTVV-RKKHVRPTDTARPEELDNT-TEVKTDTDKNMSLMFDILR 258
           GC+TM+GPM SE+K+RK+ V  +K  +P    +PEE+D+T  E K+DTD NM++MF+ILR
Sbjct: 195 GCTTMMGPMYSEMKQRKSRVGNRKRTKPGAGVKPEEVDDTEAEKKSDTDNNMAVMFNILR 254

Query: 259 KNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNG-HFVCKKSPRNAPGAE 318
           KN+RV++EN++L+R SFAQT EN+FALSFLVKDGR EIT + NG HFV    PRNAP A 
Sbjct: 255 KNKRVKIENLVLNRKSFAQTAENMFALSFLVKDGRVEITVDNNGSHFV---EPRNAPAAN 314

Query: 319 AVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHR 348
            V SG+V+Y+HFV R D+KDW+ M   V  GEE+MP R
Sbjct: 315 LVLSGEVAYNHFVLRFDYKDWEPMSKMVAVGEELMPLR 340

[Close]

BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
Match: NSE4_SCHPO (Non-structural maintenance of chromosome element 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nse4 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.800e-10
Identity = 68/297 (22.90%), Postives = 131/297 (44.11%), Query Frame = 1


		  
Query: 70  RRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVES---LHKKVSKPREQVADAEAL 129
           +R+LR +Y   +NL++   E  L    ++   +++ + +   L   V  P E   DA  L
Sbjct: 6   KRDLRKRY---RNLINKVQESRLELVDEENNNLYETITTANDLFSSVDAPTEATLDALLL 65

Query: 130 FDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQGRATSSADDSGN----SIIWKDIGL 189
                  + S+KA++     P   +    K+  +     +S  +          W  +G 
Sbjct: 66  TKTVD--LASIKARQLHIGRPKFNIELFTKNIKQFLNYPTSHSNVTRIQEIDTAWSRLGK 125

Query: 190 AVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVR-PTDTARPEELD--NTTEVKTDTD 249
             S+  ++    + M+GP+S   K R    R++  + P    +P  L+  N T  + +T 
Sbjct: 126 LASNCEKQPASLNLMVGPLSFRKKERNIQRRERLQKAPNVLTQPTMLNERNITTQENNTT 185

Query: 250 KNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNGHFVCK 309
           KN+  +  +L+ ++ V     I +  S+ QTVENLF +SFL K+G+A +  N +G  +  
Sbjct: 186 KNVLHISRLLQAHQPVNFLKFITNPQSYPQTVENLFYVSFLFKEGKAALVENESG--ILM 245

Query: 310 KSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHRVEADTFGHS 357
              R  P  + V +G++     V  +    ++ ++      E ++P R   +T  +S
Sbjct: 246 LETRIPPTDDQVVAGEIRNIQLVLDMTMDLYENIIKEYNIKESIIPTRAPVETSTNS 295

[Close]

BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
Match: NSE4A_HUMAN (Non-structural maintenance of chromosomes element 4 homolog A OS=Homo sapiens GN=NSMCE4A PE=1 SV=2)

HSP 1 Score: 58.2 bits (139), Expect = 2.900e-7
Identity = 82/338 (24.26%), Postives = 137/338 (40.53%), Query Frame = 1


		  
Query: 19  RSRETAAISSSGDSAAEHQN---KPPLRKSRPPPSQHHGSGGEEEEDEEDEVVVRRNLRS 78
           RSR   +  S   SA E +    +P L  + P  S          E E D+ + R+ +R 
Sbjct: 29  RSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDEMMDPASLEAEADQGLCRQ-IRH 88

Query: 79  KYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQVADAEALFDITSSFVK 138
           +Y A+ N +    ED L    DK   + +E  +L  +VS+ RE V DA  L  + S   K
Sbjct: 89  QYRALINSVQQNREDILNA-GDKLTEVLEEANTLFNEVSRAREAVLDAHFLV-LASDLGK 148

Query: 139 SVKAQKNEGLTPSD---FVSCLLKDYG---RQGRATSSADDSGNSII-----WKDIGLAV 198
               Q    L+  D   +V  LL   G    +       +DS +        WK  G   
Sbjct: 149 EKAKQLRSDLSSFDMLRYVETLLTHMGVNPLEAEELIRDEDSPDFEFIVYDSWKITGRTA 208

Query: 199 SHIFRKGTGCSTMLGPMSSELK---------RRKTVVRKKHVRPTDTARPEELDNTTEVK 258
            + F K      +LG +  E           R+  V++++   P    R EE       K
Sbjct: 209 ENTFNKTHTFHFLLGSIYGECPVPKPRVDRPRKVPVIQEERAMPAQLRRMEESHQEATEK 268

Query: 259 TDTDKNMSLMFDILRKNRRVRLE--NIILDRSSFAQTVENLFALSFLVKDGRAEITANTN 318
            + ++ + L+    R++    +   + ++D  SF +TVEN+F +SF+++DG A I  + +
Sbjct: 269 -EVERILGLLQTYFREDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQD 328

Query: 319 GHFVCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWK 332
              V +    N    E         +  +  L ++DW+
Sbjct: 329 RLPVIEPVSINEEN-EGFEHNTQVRNQGIIALSYRDWE 361

[Close]

BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
Match: NSE4A_BOVIN (Non-structural maintenance of chromosomes element 4 homolog A OS=Bos taurus GN=NSMCE4A PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.900e-6
Identity = 79/294 (26.87%), Postives = 119/294 (40.48%), Query Frame = 1


		  
Query: 19  RSRETAAISSSGDSAAEHQN---KPPLRKSRPPPSQHHGSGGEEEEDEEDEVVVRRNLRS 78
           RSR   +  S   +A E +    +P L  + P  S          E+E D  + R+ +R 
Sbjct: 29  RSRSPLSPGSRRGAAPERREAPERPGLEDTEPSDSGDEMIDPASLEEETDPSLCRQ-IRH 88

Query: 79  KYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQVADAEALFDITSSFVK 138
           +Y A+ N +    ED L   SDK   + +E  +L   VS+ RE V DA  L  + S   K
Sbjct: 89  QYRALINSVQQNREDILNA-SDKLTEVLEEANTLFNGVSRAREAVLDAHFLV-LASDLGK 148

Query: 139 SVKAQKNEGLTPSD---FVSCLLKDYG----RQGRATSSADDSGNSII----WKDIGLAV 198
               Q    L   D   +V  LL   G             D S    I    WK  G   
Sbjct: 149 EKAKQLRSDLNSFDMLRYVETLLTHMGVNPLEAEELIRDEDSSDLEFIVYDSWKISGKTA 208

Query: 199 SHIFRKGTGCSTMLGPMSSEL---KRRKTVVRKKHVRPTDTARPEELDNTTEVKTD-TDK 258
            + F K      +LG +  E    K R    RK  +     A P +L    E   + T+K
Sbjct: 209 ENTFNKTHTFHFLLGSIQGECPVPKPRIERPRKVRMIEEQQAMPAQLKRMEESHQEATEK 268

Query: 259 NMSLMFDILRK------NRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEI 289
            +  +  +L+       +  +   + ++D  SF +TVEN+F +SF+++DG A I
Sbjct: 269 EVERILGLLQTYFQEDPDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARI 319

[Close]

BLAST of Spo24007.1 vs. TAIR (Arabidopsis)
Match: AT1G51130.1 (Nse4, component of Smc5/6 DNA repair complex)

HSP 1 Score: 309.3 bits (791), Expect = 4.100e-84
Identity = 170/344 (49.42%), Postives = 232/344 (67.44%), Query Frame = 1


		  
Query: 42  LRKSRPPPSQHHGSGGEEEEDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKA 101
           +R   PPP Q      EEE+   D    RR LRSKYL+++N ++   +D ++ DSDKF  
Sbjct: 41  VRPDEPPPPQ------EEEQGISD----RRILRSKYLSLQNEINDCKDDLMKIDSDKFSR 100

Query: 102 MFDEVESLHKKVSKPREQVADAEALFDITSSFVKSVKAQKNEGLTPSDFVSCLLKDYGRQ 161
           + + VE+LH++V KPREQ+ADAEAL DI ++ + SVK+Q   G++P++FV+ L+  +G+ 
Sbjct: 101 IINAVENLHQQVRKPREQIADAEALLDIANTLMSSVKSQSAHGVSPAEFVNALISGFGQG 160

Query: 162 GRATSSADDSGNSIIWKDIGLAVSHIFRKGTGCSTMLGPMSSELKRRKTVVRKKHVRPTD 221
                + + +  S+ WKD+G AV        GCSTMLGPM +ELK+RK    +K  +P +
Sbjct: 161 SLGIDTDETAQVSLKWKDLGFAVCSTVLVSCGCSTMLGPMDTELKQRKRAPNRKRTKPGE 220

Query: 222 TARPEELDNT-TEVKTDTDKNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFL 281
             RP+E+D++ +E KTDTDKNM++MF+IL K +RV+LEN++L+R SFAQTVENLFALSFL
Sbjct: 221 GVRPDEVDDSQSEEKTDTDKNMTIMFNILGKKKRVQLENLVLNRRSFAQTVENLFALSFL 280

Query: 282 VKDGRAEITANTNG-HFVCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGE 341
            KDGR EI  + +G HF     PRNAP A  V SG+V Y+HFVFRLDFKDWKLM + V  
Sbjct: 281 AKDGRVEIIVDKSGSHFAM---PRNAPDANVVMSGEVIYNHFVFRLDFKDWKLMSEMVPL 340

Query: 342 GEEMMPHR---VEADTFGHSKLPAGSDHEIAAMMTPIKKLSRNR 381
           GEE+MPHR   V + +   +  PA +D       TPI+KLSRNR
Sbjct: 341 GEELMPHRQTAVASSSCPAASAPASADFTQDTQTTPIRKLSRNR 371

[Close]

BLAST of Spo24007.1 vs. TAIR (Arabidopsis)
Match: AT3G20760.1 (Nse4, component of Smc5/6 DNA repair complex)

HSP 1 Score: 281.2 bits (718), Expect = 1.200e-75
Identity = 146/292 (50.00%), Postives = 209/292 (71.58%), Query Frame = 1


		  
Query: 60  EEDEEDEVVVRRNLRSKYLAVKNLLSSGAEDSLRTDSDKFKAMFDEVESLHKKVSKPREQ 119
           +E+EE  +  RR +RS+YLA+ + +    +D  + DS+KF ++ +EVE+LH+KV KPREQ
Sbjct: 52  QEEEEQGIADRRAIRSQYLALTHKIKDAKDDLTKIDSNKFNSIINEVENLHQKVRKPREQ 111

Query: 120 VADAEALFDITSSFVKSVKAQK-NEGLTPSDFVSCLLKDYGRQGRATSSADDSGNSIIWK 179
           +ADAEAL D+T+S V SVK+Q  + G++P++FV+ L+  +G+      + +++  S+ WK
Sbjct: 112 IADAEALLDLTNSVVSSVKSQSAHGGVSPAEFVNALINGFGKTSLRIDADENTQVSMKWK 171

Query: 180 DIGLAVSHIFRKGTGCSTMLGPMSSELKRRKT-VVRKKHVRPTDTARPEELDNT-TEVKT 239
           D+G  V        GC+TM+GPM SE+K+RK+ V  +K  +P    +PEE+D+T  E K+
Sbjct: 172 DLGFTVCSTVLVSCGCTTMMGPMYSEMKQRKSRVGNRKRTKPGAGVKPEEVDDTEAEKKS 231

Query: 240 DTDKNMSLMFDILRKNRRVRLENIILDRSSFAQTVENLFALSFLVKDGRAEITANTNG-H 299
           DTD NM++MF+ILRKN+RV++EN++L+R SFAQT EN+FALSFLVKDGR EIT + NG H
Sbjct: 232 DTDNNMAVMFNILRKNKRVKIENLVLNRKSFAQTAENMFALSFLVKDGRVEITVDNNGSH 291

Query: 300 FVCKKSPRNAPGAEAVTSGKVSYSHFVFRLDFKDWKLMLDSVGEGEEMMPHR 348
           FV    PRNAP A  V SG+V+Y+HFV R D+KDW+ M   V  GEE+MP R
Sbjct: 292 FV---EPRNAPAANLVLSGEVAYNHFVLRFDYKDWEPMSKMVAVGEELMPLR 340

The following BLAST results are available for this feature:

BLAST of Spo24007.1 vs. NCBI nr
BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
BLAST of Spo24007.1 vs. TAIR (Arabidopsis)

BLAST of Spo24007.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902155024\|gb\|KNA05865.1\|	1.0e-206	99.2	hypothetical protein SOVF_1862...	[more]
gi\|902155025\|gb\|KNA05866.1\|	1.0e-177	98.2	hypothetical protein SOVF_1862...	[more]
gi\|902239744\|gb\|KNA25693.1\|	2.0e-173	85.3	hypothetical protein SOVF_0042...	[more]
gi\|731323872\|ref\|XP_010672667.1\|	1.5e-136	68.4	PREDICTED: non-structural main...	[more]
gi\|297739846\|emb\|CBI30028.3\|	1.1e-107	65.4	unnamed protein product [Vitis...	[more]

BLAST of Spo24007.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QF30_SPIOL	7.3e-207	99.2	Uncharacterized protein OS=Spi...	[more]
A0A0K9QH17_SPIOL	7.1e-178	98.2	Uncharacterized protein OS=Spi...	[more]
A0A0K9S1V5_SPIOL	1.4e-173	85.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8FHE7_BETVU	1.0e-136	68.4	Uncharacterized protein OS=Bet...	[more]
F6HLJ8_VITVI	7.7e-108	65.4	Putative uncharacterized prote...	[more]

BLAST of Spo24007.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
NSE4A_ARATH	7.2e-83	49.4	Non-structural maintenance of ...	[more]
NSE4B_ARATH	3.0e-73	47.0	Non-structural maintenance of ...	[more]
NSE4_SCHPO	4.8e-10	22.9	Non-structural maintenance of ...	[more]
NSE4A_HUMAN	2.9e-7	24.2	Non-structural maintenance of ...	[more]
NSE4A_BOVIN	1.9e-6	26.8	Non-structural maintenance of ...	[more]

BLAST of Spo24007.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G51130.1	4.1e-84	49.4	Nse4, component of Smc5/6 DNA ...	[more]
AT3G20760.1	1.2e-75	50.0	Nse4, component of Smc5/6 DNA ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014854	Non-structural maintenance of chromosome element 4, C-terminal	PFAM	PF08743	Nse4_C	coord: 255..346 score: 2.0
IPR027786	Nse4/EID family	PANTHER	PTHR16140	UNCHARACTERIZED	coord: 58..380 score: 1.3E
None	No IPR available	PANTHER	PTHR16140:SF5	SUBFAMILY NOT NAMED	coord: 58..380 score: 1.3E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030915	Smc5-Smc6 complex