Spo24018.1 (mRNA)

Overview
NameSpo24018.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionMitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
LocationSuper_scaffold_122 : 132950 .. 139088 (+)
Sequence length683
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGCTCTATGTGCACCATGGTCCACCATCTAAATTGCCCTATTTTAACCCCTCAATAATCAATATACAGCCATACAGGCAAACAGCAGCTCGGAAAAACCCCCCTGTGAAAACTTTGACAAACTCCGAGTAAAACTTTCAGTAGCAAAGAGTTCTTCTCCGTATTCGCTAAATTGCCTGGGAGTAAGAAGAGGAGGATATGAGATATGGAAACCAAGATTGAGGAAGACACTCCTTGCTCTTCTTTTGTCGTTGAATCAATTGTTCGTGTTGGAACCGTATGTCATTCAATCCTTTTTTTTTTCTTCATTTAATTTCTCAACTTTACTTTCTAATTTCTTTTTTTTTGATAATTTTACAGGCAGGGGCACTCTGGGGTTTGTGTTCTGGACCATCTGAGGCTACCAAATTAGGTAATTTATCCAATAAATAGTAAAATTGATCATGGGTTATTATACTTTCTGATTGAAGAAATGCTTTTTGTTAATTTGTTGAAATAATTTGTTTGTTAACAGTAGGATGGTTTGTTTCTTTGATTTGGGTTTTTATTGTTACATTTGAAATTTGATAATGCAGGTCTTGCTGGGTTTGCTCGGGCCTCGTTTTTGGTAAGAATCTGATGCAGCTCGAAATTCAGAGAGAATGATGTTCAGGGTATAATTTTGTTTTTGTCTGTTTTAATATGCATTTATCTGATGTTATTATGATTTGAAATGCAGGCGAAATCAATTGGTGTAAATAGCGTTCAATGTGGTAATATTTTTATGAAAGTTAAGTGTGTTTGCCTATTTTCAATTTGCTATTTAGTCAATTAAAGCATCTTAAGAAAGTTTCAGATACTAAATGTGTAGAAATATTGTATTTGCTTGTGTATCGGCGTCTATAATTTGGTTAGAGACAGAGGTAGTAACGGGCAGGAACTGTAATAGTTGGTTGATGTAGTGAGATGGGATTCTGTCAACTGCTAGGGAGTAAGGGAGATGTTGTTGCTTATCAAGAATGTTGCAAAAAAGGATACATGTATTGCACTAATTCATGGGTAGAGTTTTAGCGCTTCTGATCAGCTATTGGGACAATAAGAAATCTTTTAGAACTAAATCCGAATGTCCAATAGGTTGTAATGGCTCTTGTCTTGGTAGTTGAATACAACCACTAACTGTAGTCCATTGGACACTTGAGAAAATACTGCAATATGCAATTAGTAATTCAATCCCATTTTGGATGTCCATTATGTGATTTCTGGTTTCACATCATAGGAATGTATGATGAAGTTTATTCCTTCTCATTCTATGTTATTTATCAGAAGGTTGTTTGGTACCTTTGGTTGCAAACCTACAGTTATAGTACTTGGTACTTATATCGGGCATGGTTAATTGAGTATGTGTCGTGGTGTCAGACTCGACTAATGTATGGAAGTTTTCCATATTTTTTGATCTATATAGAGGTGTCAACTACCCTACCATAGTTACCTAATTCGCTAGTATGAGATTGGGTATGGGTTTGTAACTCGCCACTTAATTTGCTGAAATAGGCCAAAAATATACTGCTTCAATGTTATAGATTGCCTTTTTCATTTTGTGGGCTTAAGGAATACTCCCTCCGTCCCTAAAAGATTGCCCCATACCACAAATAAATATTTTACAAGTTCAAAAAGAGTTTTAATTAGTGTCTTTGAGATCTAAGCCCGTGATTAAATCTTTGAAGTTGTTTGAAGAGTTAAAGTTTGTTTAGCGGGTGTTAATTTGTAACTTGCAAGCAGCTCGTTAAGGGTGGGCTGTTACGATTTTAGTTATCAAAGTCGTAACCGAAGCTTTCTCAACTTATTATTAAGTTGGTTGTAATTTATTGTACGTAGGTAATCTTTTTGGGTCATTGTTGTTGATTAAGCTTGTGATTGACTCTTTGAAGTTGTTGGAGGAGTTCAGATTATATAGCGGGGTTAATTGTAGTTTATTATTTATGGATTACATATCCGTGTTAGAGTTGTAGTTAAGTCAAGTTGTTTGGTTCAAGTTTAAGTGAGATTAGAAGTAGCTCATTAAGTGTGCGCTGTCACAGTGACACCCTGGTGTTGTTTTGGGAAATGTTATGTTGGAATGTTGTAATTGAAGCAGGTGAAAGAAAATCTGACGTAATATCCTAAGCAATGTTTTAGGTTGTCCATATTTAAGGGAAGTGCTGCCGAATTTTTTTTTAATAATNTAATATCCTAAGCAATGTTTTAGGTTGTCCATATTTAAGGGAAGTGCTGCCGAATTTTTTTTTAATAATTAATTAAGTTTAAGAGTTTTAATTAGTGTCTTTGAGATCTAAGCCCGTGATTAAATCTTTGAAGTTGTTTGAAGAGTTAAAGTTTGTTTGAAGAGTTAAAGTTTGTTTAGCAGGTGTTAATTTGTAACTTGCAAGCAGCTCGTTAAGGGTGGGCTGTTACATGTCTATTTTCACTTTATTAAGATAGAATGCAAAACGAAAGCATGTGGGTTGGTAGTTTTGTCTTTTTGCTAATATAAATAATAGAATGTGAGAGGAAACATGTGAGGACCACATACTATAAATGGTATGGGGCAAACTCAAAGAGACGAACCGAAAAGGAAATTGGGGAAATTTTTTAGGGACTGAGGGAGTGGGTAGTAGTGGTCCCAAACTTCTAATCCTTGTAGGAGACTTGGAGTATTATTTGACATAACTACTTGAGGTGAACTGAAAATTCCAACTAACTTGGATGCAAACATGAGAGTGTACCTTGAACTTCATTCTTGTCTGCATGAGATATGGTGATAAAGACTAAAGAGCATCTTATTGCATGATACGAAGTAATACTTTTGGACTTGTATCAGGCACCATTTCACCCTAGCTCAGACACTTTTTCTTACTGTGTCTTTTGTGTGTGTTAATATTGGGAATTTGTTCTGCCTAAAGTTGTTTCTCTGGCCCATGTTATAAAAACCTTCCTTTTAATTTTATTTCCTTGTTCTTCGTTTTCATTTCATTATATCTTTCTTCATCACATACTTAATAAGAGGTTCACTTTCTTTTATGCTTTTGGAAATACTCCTCAAAATTAAAATGATCCAACACAAGGCTGCCAATTAGCCTTTAGGCCCTTTACCAGAATGTTTGGCCATCAAAATGCTGCAATCTGAATTTATAACTACATGTCCATTTTTTTTGGTGGTGGTGGTGGGGGTGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATCCTCGAGTAATGGATGGTTTACTCTGAATTTCTAGATCTTCTTAAAGGAATGGCGTTGGATCCAAAGGCTTCAGTTGATGTATGAGGGCGTTTGGTTCGCGGATTTTTGGTATGAGATATGGGTTTGGAATTATCAAAATCCATACCTTGTGTTTGGTTTTGAAAAATTCATATTCTAAACCCATACCTCAAACCCACAAGGTATGGGGTTTAGAAATCGGGGGAGGTTGGTATGGCTCATACCAAACCTATAGGTATCAAATAAAAGAAAAATATTCATTCCCGGATATAACCAAACACACGGTATTAGGAATCAAGTTCCAACCCCATACCACAATGGTTTCATTCCTGATTCCAAACCAATACCATTACGCAAACCAAACGCCTCCTTAGGATTTAGGAAAAATATGGTTGATGCTGTGGGTTAACTTCAGTTCACCGACTTAATAAAGTGATGATTTTTATAGGCTTATAACCTTAGTGGGATAGTGTTTCATATTTTATATCCTTATCGTTGAGAGTTCAGAAATTTGTTGGACCGTTTATTGTGGATTTGTGATATCTTTGATGATGCCGTGAGGGATGATGAGAATCTATGCTCGTCAGTATCTTCACAAGTTTGTTTTGGTTAGCTTGGTTGACTGATTTCAACCTGTTTTCAACTTCTCATGAAAAGCACACGAGCTGGAACTTTCTGACTTACAACAGAGAATGGAAATATTTTGGGATGAAGTATTAGTTTAGTTGGAGCTCTATATTTATTGATCCTTGTGTTCCGCAGACCTGTGAAGGAGATGGTGTTGTGAGTTGTGACTAATATTCATTGTTTGACTTGTTCATATATGATACGAAGTATATCATAACCATTGTGCTTCAATAAAAAAGAAAATGTAGTAACCACAGAGTTGTCGAAAAACTTTCCTTTGGTGACTGTTCACTCATCAATGCCTAGCTTCTTGAAAATTATATTGGGTTCAGAACAAATGACAACTTGGTTATTCTACTGCATGTTTTATCATTGATTTGAAGACTTGGTCCTGTTCTTTGATGTATCAAGTTATTATTTGACCCTTACTCCTTCGTCTGGCACATGATCCTTCTTAGCTTGTTTTTTATTGTATTTAATCTTACGCTTTTCAATTTCCCTTTGAACTAGGAATTTTTTCTGGGATTTTTACTGTGGCTCGCTGTGGTATCCAAACTTATCGAGGGCGTGCAGACGCGGTAAGTAGTTTCCGTAGTTTTCAAAATTCACAAATTCTTCCTCTATGAGGGGTGGCTCAAATTCAACTCATTCAGTCATTCCTTCATCAAAAGGGAGTAGAAAATGTTTACTGATTTCAAGAATAATGTCTAGTAAATTGCATTATTGGTTTAACTTTTTAAACGTTCTCTTAAATAATCTGCAGCAATAAAACTCTTGAATGAAGAATACTTAATCAACCATGTTTTAGAAGGAAGAAGGAAAAACCCACGATAAGATACTGTTGATATATTTTAGTTCTCCCATAGAACCACAGCCTTAGACTTAGACAGTTGATATTTTGTAACAACAAAGCCTTAGTCCCAAAATGATTTGGGGTCGGCTAACATGAACCGTCATAAGGAACCGTTCATGAAACGTGAAGCAAGAAAAGTAAAAAGGTTATGTTAAATAGAGTAAACACGTAAATTCATAAAGTGAGGGTGAGTGTAAGGAGACACGGAATATAGGGAACAAGAAAACAAGGTCAGTTTAAAGAAGAAGCACAAAGATGTTAAAAAAAGAACGCTATAGGGATCAAAGGAAAATAGAAAAAGAAGTCATGTTGAGTCGTGGGCATATATTTTTCTCAAATAAATATACTGCAAGGGAAATAAAAAACATAAAATTTGTCAAGTGACTGTAAATTAGAGCATTCTTAGCACTTGGATAGTATAATTCCTTAGAGGTTGGAGGTTGGAGTTCCTGTTCCAGTCTTTGTGAAAAAATGTTTATTACCACTGTAAACTGTATAGTGTTTTTGTAAGAAAATGCTTATCTGTTACAATTCTTTTTCCTTGGAACAAATTTGTGATATATATCATGTATGAAAAAGATCGGATTCTACTAGAAAAAAAAAAATTCAAGGCTAGCGCCTAGCAGTTGCATGTCATTTGATCCAATACGAATTGAGTAGGTCTTGTTGTGCAGGTTAATGCTGCAGGTGCAGGTGCTATAGTTGGAGCTGCTATTGCTGTTGGGACTCGTAGCAAGAAGGAGATTGCTGGGATGGCTGCCCTTCTTTCCATTCTAGGAGCTGCAGCTGATTATTCCAGGACTTTGTGATTTTGACATTATCTTTCTGAGGAAGTTGGAGGACTAAGGTTGAATTGACAATCTACTTTTCTTTTTGTCTTTTATTTTCAGTTTGCCCATATGGTTACATGATTGCTTTCTTGTTGAAGTGATTAATTTTGATTCTAGGTTCTTGCATAGATCAGTTAATCTGTTAACACTTAACACTAGAGTATGAGTCAAGGTGATTATACAGATATGCTTGTATCGAATGAGTTAAGACAGCCATATGTGGCGGTTTGCCTGTTCCCCAAAAGAATATATTGTCTGTTACAAGTGTTTGGTGCTACTTTCAGCTACTTGGAAGCCTTTTCCATCTCTAAAACGTACTGGTGTGTCGTATTCAGAACTCACATTTTTGCTCTGTTGCTCGTTGCCTTGCTGAAAATATGGTTAATTAACTTTTGTCGGATACATCTTGTTGTTAATCTCTGTAGCGTGGGTGTCTCTGCTATACAATGTGTCCTGCTTCATATTTGCGGTATTTGCTTTTGGATGTCCCGAAACAAATATTCATGTTTATTTAGGTACATCTTAAACTCCTTACTCAATAATTTGCATCGGACTTCTTAT

mRNA sequence

CATGCTCTATGTGCACCATGGTCCACCATCTAAATTGCCCTATTTTAACCCCTCAATAATCAATATACAGCCATACAGGCAAACAGCAGCTCGGAAAAACCCCCCTGTGAAAACTTTGACAAACTCCGAGTAAAACTTTCAGTAGCAAAGAGTTCTTCTCCGTATTCGCTAAATTGCCTGGGAGTAAGAAGAGGAGGATATGAGATATGGAAACCAAGATTGAGGAAGACACTCCTTGCTCTTCTTTTGTCGTTGAATCAATTGTTCGTGTTGGAACCGCAGGGGCACTCTGGGGTTTGTGTTCTGGACCATCTGAGGCTACCAAATTAGGTCTTGCTGGGTTTGCTCGGGCCTCGTTTTTGGCGAAATCAATTGGTGTAAATAGCGTTCAATGTGGAATTTTTTCTGGGATTTTTACTGTGGCTCGCTGTGGTATCCAAACTTATCGAGGGCGTGCAGACGCGGTTAATGCTGCAGGTGCAGGTGCTATAGTTGGAGCTGCTATTGCTGTTGGGACTCGTAGCAAGAAGGAGATTGCTGGGATGGCTGCCCTTCTTTCCATTCTAGGAGCTGCAGCTGATTATTCCAGGACTTTGTGATTTTGACATTATCTTTCTGAGGAAGTTGGAGGACTAAGGTACATCTTAAACTCCTTACTCAATAATTTGCATCGGACTTCTTAT

Coding sequence (CDS)

ATGGAAACCAAGATTGAGGAAGACACTCCTTGCTCTTCTTTTGTCGTTGAATCAATTGTTCGTGTTGGAACCGCAGGGGCACTCTGGGGTTTGTGTTCTGGACCATCTGAGGCTACCAAATTAGGTCTTGCTGGGTTTGCTCGGGCCTCGTTTTTGGCGAAATCAATTGGTGTAAATAGCGTTCAATGTGGAATTTTTTCTGGGATTTTTACTGTGGCTCGCTGTGGTATCCAAACTTATCGAGGGCGTGCAGACGCGGTTAATGCTGCAGGTGCAGGTGCTATAGTTGGAGCTGCTATTGCTGTTGGGACTCGTAGCAAGAAGGAGATTGCTGGGATGGCTGCCCTTCTTTCCATTCTAGGAGCTGCAGCTGATTATTCCAGGACTTTGTGA

Protein sequence

METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNSVQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSILGAAADYSRTL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo24018Spo24018gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo24018.1Spo24018.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24018.1.exon.1Spo24018.1.exon.1exon
Spo24018.1.exon.2Spo24018.1.exon.2exon
Spo24018.1.exon.3Spo24018.1.exon.3exon
Spo24018.1.exon.4Spo24018.1.exon.4exon
Spo24018.1.exon.5Spo24018.1.exon.5exon
Spo24018.1.exon.6Spo24018.1.exon.6exon
Spo24018.1.exon.7Spo24018.1.exon.7exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24018.1.utr5p.1Spo24018.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24018.1.CDS.1Spo24018.1.CDS.1CDS
Spo24018.1.CDS.2Spo24018.1.CDS.2CDS
Spo24018.1.CDS.3Spo24018.1.CDS.3CDS
Spo24018.1.CDS.4Spo24018.1.CDS.4CDS
Spo24018.1.CDS.5Spo24018.1.CDS.5CDS
Spo24018.1.CDS.6Spo24018.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo24018.1.utr3p.1Spo24018.1.utr3p.1three_prime_UTR
Spo24018.1.utr3p.2Spo24018.1.utr3p.2three_prime_UTR


Homology
[Close]
BLAST of Spo24018.1 vs. NCBI nr
Match: gi|902209992|gb|KNA16315.1| (hypothetical protein SOVF_090220 [Spinacia oleracea])

HSP 1 Score: 243.8 bits (621), Expect = 1.600e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS
Sbjct: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
           VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL
Sbjct: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120

Query: 121 GAAADYSRTL 131
           GAAADYSRTL
Sbjct: 121 GAAADYSRTL 130
[Close]
BLAST of Spo24018.1 vs. NCBI nr
Match: gi|731346588|ref|XP_010684531.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 189.1 bits (479), Expect = 4.800e-45
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           M+ +IEE+TPCSS  VESIV VGTAGALWGLC+GP +ATK GLAGF+RASF+AKSI   S
Sbjct: 1   MDAEIEENTPCSSMAVESIVHVGTAGALWGLCTGPYDATKSGLAGFSRASFVAKSICKTS 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+F+GIF + RCGIQ YRGR+D VNAA AGA+VGAAIA GTRSKK++ GMA LLSIL
Sbjct: 61  GQCGLFAGIFALTRCGIQKYRGRSDVVNAAAAGAVVGAAIAAGTRSKKQVVGMATLLSIL 120

Query: 121 GAAADYSRTL 131
           GAAAD+SRTL
Sbjct: 121 GAAADHSRTL 130
[Close]
BLAST of Spo24018.1 vs. NCBI nr
Match: gi|870854194|gb|KMT05999.1| (hypothetical protein BVRB_7g164850 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 169.1 bits (427), Expect = 5.100e-39
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 1 

		  

Query: 16  VESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNSVQCGIFSGIFTVARC 75
           VESIV VGTAGALWGLC+GP +ATK GLAGF+RASF+AKSI   S QCG+F+GIF + RC
Sbjct: 3   VESIVHVGTAGALWGLCTGPYDATKSGLAGFSRASFVAKSICKTSGQCGLFAGIFALTRC 62

Query: 76  GIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSILGAAADYSRTL 131
           GIQ YRGR+D VNAA AGA+VGAAIA GTRSKK++ GMA LLSILGAAAD+SRTL
Sbjct: 63  GIQKYRGRSDVVNAAAAGAVVGAAIAAGTRSKKQVVGMATLLSILGAAADHSRTL 117
[Close]
BLAST of Spo24018.1 vs. NCBI nr
Match: gi|720011364|ref|XP_010259538.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 150.6 bits (379), Expect = 1.900e-33
Identity = 77/128 (60.16%), Postives = 97/128 (75.78%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           ME +IE+D PCSS  V+SI+RVGTAG +WGLC GP +A K GL+G ARASF+ KS G   
Sbjct: 1   MEGEIEDDVPCSSLAVDSIIRVGTAGLIWGLCIGPYDARKRGLSGVARASFVVKSAGTFG 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
           +QCG+F+GIF+  RCG+Q +R + D VNA+ AGAI GAAIA  TRS  ++ GMAAL+S L
Sbjct: 61  LQCGLFAGIFSTTRCGVQKFRKKKDWVNASIAGAIAGAAIAARTRSWTQVFGMAALVSAL 120

Query: 121 GAAADYSR 129
             AADYS+
Sbjct: 121 STAADYSK 128
[Close]
BLAST of Spo24018.1 vs. NCBI nr
Match: gi|702435581|ref|XP_010069909.1| (PREDICTED: outer envelope pore protein 16-4, chloroplastic [Eucalyptus grandis])

HSP 1 Score: 150.2 bits (378), Expect = 2.500e-33
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           M+ ++ +  PCSS  V+SI+RVGTAGA+WGLC GP +A K GL+G  RASF+AKS+G  S
Sbjct: 1   MKDELSDAVPCSSLAVDSILRVGTAGAIWGLCIGPYDARKSGLSGMPRASFVAKSVGKFS 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+ +G+FTV RCGIQ YR R D VN   AGA+ GAA+A GTRS   + GMA L+S+ 
Sbjct: 61  FQCGLVAGVFTVTRCGIQRYRRRDDWVNGLVAGAVAGAAVAAGTRSWTHVLGMAGLVSVC 120

Query: 121 GAAADYSRT 130
            AAAD+SRT
Sbjct: 121 SAAADFSRT 129
[Close]
BLAST of Spo24018.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RA05_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_090220 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.100e-61
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS
Sbjct: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
           VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL
Sbjct: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120

Query: 121 GAAADYSRTL 131
           GAAADYSRTL
Sbjct: 121 GAAADYSRTL 130
[Close]
BLAST of Spo24018.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C137_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g164850 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.600e-39
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 1 

		  

Query: 16  VESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNSVQCGIFSGIFTVARC 75
           VESIV VGTAGALWGLC+GP +ATK GLAGF+RASF+AKSI   S QCG+F+GIF + RC
Sbjct: 3   VESIVHVGTAGALWGLCTGPYDATKSGLAGFSRASFVAKSICKTSGQCGLFAGIFALTRC 62

Query: 76  GIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSILGAAADYSRTL 131
           GIQ YRGR+D VNAA AGA+VGAAIA GTRSKK++ GMA LLSILGAAAD+SRTL
Sbjct: 63  GIQKYRGRSDVVNAAAAGAVVGAAIAAGTRSKKQVVGMATLLSILGAAADHSRTL 117
[Close]
BLAST of Spo24018.1 vs. UniProtKB/TrEMBL
Match: A0A059AXT2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01109 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.700e-33
Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           M+ ++ +  PCSS  V+SI+RVGTAGA+WGLC GP +A K GL+G  RASF+AKS+G  S
Sbjct: 1   MKDELSDAVPCSSLAVDSILRVGTAGAIWGLCIGPYDARKSGLSGMPRASFVAKSVGKFS 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+ +G+FTV RCGIQ YR R D VN   AGA+ GAA+A GTRS   + GMA L+S+ 
Sbjct: 61  FQCGLVAGVFTVTRCGIQRYRRRDDWVNGLVAGAVAGAAVAAGTRSWTHVLGMAGLVSVC 120

Query: 121 GAAADYSRT 130
            AAAD+SRT
Sbjct: 121 SAAADFSRT 129
[Close]
BLAST of Spo24018.1 vs. UniProtKB/TrEMBL
Match: B9SAS0_RICCO (Protein translocase, putative OS=Ricinus communis GN=RCOM_1178330 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.100e-31
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           ME ++  D PCSS+ V+SI+RVGTAGA+WGLC GP  A K GL G ++ASF+AKS+G  S
Sbjct: 1   MEDELYGDIPCSSYAVDSILRVGTAGAIWGLCIGPHNARKRGLTGASQASFVAKSVGKFS 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+ +G+FT   CGI+ YR + D VNA  AGA+ GAA+A GTR+  ++ GMA L+S  
Sbjct: 61  FQCGLVAGVFTFTHCGIRRYRRKNDWVNALIAGAVAGAAVAAGTRNWTQVVGMAGLVSAF 120

Query: 121 GAAADYSRT 130
             AADYS+T
Sbjct: 121 SVAADYSKT 129
[Close]
BLAST of Spo24018.1 vs. UniProtKB/TrEMBL
Match: V4U0P1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022836mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.100e-31
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           ME ++ +  PCSS  V++I+R+GTAGA+WGLC+GP  A K GL+G  RASF+AKSIG   
Sbjct: 1   MEEELIDAVPCSSLAVDAILRIGTAGAIWGLCAGPQLARKRGLSGITRASFVAKSIGKYG 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+ +G+F+  RCGIQ YR + D VNA  AGA+ GAAIA GTR   ++ G+A ++S  
Sbjct: 61  FQCGLVAGVFSSTRCGIQRYRKQNDWVNALIAGAVTGAAIAAGTRRWTQVIGVAGIVSAF 120

Query: 121 GAAADYSRT 130
            AAADYSRT
Sbjct: 121 SAAADYSRT 129
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BLAST of Spo24018.1 vs. ExPASy Swiss-Prot
Match: OP164_ARATH (Outer envelope pore protein 16-4, chloroplastic OS=Arabidopsis thaliana GN=OEP164 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.600e-30
Identity = 66/129 (51.16%), Postives = 92/129 (71.32%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           ME ++    PCSS  VES++RV TAG L+GLC+GP +A K+GL+G ++ASF+AKSIG   
Sbjct: 1   MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+ SG+FT+  CG+Q YRG+ D VNA   GA+ GAA+A+ TR+  ++ GMA L+S  
Sbjct: 61  FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120

Query: 121 GAAADYSRT 130
              A+ +RT
Sbjct: 121 SVLANCTRT 129
[Close]
BLAST of Spo24018.1 vs. TAIR (Arabidopsis)
Match: AT3G62880.1 (Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein)

HSP 1 Score: 132.9 bits (333), Expect = 1.400e-31
Identity = 66/129 (51.16%), Postives = 92/129 (71.32%), Query Frame = 1 

		  

Query: 1   METKIEEDTPCSSFVVESIVRVGTAGALWGLCSGPSEATKLGLAGFARASFLAKSIGVNS 60
           ME ++    PCSS  VES++RV TAG L+GLC+GP +A K+GL+G ++ASF+AKSIG   
Sbjct: 1   MEEELLSAVPCSSLTVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFG 60

Query: 61  VQCGIFSGIFTVARCGIQTYRGRADAVNAAGAGAIVGAAIAVGTRSKKEIAGMAALLSIL 120
            QCG+ SG+FT+  CG+Q YRG+ D VNA   GA+ GAA+A+ TR+  ++ GMA L+S  
Sbjct: 61  FQCGLVSGVFTMTHCGLQRYRGKNDWVNALVGGAVAGAAVAISTRNWTQVVGMAGLVSAF 120

Query: 121 GAAADYSRT 130
              A+ +RT
Sbjct: 121 SVLANCTRT 129
The following BLAST results are available for this feature:
BLAST of Spo24018.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902209992|gb|KNA16315.1|1.6e-61100.hypothetical protein SOVF_0902... [more]
gi|731346588|ref|XP_010684531.1|4.8e-4574.6PREDICTED: outer envelope pore... [more]
gi|870854194|gb|KMT05999.1|5.1e-3976.5hypothetical protein BVRB_7g16... [more]
gi|720011364|ref|XP_010259538.1|1.9e-3360.1PREDICTED: outer envelope pore... [more]
gi|702435581|ref|XP_010069909.1|2.5e-3358.9PREDICTED: outer envelope pore... [more]
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BLAST of Spo24018.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RA05_SPIOL1.1e-61100.Uncharacterized protein OS=Spi... [more]
A0A0J8C137_BETVU3.6e-3976.5Uncharacterized protein OS=Bet... [more]
A0A059AXT2_EUCGR1.7e-3358.9Uncharacterized protein OS=Euc... [more]
B9SAS0_RICCO2.1e-3155.8Protein translocase, putative ... [more]
V4U0P1_9ROSI6.1e-3155.8Uncharacterized protein OS=Cit... [more]
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BLAST of Spo24018.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OP164_ARATH2.6e-3051.1Outer envelope pore protein 16... [more]
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BLAST of Spo24018.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G62880.11.4e-3151.1Mitochondrial import inner mem... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003397Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24PFAMPF02466Tim17coord: 12..118
score: 2.
NoneNo IPR availablePANTHERPTHR14110MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM22coord: 1..126
score: 8.7
NoneNo IPR availablePANTHERPTHR14110:SF5OUTER ENVELOPE PORE PROTEIN 16-4, CHLOROPLASTICcoord: 1..126
score: 8.7

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071806 protein transmembrane transport
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005744 mitochondrial inner membrane presequence translocase complex
cellular_component GO:0009527 plastid outer membrane
molecular_function GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity